Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08240

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08235 and AO353_08240 are separated by 113 nucleotidesAO353_08240 and AO353_08245 overlap by 4 nucleotidesAO353_08245 and AO353_08250 overlap by 4 nucleotides AO353_08235: AO353_08235 - RNA polymerase subunit sigma-70, at 1,810,014 to 1,810,868 _08235 AO353_08240: AO353_08240 - cell division protein FtsX, at 1,810,982 to 1,812,004 _08240 AO353_08245: AO353_08245 - cell division ATP-binding protein FtsE, at 1,812,001 to 1,812,672 _08245 AO353_08250: AO353_08250 - signal recognition particle-docking protein FtsY, at 1,812,669 to 1,814,225 _08250 Position (kb) 1810 1811 1812 1813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1810.015 kb on + strandat 1810.892 kb on - strandat 1810.892 kb on - strandat 1810.892 kb on - strandat 1810.892 kb on - strandat 1810.952 kb on - strandat 1810.952 kb on - strandat 1810.952 kb on - strandat 1810.952 kb on - strandat 1810.952 kb on - strandat 1810.952 kb on - strandat 1810.952 kb on - strandat 1810.967 kb on - strandat 1810.967 kb on - strandat 1810.967 kb on - strandat 1810.967 kb on - strandat 1810.967 kb on - strandat 1810.967 kb on - strandat 1810.967 kb on - strandat 1810.976 kb on - strandat 1810.976 kb on - strandat 1810.976 kb on - strandat 1810.976 kb on - strandat 1810.984 kb on - strandat 1810.984 kb on - strandat 1810.984 kb on - strandat 1810.984 kb on - strandat 1811.038 kb on - strandat 1811.107 kb on + strand, within AO353_08240at 1811.108 kb on - strand, within AO353_08240at 1811.115 kb on + strand, within AO353_08240at 1811.115 kb on + strand, within AO353_08240at 1811.115 kb on + strand, within AO353_08240at 1811.115 kb on + strand, within AO353_08240at 1811.115 kb on + strand, within AO353_08240at 1811.115 kb on + strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.116 kb on - strand, within AO353_08240at 1811.205 kb on + strand, within AO353_08240at 1811.205 kb on + strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.206 kb on - strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.207 kb on + strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strandat 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.208 kb on - strand, within AO353_08240at 1811.220 kb on + strand, within AO353_08240at 1811.220 kb on + strand, within AO353_08240at 1811.220 kb on + strand, within AO353_08240at 1811.220 kb on + strand, within AO353_08240at 1811.221 kb on - strand, within AO353_08240at 1811.221 kb on - strand, within AO353_08240at 1811.221 kb on - strand, within AO353_08240at 1811.221 kb on - strand, within AO353_08240at 1811.221 kb on - strand, within AO353_08240at 1811.221 kb on - strand, within AO353_08240at 1811.221 kb on - strand, within AO353_08240at 1811.233 kb on + strand, within AO353_08240at 1811.234 kb on - strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.241 kb on + strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.242 kb on - strand, within AO353_08240at 1811.267 kb on - strand, within AO353_08240at 1811.276 kb on + strand, within AO353_08240at 1811.276 kb on + strand, within AO353_08240at 1811.276 kb on + strand, within AO353_08240at 1811.276 kb on + strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.277 kb on - strand, within AO353_08240at 1811.299 kb on + strand, within AO353_08240at 1811.299 kb on + strand, within AO353_08240at 1811.314 kb on + strand, within AO353_08240at 1811.314 kb on + strand, within AO353_08240at 1811.314 kb on + strand, within AO353_08240at 1811.315 kb on - strand, within AO353_08240at 1811.315 kb on - strand, within AO353_08240at 1811.315 kb on - strand, within AO353_08240at 1811.315 kb on - strand, within AO353_08240at 1811.315 kb on - strand, within AO353_08240at 1811.321 kb on + strand, within AO353_08240at 1811.321 kb on + strand, within AO353_08240at 1811.322 kb on - strand, within AO353_08240at 1811.334 kb on - strand, within AO353_08240at 1811.334 kb on - strand, within AO353_08240at 1811.334 kb on - strand, within AO353_08240at 1811.334 kb on - strand, within AO353_08240at 1811.334 kb on - strand, within AO353_08240at 1811.417 kb on + strand, within AO353_08240at 1811.417 kb on + strand, within AO353_08240at 1811.417 kb on + strand, within AO353_08240at 1811.418 kb on - strand, within AO353_08240at 1811.418 kb on - strand, within AO353_08240at 1811.438 kb on + strand, within AO353_08240at 1811.438 kb on + strand, within AO353_08240at 1811.438 kb on + strand, within AO353_08240at 1811.439 kb on - strand, within AO353_08240at 1811.439 kb on - strand, within AO353_08240at 1811.439 kb on - strand, within AO353_08240at 1811.439 kb on - strand, within AO353_08240at 1811.439 kb on - strand, within AO353_08240at 1811.468 kb on + strand, within AO353_08240at 1811.468 kb on + strand, within AO353_08240at 1811.469 kb on - strand, within AO353_08240at 1811.469 kb on - strand, within AO353_08240at 1811.469 kb on - strand, within AO353_08240at 1811.469 kb on - strand, within AO353_08240at 1811.469 kb on - strand, within AO353_08240at 1811.507 kb on - strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.610 kb on + strand, within AO353_08240at 1811.611 kb on - strand, within AO353_08240at 1811.611 kb on - strand, within AO353_08240at 1811.611 kb on - strand, within AO353_08240at 1811.611 kb on - strand, within AO353_08240at 1811.611 kb on - strand, within AO353_08240at 1811.611 kb on - strand, within AO353_08240at 1811.611 kb on - strand, within AO353_08240at 1811.624 kb on + strand, within AO353_08240at 1811.624 kb on + strand, within AO353_08240at 1811.624 kb on + strand, within AO353_08240at 1811.624 kb on + strand, within AO353_08240at 1811.625 kb on - strand, within AO353_08240at 1811.625 kb on - strand, within AO353_08240at 1811.694 kb on + strand, within AO353_08240at 1811.694 kb on + strand, within AO353_08240at 1811.695 kb on - strand, within AO353_08240at 1811.695 kb on - strand, within AO353_08240at 1811.695 kb on - strand, within AO353_08240at 1811.695 kb on - strand, within AO353_08240at 1812.005 kb on - strandat 1812.390 kb on + strand, within AO353_08245at 1812.391 kb on - strand, within AO353_08245at 1812.391 kb on - strand, within AO353_08245at 1812.529 kb on + strand, within AO353_08245at 1812.530 kb on - strand, within AO353_08245at 1812.546 kb on + strand, within AO353_08245at 1812.546 kb on + strand, within AO353_08245at 1812.547 kb on - strand, within AO353_08245at 1812.552 kb on + strand, within AO353_08245

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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1,810,015 + -0.6
1,810,892 - -0.4
1,810,892 - -0.1
1,810,892 - -0.3
1,810,892 - -1.6
1,810,952 - -1.8
1,810,952 - -0.7
1,810,952 - -0.6
1,810,952 - +0.4
1,810,952 - -0.3
1,810,952 - -1.0
1,810,952 - -1.7
1,810,967 - -0.6
1,810,967 - +0.8
1,810,967 - +0.1
1,810,967 - -1.1
1,810,967 - -0.2
1,810,967 - -1.0
1,810,967 - +0.3
1,810,976 - -0.9
1,810,976 - -0.9
1,810,976 - +0.9
1,810,976 - -0.2
1,810,984 - -0.1
1,810,984 - -1.2
1,810,984 - -2.3
1,810,984 - +1.1
1,811,038 - -1.9
1,811,107 + AO353_08240 0.12 +0.0
1,811,108 - AO353_08240 0.12 -0.4
1,811,115 + AO353_08240 0.13 +0.1
1,811,115 + AO353_08240 0.13 -3.1
1,811,115 + AO353_08240 0.13 +0.6
1,811,115 + AO353_08240 0.13 -0.7
1,811,115 + AO353_08240 0.13 +0.4
1,811,115 + AO353_08240 0.13 -1.8
1,811,116 - AO353_08240 0.13 -0.9
1,811,116 - AO353_08240 0.13 -1.4
1,811,116 - AO353_08240 0.13 -0.2
1,811,116 - AO353_08240 0.13 -2.3
1,811,116 - AO353_08240 0.13 -0.5
1,811,116 - AO353_08240 0.13 -2.1
1,811,116 - AO353_08240 0.13 -0.2
1,811,116 - AO353_08240 0.13 +0.9
1,811,205 + AO353_08240 0.22 -1.2
1,811,205 + AO353_08240 0.22 -2.4
1,811,206 - AO353_08240 0.22 -1.8
1,811,206 - AO353_08240 0.22 -1.7
1,811,206 - AO353_08240 0.22 -2.7
1,811,206 - AO353_08240 0.22 -1.1
1,811,206 - AO353_08240 0.22 +0.8
1,811,206 - AO353_08240 0.22 -1.9
1,811,206 - AO353_08240 0.22 -2.2
1,811,206 - AO353_08240 0.22 -0.7
1,811,207 + AO353_08240 0.22 +0.6
1,811,207 + AO353_08240 0.22 -1.2
1,811,207 + AO353_08240 0.22 -0.2
1,811,207 + AO353_08240 0.22 -1.0
1,811,207 + AO353_08240 0.22 -0.9
1,811,207 + AO353_08240 0.22 -1.6
1,811,207 + AO353_08240 0.22 -1.0
1,811,207 + AO353_08240 0.22 -0.4
1,811,207 + AO353_08240 0.22 -0.3
1,811,208 - AO353_08240 0.22 -2.4
1,811,208 - AO353_08240 0.22 -1.2
1,811,208 - AO353_08240 0.22 -1.0
1,811,208 - AO353_08240 0.22 -1.0
1,811,208 - +2.1
1,811,208 - AO353_08240 0.22 +2.1
1,811,208 - AO353_08240 0.22 -0.2
1,811,208 - AO353_08240 0.22 -0.9
1,811,208 - AO353_08240 0.22 -1.2
1,811,208 - AO353_08240 0.22 +0.3
1,811,220 + AO353_08240 0.23 -2.3
1,811,220 + AO353_08240 0.23 -0.7
1,811,220 + AO353_08240 0.23 -1.9
1,811,220 + AO353_08240 0.23 -0.7
1,811,221 - AO353_08240 0.23 -2.6
1,811,221 - AO353_08240 0.23 -0.2
1,811,221 - AO353_08240 0.23 -1.3
1,811,221 - AO353_08240 0.23 -2.2
1,811,221 - AO353_08240 0.23 +0.1
1,811,221 - AO353_08240 0.23 -0.9
1,811,221 - AO353_08240 0.23 -0.4
1,811,233 + AO353_08240 0.25 -2.4
1,811,234 - AO353_08240 0.25 -1.6
1,811,241 + AO353_08240 0.25 -0.9
1,811,241 + AO353_08240 0.25 -0.9
1,811,241 + AO353_08240 0.25 -2.6
1,811,241 + AO353_08240 0.25 -0.9
1,811,241 + AO353_08240 0.25 -2.3
1,811,241 + AO353_08240 0.25 -1.7
1,811,241 + AO353_08240 0.25 -2.1
1,811,241 + AO353_08240 0.25 -1.4
1,811,241 + AO353_08240 0.25 -0.1
1,811,241 + AO353_08240 0.25 -0.7
1,811,241 + AO353_08240 0.25 -1.6
1,811,241 + AO353_08240 0.25 -1.2
1,811,241 + AO353_08240 0.25 -2.4
1,811,241 + AO353_08240 0.25 -3.0
1,811,241 + AO353_08240 0.25 -2.2
1,811,241 + AO353_08240 0.25 -0.9
1,811,241 + AO353_08240 0.25 -0.7
1,811,241 + AO353_08240 0.25 -2.2
1,811,241 + AO353_08240 0.25 -1.8
1,811,241 + AO353_08240 0.25 -1.8
1,811,241 + AO353_08240 0.25 +0.7
1,811,241 + AO353_08240 0.25 -0.4
1,811,241 + AO353_08240 0.25 -2.3
1,811,241 + AO353_08240 0.25 -0.6
1,811,242 - AO353_08240 0.25 +1.9
1,811,242 - AO353_08240 0.25 +1.7
1,811,242 - AO353_08240 0.25 -0.5
1,811,242 - AO353_08240 0.25 -1.3
1,811,242 - AO353_08240 0.25 -1.2
1,811,242 - AO353_08240 0.25 -0.4
1,811,242 - AO353_08240 0.25 -1.9
1,811,242 - AO353_08240 0.25 -0.4
1,811,242 - AO353_08240 0.25 -0.1
1,811,242 - AO353_08240 0.25 -1.8
1,811,242 - AO353_08240 0.25 -1.6
1,811,242 - AO353_08240 0.25 -1.3
1,811,242 - AO353_08240 0.25 -1.8
1,811,242 - AO353_08240 0.25 -2.3
1,811,242 - AO353_08240 0.25 -2.5
1,811,242 - AO353_08240 0.25 -2.0
1,811,242 - AO353_08240 0.25 +0.3
1,811,242 - AO353_08240 0.25 -2.9
1,811,242 - AO353_08240 0.25 +0.6
1,811,242 - AO353_08240 0.25 -1.0
1,811,242 - AO353_08240 0.25 +1.5
1,811,267 - AO353_08240 0.28 -1.3
1,811,276 + AO353_08240 0.29 -0.9
1,811,276 + AO353_08240 0.29 -1.0
1,811,276 + AO353_08240 0.29 -0.7
1,811,276 + AO353_08240 0.29 +0.8
1,811,277 - AO353_08240 0.29 -0.8
1,811,277 - AO353_08240 0.29 -1.1
1,811,277 - AO353_08240 0.29 -0.2
1,811,277 - AO353_08240 0.29 -1.9
1,811,277 - AO353_08240 0.29 -0.6
1,811,277 - AO353_08240 0.29 +0.1
1,811,277 - AO353_08240 0.29 -1.9
1,811,277 - AO353_08240 0.29 -0.5
1,811,277 - AO353_08240 0.29 -0.2
1,811,277 - AO353_08240 0.29 -1.6
1,811,299 + AO353_08240 0.31 -1.1
1,811,299 + AO353_08240 0.31 -2.5
1,811,314 + AO353_08240 0.32 +0.1
1,811,314 + AO353_08240 0.32 +0.1
1,811,314 + AO353_08240 0.32 -3.2
1,811,315 - AO353_08240 0.33 -1.2
1,811,315 - AO353_08240 0.33 -2.2
1,811,315 - AO353_08240 0.33 -1.6
1,811,315 - AO353_08240 0.33 -0.2
1,811,315 - AO353_08240 0.33 -1.5
1,811,321 + AO353_08240 0.33 -0.7
1,811,321 + AO353_08240 0.33 -0.2
1,811,322 - AO353_08240 0.33 -0.7
1,811,334 - AO353_08240 0.34 +0.8
1,811,334 - AO353_08240 0.34 -1.3
1,811,334 - AO353_08240 0.34 -1.0
1,811,334 - AO353_08240 0.34 -2.4
1,811,334 - AO353_08240 0.34 -2.3
1,811,417 + AO353_08240 0.43 -0.2
1,811,417 + AO353_08240 0.43 +0.1
1,811,417 + AO353_08240 0.43 +0.2
1,811,418 - AO353_08240 0.43 -2.7
1,811,418 - AO353_08240 0.43 +0.1
1,811,438 + AO353_08240 0.45 -0.9
1,811,438 + AO353_08240 0.45 -1.3
1,811,438 + AO353_08240 0.45 -1.1
1,811,439 - AO353_08240 0.45 -1.0
1,811,439 - AO353_08240 0.45 -1.2
1,811,439 - AO353_08240 0.45 -0.6
1,811,439 - AO353_08240 0.45 -0.9
1,811,439 - AO353_08240 0.45 -1.7
1,811,468 + AO353_08240 0.48 +0.4
1,811,468 + AO353_08240 0.48 -1.5
1,811,469 - AO353_08240 0.48 -1.1
1,811,469 - AO353_08240 0.48 -1.0
1,811,469 - AO353_08240 0.48 -0.2
1,811,469 - AO353_08240 0.48 +0.1
1,811,469 - AO353_08240 0.48 -3.3
1,811,507 - AO353_08240 0.51 -2.0
1,811,610 + AO353_08240 0.61 -0.7
1,811,610 + AO353_08240 0.61 -1.9
1,811,610 + AO353_08240 0.61 -2.4
1,811,610 + AO353_08240 0.61 -0.4
1,811,610 + AO353_08240 0.61 -1.9
1,811,610 + AO353_08240 0.61 -1.7
1,811,610 + AO353_08240 0.61 +0.4
1,811,610 + AO353_08240 0.61 -1.0
1,811,610 + AO353_08240 0.61 -2.1
1,811,610 + AO353_08240 0.61 -0.9
1,811,611 - AO353_08240 0.61 -2.7
1,811,611 - AO353_08240 0.61 -2.3
1,811,611 - AO353_08240 0.61 -1.4
1,811,611 - AO353_08240 0.61 -0.4
1,811,611 - AO353_08240 0.61 -1.6
1,811,611 - AO353_08240 0.61 -1.2
1,811,611 - AO353_08240 0.61 -1.3
1,811,624 + AO353_08240 0.63 +0.3
1,811,624 + AO353_08240 0.63 -1.0
1,811,624 + AO353_08240 0.63 -2.3
1,811,624 + AO353_08240 0.63 -0.2
1,811,625 - AO353_08240 0.63 -1.3
1,811,625 - AO353_08240 0.63 +1.1
1,811,694 + AO353_08240 0.70 -0.0
1,811,694 + AO353_08240 0.70 -0.4
1,811,695 - AO353_08240 0.70 -1.7
1,811,695 - AO353_08240 0.70 +0.1
1,811,695 - AO353_08240 0.70 -1.9
1,811,695 - AO353_08240 0.70 -0.4
1,812,005 - -2.1
1,812,390 + AO353_08245 0.58 +0.1
1,812,391 - AO353_08245 0.58 -1.3
1,812,391 - AO353_08245 0.58 -2.7
1,812,529 + AO353_08245 0.79 -1.4
1,812,530 - AO353_08245 0.79 -0.4
1,812,546 + AO353_08245 0.81 -1.2
1,812,546 + AO353_08245 0.81 -2.6
1,812,547 - AO353_08245 0.81 -0.2
1,812,552 + AO353_08245 0.82 -1.2

Or see this region's nucleotide sequence