Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04430 and AO353_04435 are separated by 148 nucleotides AO353_04435 and AO353_04440 are separated by 39 nucleotides AO353_04440 and AO353_04445 are separated by 435 nucleotides
AO353_04430: AO353_04430 - DNA mismatch repair protein MutT, at 952,967 to 953,566
_04430
AO353_04435: AO353_04435 - ADP-ribose pyrophosphatase, at 953,715 to 954,266
_04435
AO353_04440: AO353_04440 - hypothetical protein, at 954,306 to 954,809
_04440
AO353_04445: AO353_04445 - GntR family transcriptional regulator, at 955,245 to 955,976
_04445
Position (kb) 954
955 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.473 kb on + strand, within AO353_04430 at 953.473 kb on + strand, within AO353_04430 at 953.521 kb on + strand at 953.552 kb on + strand at 953.552 kb on + strand at 953.552 kb on + strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.553 kb on - strand at 953.584 kb on + strand at 953.585 kb on - strand at 953.585 kb on - strand at 953.585 kb on - strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.588 kb on + strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.589 kb on - strand at 953.688 kb on + strand at 953.688 kb on + strand at 953.688 kb on + strand at 953.689 kb on - strand at 953.694 kb on + strand at 953.695 kb on - strand at 953.695 kb on - strand at 953.695 kb on - strand at 953.784 kb on + strand, within AO353_04435 at 953.784 kb on + strand, within AO353_04435 at 953.784 kb on + strand, within AO353_04435 at 953.828 kb on + strand, within AO353_04435 at 953.828 kb on + strand, within AO353_04435 at 953.872 kb on + strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 953.873 kb on - strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.012 kb on + strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.013 kb on - strand, within AO353_04435 at 954.014 kb on + strand, within AO353_04435 at 954.014 kb on + strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.015 kb on - strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.052 kb on + strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.053 kb on - strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.178 kb on + strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.179 kb on - strand, within AO353_04435 at 954.205 kb on + strand, within AO353_04435 at 954.206 kb on - strand, within AO353_04435 at 954.264 kb on + strand at 954.264 kb on + strand at 954.264 kb on + strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.271 kb on + strand at 954.271 kb on + strand at 954.278 kb on - strand at 954.278 kb on - strand at 954.285 kb on - strand at 954.285 kb on - strand at 954.304 kb on + strand at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.785 kb on + strand at 954.786 kb on - strand at 954.786 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.892 kb on - strand at 954.892 kb on - strand at 954.983 kb on + strand at 954.983 kb on + strand at 954.984 kb on - strand at 954.985 kb on + strand at 954.985 kb on + strand at 954.986 kb on - strand at 955.025 kb on + strand at 955.026 kb on - strand at 955.026 kb on - strand at 955.066 kb on + strand at 955.067 kb on - strand at 955.067 kb on - strand at 955.090 kb on + strand at 955.091 kb on - strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.296 kb on + strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.632 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.665 kb on - strand, within AO353_04445 at 955.752 kb on + strand, within AO353_04445 at 955.753 kb on - strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 953,473 + AO353_04430 0.84 -1.7 953,473 + AO353_04430 0.84 +0.0 953,521 + +0.3 953,552 + +0.1 953,552 + +1.7 953,552 + -0.0 953,553 - +0.9 953,553 - +0.2 953,553 - +1.2 953,553 - -0.4 953,553 - +0.2 953,553 - +1.7 953,584 + -1.1 953,585 - +0.4 953,585 - -0.4 953,585 - -0.6 953,588 + -1.2 953,588 + +0.3 953,588 + +0.3 953,588 + -0.3 953,588 + +0.6 953,588 + +0.1 953,589 - -1.1 953,589 - +1.9 953,589 - -1.6 953,589 - +0.0 953,688 + +1.3 953,688 + -0.3 953,688 + +0.1 953,689 - -1.0 953,694 + +1.0 953,695 - -0.4 953,695 - -1.4 953,695 - +0.9 953,784 + AO353_04435 0.12 +0.7 953,784 + AO353_04435 0.12 -1.4 953,784 + AO353_04435 0.12 +2.2 953,828 + AO353_04435 0.20 -1.4 953,828 + AO353_04435 0.20 +0.5 953,872 + AO353_04435 0.28 -0.7 953,873 - AO353_04435 0.29 -1.2 953,873 - AO353_04435 0.29 -0.7 953,873 - AO353_04435 0.29 -0.4 953,873 - AO353_04435 0.29 +0.1 954,012 + AO353_04435 0.54 +1.3 954,012 + AO353_04435 0.54 -0.4 954,012 + AO353_04435 0.54 +1.3 954,012 + AO353_04435 0.54 -2.0 954,012 + AO353_04435 0.54 -1.8 954,012 + AO353_04435 0.54 -0.4 954,012 + AO353_04435 0.54 -0.0 954,012 + AO353_04435 0.54 +2.5 954,012 + AO353_04435 0.54 +0.3 954,012 + AO353_04435 0.54 -1.6 954,012 + AO353_04435 0.54 -0.8 954,012 + AO353_04435 0.54 -0.2 954,012 + AO353_04435 0.54 -0.2 954,012 + AO353_04435 0.54 -0.3 954,012 + AO353_04435 0.54 -0.2 954,012 + AO353_04435 0.54 -0.4 954,012 + AO353_04435 0.54 -0.1 954,012 + AO353_04435 0.54 -1.5 954,012 + AO353_04435 0.54 +1.9 954,013 - AO353_04435 0.54 +0.2 954,013 - AO353_04435 0.54 +2.5 954,013 - AO353_04435 0.54 -1.6 954,013 - AO353_04435 0.54 +0.1 954,013 - AO353_04435 0.54 -1.1 954,013 - AO353_04435 0.54 -0.6 954,013 - AO353_04435 0.54 +0.3 954,013 - AO353_04435 0.54 -0.1 954,013 - AO353_04435 0.54 -0.2 954,013 - AO353_04435 0.54 +1.7 954,013 - AO353_04435 0.54 -0.3 954,013 - AO353_04435 0.54 +0.3 954,013 - AO353_04435 0.54 -0.7 954,013 - AO353_04435 0.54 -0.2 954,014 + AO353_04435 0.54 +0.7 954,014 + AO353_04435 0.54 -0.1 954,015 - AO353_04435 0.54 -1.0 954,015 - AO353_04435 0.54 +0.2 954,015 - AO353_04435 0.54 -0.4 954,052 + AO353_04435 0.61 +0.0 954,052 + AO353_04435 0.61 +0.3 954,052 + AO353_04435 0.61 -1.7 954,052 + AO353_04435 0.61 -1.7 954,052 + AO353_04435 0.61 -0.4 954,052 + AO353_04435 0.61 +0.3 954,052 + AO353_04435 0.61 -1.4 954,052 + AO353_04435 0.61 -0.1 954,053 - AO353_04435 0.61 +1.5 954,053 - AO353_04435 0.61 -1.0 954,053 - AO353_04435 0.61 -0.6 954,053 - AO353_04435 0.61 -1.7 954,178 + AO353_04435 0.84 +0.6 954,178 + AO353_04435 0.84 -1.8 954,178 + AO353_04435 0.84 -0.8 954,178 + AO353_04435 0.84 +0.1 954,178 + AO353_04435 0.84 -0.0 954,179 - AO353_04435 0.84 +0.2 954,179 - AO353_04435 0.84 +0.4 954,179 - AO353_04435 0.84 -0.1 954,205 + AO353_04435 0.89 -1.2 954,206 - AO353_04435 0.89 -0.4 954,264 + +0.3 954,264 + +0.7 954,264 + -1.0 954,265 - +1.1 954,265 - +0.6 954,265 - -0.9 954,265 - -0.1 954,271 + -0.1 954,271 + -0.6 954,278 - +0.4 954,278 - +0.9 954,285 - +1.9 954,285 - -1.7 954,304 + -1.4 954,462 + AO353_04440 0.31 +0.2 954,462 + AO353_04440 0.31 -1.8 954,462 + AO353_04440 0.31 -1.7 954,522 - AO353_04440 0.43 +0.5 954,522 - AO353_04440 0.43 -0.1 954,522 - AO353_04440 0.43 +1.3 954,522 - AO353_04440 0.43 -1.4 954,537 + AO353_04440 0.46 +0.0 954,537 + AO353_04440 0.46 -0.3 954,537 + AO353_04440 0.46 -0.2 954,538 - AO353_04440 0.46 +0.1 954,538 - AO353_04440 0.46 +1.0 954,538 - AO353_04440 0.46 +1.3 954,538 - AO353_04440 0.46 -0.6 954,538 - AO353_04440 0.46 -0.6 954,763 + -0.8 954,763 + -0.9 954,763 + -0.2 954,763 + +1.3 954,764 - +0.7 954,764 - +0.9 954,764 - -1.0 954,764 - -0.1 954,764 - -0.8 954,764 - -0.3 954,785 + -0.6 954,786 - -0.3 954,786 - -1.8 954,819 - -2.1 954,819 - +1.1 954,819 - -0.1 954,819 - -0.0 954,892 - -1.1 954,892 - +0.5 954,983 + -0.5 954,983 + +0.8 954,984 - +0.1 954,985 + +0.4 954,985 + +1.9 954,986 - -0.5 955,025 + +0.2 955,026 - -0.8 955,026 - +0.2 955,066 + -1.1 955,067 - -0.1 955,067 - +0.2 955,090 + +1.9 955,091 - +0.7 955,238 + -0.2 955,238 + -0.3 955,238 + -1.0 955,239 - +1.0 955,239 - +0.9 955,239 - -0.7 955,239 - +0.7 955,239 - +1.7 955,296 + -0.2 955,297 - -1.2 955,297 - -0.9 955,297 - +0.6 955,632 + AO353_04445 0.53 +1.1 955,664 + AO353_04445 0.57 +0.1 955,664 + AO353_04445 0.57 -0.0 955,664 + AO353_04445 0.57 -1.1 955,665 - AO353_04445 0.57 +0.7 955,752 + AO353_04445 0.69 -1.0 955,753 - AO353_04445 0.69 -0.5 955,758 + AO353_04445 0.70 -0.2 955,758 + AO353_04445 0.70 +0.3
Or see this region's nucleotide sequence