Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05110 and AO353_05115 are separated by 124 nucleotides AO353_05115 and AO353_05120 are separated by 125 nucleotides AO353_05120 and AO353_05125 are separated by 22 nucleotides AO353_05125 and AO353_05130 are separated by 114 nucleotides AO353_05130 and AO353_05135 overlap by 4 nucleotides
AO353_05110: AO353_05110 - histidinol dehydrogenase, at 1,128,830 to 1,130,155
_05110
AO353_05115: AO353_05115 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 1,130,280 to 1,130,915
_05115
AO353_05120: AO353_05120 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,131,041 to 1,132,306
_05120
AO353_05125: AO353_05125 - BolA family transcriptional regulator, at 1,132,329 to 1,132,580
_05125
AO353_05130: AO353_05130 - anti-anti-sigma factor, at 1,132,695 to 1,133,000
_05130
AO353_05135: AO353_05135 - toluene tolerance protein, at 1,132,997 to 1,133,656
_05135
Position (kb) 1131
1132
1133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.169 kb on + strand at 1130.170 kb on - strand at 1130.170 kb on - strand at 1130.170 kb on - strand at 1130.170 kb on - strand at 1130.170 kb on - strand at 1130.170 kb on - strand at 1130.170 kb on - strand at 1130.237 kb on - strand at 1130.247 kb on + strand at 1130.506 kb on + strand, within AO353_05115 at 1130.506 kb on + strand, within AO353_05115 at 1130.506 kb on + strand, within AO353_05115 at 1130.506 kb on + strand, within AO353_05115 at 1130.506 kb on + strand, within AO353_05115 at 1130.507 kb on - strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.508 kb on + strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.509 kb on - strand, within AO353_05115 at 1130.545 kb on + strand, within AO353_05115 at 1130.546 kb on - strand, within AO353_05115 at 1130.548 kb on + strand, within AO353_05115 at 1130.548 kb on + strand, within AO353_05115 at 1130.548 kb on + strand, within AO353_05115 at 1130.548 kb on + strand, within AO353_05115 at 1130.548 kb on + strand, within AO353_05115 at 1130.549 kb on - strand, within AO353_05115 at 1130.549 kb on - strand, within AO353_05115 at 1130.668 kb on + strand, within AO353_05115 at 1130.669 kb on - strand, within AO353_05115 at 1130.686 kb on + strand, within AO353_05115 at 1130.686 kb on + strand, within AO353_05115 at 1130.706 kb on - strand, within AO353_05115 at 1130.743 kb on + strand, within AO353_05115 at 1130.743 kb on + strand, within AO353_05115 at 1130.743 kb on + strand, within AO353_05115 at 1130.744 kb on - strand, within AO353_05115 at 1130.744 kb on - strand, within AO353_05115 at 1130.744 kb on - strand, within AO353_05115 at 1130.744 kb on - strand, within AO353_05115 at 1130.744 kb on - strand, within AO353_05115 at 1130.744 kb on - strand, within AO353_05115 at 1130.932 kb on + strand at 1130.933 kb on - strand at 1130.940 kb on + strand at 1130.940 kb on + strand at 1130.940 kb on + strand at 1130.940 kb on + strand at 1130.940 kb on + strand at 1130.940 kb on + strand at 1130.940 kb on + strand at 1130.941 kb on - strand at 1130.941 kb on - strand at 1130.941 kb on - strand at 1130.941 kb on - strand at 1130.999 kb on + strand at 1132.371 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.421 kb on - strand, within AO353_05125 at 1132.513 kb on - strand, within AO353_05125 at 1132.513 kb on - strand, within AO353_05125 at 1132.525 kb on - strand, within AO353_05125 at 1132.525 kb on - strand, within AO353_05125 at 1132.525 kb on - strand, within AO353_05125 at 1132.625 kb on - strand at 1132.625 kb on - strand at 1132.625 kb on - strand at 1132.625 kb on - strand at 1132.656 kb on + strand at 1132.657 kb on - strand at 1132.683 kb on + strand at 1132.683 kb on + strand at 1132.683 kb on + strand at 1132.684 kb on - strand at 1132.684 kb on - strand at 1132.684 kb on - strand at 1132.684 kb on - strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.685 kb on + strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.686 kb on - strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.692 kb on + strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.693 kb on - strand at 1132.696 kb on + strand at 1132.696 kb on + strand at 1132.696 kb on + strand at 1132.696 kb on + strand at 1132.697 kb on - strand at 1132.697 kb on - strand at 1132.697 kb on - strand at 1132.697 kb on - strand at 1132.697 kb on - strand at 1132.866 kb on + strand, within AO353_05130 at 1132.866 kb on + strand, within AO353_05130 at 1132.866 kb on + strand, within AO353_05130 at 1132.867 kb on - strand, within AO353_05130 at 1133.129 kb on + strand, within AO353_05135 at 1133.170 kb on + strand, within AO353_05135 at 1133.208 kb on + strand, within AO353_05135 at 1133.209 kb on - strand, within AO353_05135 at 1133.209 kb on - strand, within AO353_05135 at 1133.209 kb on - strand, within AO353_05135 at 1133.209 kb on - strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.220 kb on + strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.221 kb on - strand, within AO353_05135 at 1133.299 kb on + strand, within AO353_05135 at 1133.300 kb on - strand, within AO353_05135
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 1,130,169 + -1.0 1,130,169 + -1.1 1,130,169 + +0.1 1,130,169 + -0.3 1,130,169 + -0.7 1,130,169 + +0.3 1,130,169 + -1.4 1,130,169 + -0.5 1,130,169 + -0.7 1,130,169 + +0.3 1,130,169 + -0.3 1,130,169 + -1.4 1,130,169 + +1.2 1,130,170 - +0.5 1,130,170 - -1.0 1,130,170 - +0.1 1,130,170 - +0.8 1,130,170 - -0.5 1,130,170 - -0.2 1,130,170 - -0.4 1,130,237 - -0.3 1,130,247 + -1.1 1,130,506 + AO353_05115 0.36 +0.9 1,130,506 + AO353_05115 0.36 +1.2 1,130,506 + AO353_05115 0.36 -0.7 1,130,506 + AO353_05115 0.36 +0.9 1,130,506 + AO353_05115 0.36 -0.1 1,130,507 - AO353_05115 0.36 -1.1 1,130,508 + AO353_05115 0.36 +0.1 1,130,508 + AO353_05115 0.36 -1.7 1,130,508 + AO353_05115 0.36 +1.9 1,130,508 + AO353_05115 0.36 -1.7 1,130,508 + AO353_05115 0.36 +0.3 1,130,508 + AO353_05115 0.36 +0.3 1,130,508 + AO353_05115 0.36 -0.7 1,130,508 + AO353_05115 0.36 -0.4 1,130,508 + AO353_05115 0.36 -2.1 1,130,508 + AO353_05115 0.36 +0.6 1,130,508 + AO353_05115 0.36 -1.2 1,130,508 + AO353_05115 0.36 -0.2 1,130,508 + AO353_05115 0.36 +0.3 1,130,508 + AO353_05115 0.36 -0.7 1,130,508 + AO353_05115 0.36 -0.7 1,130,508 + AO353_05115 0.36 -2.0 1,130,508 + AO353_05115 0.36 -0.7 1,130,508 + AO353_05115 0.36 -0.8 1,130,508 + AO353_05115 0.36 +0.3 1,130,508 + AO353_05115 0.36 +0.5 1,130,508 + AO353_05115 0.36 -0.4 1,130,508 + AO353_05115 0.36 -0.9 1,130,508 + AO353_05115 0.36 -0.6 1,130,508 + AO353_05115 0.36 -1.1 1,130,509 - AO353_05115 0.36 +1.2 1,130,509 - AO353_05115 0.36 -0.4 1,130,509 - AO353_05115 0.36 -0.2 1,130,509 - AO353_05115 0.36 +0.2 1,130,509 - AO353_05115 0.36 -1.5 1,130,509 - AO353_05115 0.36 +0.1 1,130,509 - AO353_05115 0.36 -1.4 1,130,509 - AO353_05115 0.36 +0.8 1,130,509 - AO353_05115 0.36 -0.7 1,130,509 - AO353_05115 0.36 -0.9 1,130,509 - AO353_05115 0.36 -0.9 1,130,509 - AO353_05115 0.36 -0.8 1,130,509 - AO353_05115 0.36 -1.4 1,130,509 - AO353_05115 0.36 +0.8 1,130,509 - AO353_05115 0.36 -0.0 1,130,509 - AO353_05115 0.36 -0.2 1,130,509 - AO353_05115 0.36 +0.6 1,130,509 - AO353_05115 0.36 +1.9 1,130,509 - AO353_05115 0.36 -1.0 1,130,545 + AO353_05115 0.42 +0.9 1,130,546 - AO353_05115 0.42 -0.7 1,130,548 + AO353_05115 0.42 -0.9 1,130,548 + AO353_05115 0.42 -0.2 1,130,548 + AO353_05115 0.42 +0.7 1,130,548 + AO353_05115 0.42 +0.7 1,130,548 + AO353_05115 0.42 -1.6 1,130,549 - AO353_05115 0.42 -1.8 1,130,549 - AO353_05115 0.42 -1.2 1,130,668 + AO353_05115 0.61 -1.2 1,130,669 - AO353_05115 0.61 -0.3 1,130,686 + AO353_05115 0.64 -0.5 1,130,686 + AO353_05115 0.64 -0.8 1,130,706 - AO353_05115 0.67 -0.1 1,130,743 + AO353_05115 0.73 +0.3 1,130,743 + AO353_05115 0.73 -0.9 1,130,743 + AO353_05115 0.73 -0.2 1,130,744 - AO353_05115 0.73 -1.0 1,130,744 - AO353_05115 0.73 +0.2 1,130,744 - AO353_05115 0.73 +0.1 1,130,744 - AO353_05115 0.73 -0.5 1,130,744 - AO353_05115 0.73 -1.5 1,130,744 - AO353_05115 0.73 -0.3 1,130,932 + +0.9 1,130,933 - -2.3 1,130,940 + -0.9 1,130,940 + +0.3 1,130,940 + -0.1 1,130,940 + -0.5 1,130,940 + -1.7 1,130,940 + -0.2 1,130,940 + -0.7 1,130,941 - +0.9 1,130,941 - +0.9 1,130,941 - +0.8 1,130,941 - -0.2 1,130,999 + -0.7 1,132,371 - AO353_05125 0.17 +0.4 1,132,421 - AO353_05125 0.37 -0.2 1,132,421 - AO353_05125 0.37 +0.8 1,132,421 - AO353_05125 0.37 -0.4 1,132,421 - AO353_05125 0.37 +0.2 1,132,421 - AO353_05125 0.37 +0.6 1,132,421 - AO353_05125 0.37 +0.5 1,132,421 - AO353_05125 0.37 -0.9 1,132,421 - AO353_05125 0.37 +2.1 1,132,421 - AO353_05125 0.37 +1.6 1,132,513 - AO353_05125 0.73 +1.8 1,132,513 - AO353_05125 0.73 -1.5 1,132,525 - AO353_05125 0.78 +0.7 1,132,525 - AO353_05125 0.78 +0.3 1,132,525 - AO353_05125 0.78 +1.2 1,132,625 - -0.9 1,132,625 - -0.4 1,132,625 - +1.5 1,132,625 - +0.4 1,132,656 + -1.4 1,132,657 - -2.4 1,132,683 + -0.8 1,132,683 + -0.4 1,132,683 + -0.7 1,132,684 - +0.0 1,132,684 - -0.4 1,132,684 - -1.2 1,132,684 - +0.3 1,132,685 + +0.9 1,132,685 + +0.2 1,132,685 + +0.3 1,132,685 + -2.0 1,132,685 + +1.9 1,132,685 + -1.1 1,132,685 + -0.1 1,132,685 + -0.2 1,132,685 + +2.4 1,132,685 + -0.6 1,132,685 + +0.2 1,132,685 + -0.1 1,132,686 - +0.0 1,132,686 - -0.1 1,132,686 - -2.3 1,132,686 - +0.3 1,132,686 - -0.2 1,132,686 - +2.5 1,132,686 - -0.4 1,132,686 - -0.5 1,132,686 - -0.7 1,132,686 - +0.1 1,132,692 + -0.4 1,132,692 + -0.6 1,132,692 + -0.3 1,132,692 + +0.5 1,132,692 + +0.7 1,132,692 + +1.3 1,132,692 + -1.5 1,132,692 + -0.2 1,132,692 + +0.1 1,132,692 + -1.4 1,132,692 + -0.8 1,132,692 + -0.0 1,132,692 + +0.2 1,132,692 + -0.2 1,132,692 + +0.7 1,132,692 + -2.1 1,132,692 + -0.1 1,132,692 + +0.0 1,132,693 - -0.1 1,132,693 - -0.4 1,132,693 - -1.2 1,132,693 - -0.1 1,132,693 - -0.9 1,132,693 - -0.0 1,132,693 - -1.1 1,132,693 - -0.9 1,132,693 - +0.6 1,132,693 - -0.1 1,132,693 - -3.0 1,132,693 - -1.2 1,132,693 - -1.5 1,132,693 - -0.9 1,132,693 - -1.9 1,132,696 + +1.1 1,132,696 + -1.2 1,132,696 + +1.8 1,132,696 + +0.5 1,132,697 - +1.2 1,132,697 - -0.1 1,132,697 - -0.1 1,132,697 - -0.8 1,132,697 - +0.9 1,132,866 + AO353_05130 0.56 -1.1 1,132,866 + AO353_05130 0.56 +1.2 1,132,866 + AO353_05130 0.56 -1.1 1,132,867 - AO353_05130 0.56 -1.8 1,133,129 + AO353_05135 0.20 -1.1 1,133,170 + AO353_05135 0.26 -1.4 1,133,208 + AO353_05135 0.32 -1.0 1,133,209 - AO353_05135 0.32 -1.8 1,133,209 - AO353_05135 0.32 -1.1 1,133,209 - AO353_05135 0.32 -1.1 1,133,209 - AO353_05135 0.32 -2.1 1,133,220 + AO353_05135 0.34 -2.1 1,133,220 + AO353_05135 0.34 -1.2 1,133,220 + AO353_05135 0.34 -1.8 1,133,220 + AO353_05135 0.34 -2.4 1,133,220 + AO353_05135 0.34 -2.7 1,133,220 + AO353_05135 0.34 -1.5 1,133,220 + AO353_05135 0.34 -0.1 1,133,220 + AO353_05135 0.34 -0.4 1,133,220 + AO353_05135 0.34 -0.4 1,133,220 + AO353_05135 0.34 -0.7 1,133,221 - AO353_05135 0.34 -1.8 1,133,221 - AO353_05135 0.34 -1.7 1,133,221 - AO353_05135 0.34 -0.1 1,133,221 - AO353_05135 0.34 -0.7 1,133,221 - AO353_05135 0.34 -1.1 1,133,221 - AO353_05135 0.34 -0.7 1,133,221 - AO353_05135 0.34 -1.2 1,133,221 - AO353_05135 0.34 +0.2 1,133,299 + AO353_05135 0.46 -1.2 1,133,300 - AO353_05135 0.46 -2.0
Or see this region's nucleotide sequence