Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10380

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10370 and AO353_10375 are separated by 1 nucleotidesAO353_10375 and AO353_10380 are separated by 213 nucleotidesAO353_10380 and AO353_10385 are separated by 162 nucleotidesAO353_10385 and AO353_10390 are separated by 45 nucleotides AO353_10370: AO353_10370 - glucosamine--fructose-6-phosphate aminotransferase, at 2,273,120 to 2,274,952 _10370 AO353_10375: AO353_10375 - XRE family transcriptional regulator, at 2,274,954 to 2,275,730 _10375 AO353_10380: AO353_10380 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 2,275,944 to 2,277,266 _10380 AO353_10385: AO353_10385 - ATP synthase F0F1 subunit epsilon, at 2,277,429 to 2,277,854 _10385 AO353_10390: AO353_10390 - ATP synthase subunit beta, at 2,277,900 to 2,279,279 _10390 Position (kb) 2275 2276 2277 2278Strain fitness (log2 ratio) -2 -1 0 1 2at 2274.982 kb on - strandat 2274.982 kb on - strandat 2274.982 kb on - strandat 2274.982 kb on - strandat 2275.044 kb on - strandat 2275.044 kb on - strand, within AO353_10375at 2275.047 kb on - strand, within AO353_10375at 2275.047 kb on - strand, within AO353_10375at 2275.047 kb on - strand, within AO353_10375at 2275.047 kb on - strand, within AO353_10375at 2275.188 kb on - strand, within AO353_10375at 2275.195 kb on - strand, within AO353_10375at 2275.241 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.361 kb on - strand, within AO353_10375at 2275.694 kb on + strandat 2275.695 kb on - strandat 2275.695 kb on - strandat 2275.695 kb on - strandat 2275.695 kb on - strandat 2275.695 kb on - strandat 2275.695 kb on - strandat 2275.695 kb on - strandat 2275.698 kb on - strandat 2275.715 kb on + strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.716 kb on - strandat 2275.824 kb on + strandat 2275.825 kb on - strandat 2275.853 kb on - strandat 2275.871 kb on - strandat 2275.896 kb on + strandat 2275.896 kb on + strandat 2275.896 kb on + strandat 2275.897 kb on - strandat 2275.916 kb on + strandat 2275.916 kb on + strandat 2275.916 kb on + strandat 2275.916 kb on + strandat 2275.916 kb on + strandat 2275.916 kb on + strandat 2275.917 kb on - strandat 2275.917 kb on - strandat 2275.917 kb on - strandat 2275.940 kb on + strandat 2277.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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2,274,982 - -0.1
2,274,982 - +0.0
2,274,982 - +0.4
2,274,982 - +0.8
2,275,044 - +2.3
2,275,044 - AO353_10375 0.12 +0.5
2,275,047 - AO353_10375 0.12 -0.4
2,275,047 - AO353_10375 0.12 -0.3
2,275,047 - AO353_10375 0.12 +0.1
2,275,047 - AO353_10375 0.12 +0.7
2,275,188 - AO353_10375 0.30 +0.3
2,275,195 - AO353_10375 0.31 -0.4
2,275,241 - AO353_10375 0.37 +1.0
2,275,361 - AO353_10375 0.52 +0.4
2,275,361 - AO353_10375 0.52 -0.6
2,275,361 - AO353_10375 0.52 -1.9
2,275,361 - AO353_10375 0.52 -0.2
2,275,361 - AO353_10375 0.52 +0.8
2,275,361 - AO353_10375 0.52 -0.2
2,275,361 - AO353_10375 0.52 -0.0
2,275,361 - AO353_10375 0.52 -0.5
2,275,694 + +0.3
2,275,695 - +1.7
2,275,695 - -0.5
2,275,695 - +0.6
2,275,695 - -2.2
2,275,695 - +1.1
2,275,695 - -1.2
2,275,695 - +0.5
2,275,698 - +0.3
2,275,715 + -0.2
2,275,716 - -0.5
2,275,716 - -1.0
2,275,716 - +0.0
2,275,716 - +1.8
2,275,716 - -0.1
2,275,716 - -0.5
2,275,716 - -0.5
2,275,716 - -0.3
2,275,716 - +1.7
2,275,716 - +0.5
2,275,716 - -0.5
2,275,716 - +0.7
2,275,716 - +1.3
2,275,716 - -0.7
2,275,716 - +0.2
2,275,824 + +0.7
2,275,825 - +0.8
2,275,853 - +1.1
2,275,871 - +0.0
2,275,896 + -1.2
2,275,896 + -1.7
2,275,896 + -0.8
2,275,897 - -0.1
2,275,916 + -0.5
2,275,916 + +0.0
2,275,916 + -0.2
2,275,916 + -0.3
2,275,916 + +0.3
2,275,916 + -0.2
2,275,917 - -0.1
2,275,917 - -0.3
2,275,917 - -1.2
2,275,940 + +0.5
2,277,357 - +1.5

Or see this region's nucleotide sequence