Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04235 and AO353_04240 overlap by 4 nucleotides AO353_04240 and AO353_04245 overlap by 1 nucleotides AO353_04245 and AO353_04250 are separated by 237 nucleotides
AO353_04235: AO353_04235 - chemotaxis protein CheR, at 909,966 to 911,243
_04235
AO353_04240: AO353_04240 - chemotaxis protein CheW, at 911,240 to 911,776
_04240
AO353_04245: AO353_04245 - chemotaxis protein, at 911,776 to 913,398
_04245
AO353_04250: AO353_04250 - hypothetical protein, at 913,636 to 914,004
_04250
Position (kb) 911
912
913
914 Strain fitness (log2 ratio) -2
-1
0
1
2 at 910.802 kb on - strand, within AO353_04235 at 910.910 kb on - strand, within AO353_04235 at 910.910 kb on - strand, within AO353_04235 at 910.962 kb on - strand, within AO353_04235 at 911.107 kb on + strand, within AO353_04235 at 911.107 kb on + strand, within AO353_04235 at 911.243 kb on + strand at 911.243 kb on + strand at 911.243 kb on + strand at 911.244 kb on - strand at 911.244 kb on - strand at 911.376 kb on + strand, within AO353_04240 at 911.499 kb on + strand, within AO353_04240 at 911.499 kb on + strand, within AO353_04240 at 911.500 kb on - strand, within AO353_04240 at 911.784 kb on + strand at 911.929 kb on - strand at 912.128 kb on + strand, within AO353_04245 at 912.128 kb on + strand, within AO353_04245 at 912.128 kb on + strand, within AO353_04245 at 912.128 kb on + strand, within AO353_04245 at 912.128 kb on + strand, within AO353_04245 at 912.128 kb on + strand, within AO353_04245 at 912.129 kb on - strand, within AO353_04245 at 912.129 kb on - strand, within AO353_04245 at 912.129 kb on - strand, within AO353_04245 at 912.129 kb on - strand, within AO353_04245 at 912.197 kb on + strand, within AO353_04245 at 912.198 kb on - strand, within AO353_04245 at 912.846 kb on + strand, within AO353_04245 at 912.846 kb on + strand, within AO353_04245 at 912.847 kb on - strand, within AO353_04245 at 912.980 kb on + strand, within AO353_04245 at 912.996 kb on - strand, within AO353_04245 at 913.012 kb on - strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.028 kb on + strand, within AO353_04245 at 913.029 kb on - strand, within AO353_04245 at 913.029 kb on - strand, within AO353_04245 at 913.029 kb on - strand, within AO353_04245 at 913.029 kb on - strand, within AO353_04245 at 913.029 kb on - strand, within AO353_04245 at 913.098 kb on - strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.139 kb on + strand, within AO353_04245 at 913.140 kb on - strand, within AO353_04245 at 913.140 kb on - strand, within AO353_04245 at 913.140 kb on - strand, within AO353_04245 at 913.140 kb on - strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.208 kb on + strand, within AO353_04245 at 913.209 kb on - strand, within AO353_04245 at 913.209 kb on - strand, within AO353_04245 at 913.209 kb on - strand, within AO353_04245 at 913.209 kb on - strand, within AO353_04245 at 913.209 kb on - strand, within AO353_04245 at 913.244 kb on + strand at 913.245 kb on - strand at 913.245 kb on - strand at 913.245 kb on - strand at 913.245 kb on - strand at 913.245 kb on - strand at 913.245 kb on - strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.247 kb on + strand at 913.248 kb on - strand at 913.248 kb on - strand at 913.248 kb on - strand at 913.248 kb on - strand at 913.248 kb on - strand at 913.352 kb on - strand at 913.352 kb on - strand at 913.352 kb on - strand at 913.352 kb on - strand at 913.352 kb on - strand at 913.433 kb on + strand at 913.433 kb on + strand at 913.433 kb on + strand at 913.433 kb on + strand at 913.433 kb on + strand at 913.433 kb on + strand at 913.434 kb on - strand at 913.434 kb on - strand at 913.434 kb on - strand at 913.434 kb on - strand at 913.434 kb on - strand at 913.434 kb on - strand at 913.435 kb on + strand at 913.436 kb on - strand at 913.457 kb on + strand at 913.457 kb on + strand at 913.458 kb on - strand at 913.458 kb on - strand at 913.459 kb on + strand at 913.459 kb on + strand at 913.459 kb on + strand at 913.459 kb on + strand at 913.459 kb on + strand at 913.460 kb on - strand at 913.477 kb on + strand at 913.477 kb on + strand at 913.477 kb on + strand at 913.477 kb on + strand at 913.477 kb on + strand at 913.477 kb on + strand at 913.477 kb on + strand at 913.478 kb on - strand at 913.478 kb on - strand at 913.478 kb on - strand at 913.478 kb on - strand at 913.478 kb on - strand at 913.478 kb on - strand at 913.478 kb on - strand at 913.478 kb on - strand at 913.525 kb on + strand at 913.590 kb on + strand at 913.590 kb on + strand at 913.591 kb on - strand at 913.637 kb on + strand at 913.637 kb on + strand at 913.637 kb on + strand at 913.637 kb on + strand at 913.637 kb on + strand at 913.638 kb on - strand at 913.638 kb on - strand at 913.638 kb on - strand at 913.638 kb on - strand at 913.867 kb on + strand, within AO353_04250 at 913.899 kb on - strand at 913.899 kb on - strand, within AO353_04250 at 913.955 kb on + strand, within AO353_04250 at 914.010 kb on + strand at 914.010 kb on + strand at 914.010 kb on + strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.011 kb on - strand at 914.047 kb on + strand at 914.067 kb on - strand at 914.068 kb on + strand at 914.068 kb on + strand at 914.069 kb on - strand at 914.069 kb on - strand at 914.078 kb on - strand at 914.078 kb on - strand at 914.093 kb on + strand at 914.094 kb on - strand at 914.094 kb on - strand at 914.094 kb on - strand at 914.154 kb on + strand at 914.155 kb on - strand at 914.155 kb on - strand at 914.182 kb on + strand at 914.182 kb on + strand at 914.182 kb on + strand at 914.182 kb on + strand at 914.182 kb on + strand at 914.182 kb on + strand at 914.182 kb on + strand at 914.182 kb on + strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.183 kb on - strand at 914.186 kb on + strand at 914.187 kb on - strand at 914.200 kb on - strand at 914.236 kb on + strand at 914.236 kb on + strand at 914.236 kb on + strand at 914.284 kb on + strand at 914.284 kb on + strand at 914.285 kb on - strand at 914.285 kb on - strand at 914.306 kb on + strand at 914.307 kb on - strand at 914.307 kb on - strand at 914.307 kb on - strand at 914.336 kb on + strand at 914.336 kb on + strand at 914.336 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 910,802 - AO353_04235 0.65 -0.7 910,910 - AO353_04235 0.74 +1.1 910,910 - AO353_04235 0.74 +1.0 910,962 - AO353_04235 0.78 +0.4 911,107 + AO353_04235 0.89 +0.3 911,107 + AO353_04235 0.89 -0.4 911,243 + +0.1 911,243 + +1.3 911,243 + -0.7 911,244 - +1.0 911,244 - +1.3 911,376 + AO353_04240 0.25 +0.4 911,499 + AO353_04240 0.48 +2.6 911,499 + AO353_04240 0.48 +0.4 911,500 - AO353_04240 0.48 -0.7 911,784 + -2.4 911,929 - -0.5 912,128 + AO353_04245 0.22 -0.7 912,128 + AO353_04245 0.22 +0.0 912,128 + AO353_04245 0.22 -0.3 912,128 + AO353_04245 0.22 -0.9 912,128 + AO353_04245 0.22 +0.9 912,128 + AO353_04245 0.22 +0.4 912,129 - AO353_04245 0.22 +0.4 912,129 - AO353_04245 0.22 -1.3 912,129 - AO353_04245 0.22 -0.9 912,129 - AO353_04245 0.22 -0.5 912,197 + AO353_04245 0.26 -0.4 912,198 - AO353_04245 0.26 +0.2 912,846 + AO353_04245 0.66 -1.8 912,846 + AO353_04245 0.66 +0.5 912,847 - AO353_04245 0.66 -0.4 912,980 + AO353_04245 0.74 +0.6 912,996 - AO353_04245 0.75 -0.8 913,012 - AO353_04245 0.76 -1.3 913,028 + AO353_04245 0.77 +0.7 913,028 + AO353_04245 0.77 +0.5 913,028 + AO353_04245 0.77 -0.9 913,028 + AO353_04245 0.77 +0.6 913,028 + AO353_04245 0.77 +2.5 913,028 + AO353_04245 0.77 +1.3 913,028 + AO353_04245 0.77 -1.9 913,028 + AO353_04245 0.77 -0.9 913,028 + AO353_04245 0.77 -1.3 913,028 + AO353_04245 0.77 -0.0 913,028 + AO353_04245 0.77 +1.5 913,028 + AO353_04245 0.77 -0.3 913,028 + AO353_04245 0.77 -1.2 913,028 + AO353_04245 0.77 -0.9 913,029 - AO353_04245 0.77 -0.6 913,029 - AO353_04245 0.77 +0.1 913,029 - AO353_04245 0.77 +0.7 913,029 - AO353_04245 0.77 -1.9 913,029 - AO353_04245 0.77 -0.2 913,098 - AO353_04245 0.81 -1.7 913,139 + AO353_04245 0.84 +0.7 913,139 + AO353_04245 0.84 -2.1 913,139 + AO353_04245 0.84 -0.6 913,139 + AO353_04245 0.84 -0.4 913,139 + AO353_04245 0.84 -0.7 913,139 + AO353_04245 0.84 -0.4 913,139 + AO353_04245 0.84 +0.0 913,139 + AO353_04245 0.84 -0.5 913,140 - AO353_04245 0.84 +0.9 913,140 - AO353_04245 0.84 -0.8 913,140 - AO353_04245 0.84 +0.6 913,140 - AO353_04245 0.84 -0.1 913,208 + AO353_04245 0.88 -1.1 913,208 + AO353_04245 0.88 -0.2 913,208 + AO353_04245 0.88 -0.1 913,208 + AO353_04245 0.88 -0.2 913,208 + AO353_04245 0.88 -0.9 913,208 + AO353_04245 0.88 -0.3 913,208 + AO353_04245 0.88 -0.9 913,208 + AO353_04245 0.88 +0.9 913,209 - AO353_04245 0.88 -0.3 913,209 - AO353_04245 0.88 -0.1 913,209 - AO353_04245 0.88 -1.4 913,209 - AO353_04245 0.88 +0.2 913,209 - AO353_04245 0.88 +0.1 913,244 + -2.3 913,245 - -0.9 913,245 - +0.6 913,245 - +1.9 913,245 - -1.9 913,245 - +1.9 913,245 - -1.9 913,247 + -1.5 913,247 + +2.0 913,247 + -1.1 913,247 + +1.1 913,247 + -0.4 913,247 + -1.6 913,247 + +0.0 913,247 + -1.0 913,247 + +1.5 913,247 + -1.4 913,248 - -1.1 913,248 - -0.6 913,248 - -0.3 913,248 - -0.2 913,248 - -1.3 913,352 - -0.1 913,352 - +0.0 913,352 - -1.4 913,352 - +0.2 913,352 - -0.4 913,433 + +0.4 913,433 + -2.3 913,433 + +0.8 913,433 + -0.2 913,433 + -1.2 913,433 + -0.4 913,434 - +2.1 913,434 - -0.7 913,434 - +0.1 913,434 - +0.6 913,434 - +0.9 913,434 - +0.6 913,435 + -0.3 913,436 - +0.1 913,457 + -0.2 913,457 + +0.1 913,458 - -0.3 913,458 - +0.7 913,459 + +0.0 913,459 + -1.7 913,459 + -1.5 913,459 + +0.3 913,459 + +0.7 913,460 - +0.0 913,477 + -1.1 913,477 + +0.7 913,477 + +0.1 913,477 + -0.1 913,477 + -2.2 913,477 + +0.6 913,477 + -0.6 913,478 - -1.4 913,478 - +1.3 913,478 - -1.1 913,478 - +0.9 913,478 - -1.4 913,478 - +0.2 913,478 - -0.9 913,478 - -0.6 913,525 + +0.0 913,590 + -0.1 913,590 + -0.7 913,591 - -1.1 913,637 + -0.7 913,637 + -0.0 913,637 + +0.4 913,637 + -2.5 913,637 + +0.2 913,638 - -2.4 913,638 - -0.9 913,638 - -0.4 913,638 - -0.3 913,867 + AO353_04250 0.63 +0.0 913,899 - -0.9 913,899 - AO353_04250 0.71 +0.9 913,955 + AO353_04250 0.86 -1.3 914,010 + +0.6 914,010 + +1.1 914,010 + +0.7 914,011 - +0.3 914,011 - -1.3 914,011 - -1.2 914,011 - +0.2 914,011 - -1.6 914,011 - -1.3 914,011 - -1.1 914,011 - +0.4 914,011 - -0.7 914,011 - -1.6 914,011 - +2.4 914,047 + +0.5 914,067 - +1.3 914,068 + -0.7 914,068 + -0.1 914,069 - +1.3 914,069 - -0.7 914,078 - +2.1 914,078 - -0.1 914,093 + -0.1 914,094 - -0.4 914,094 - -1.6 914,094 - -0.8 914,154 + +1.0 914,155 - -1.6 914,155 - -0.3 914,182 + -0.6 914,182 + -1.7 914,182 + -0.1 914,182 + +0.2 914,182 + -0.1 914,182 + -1.1 914,182 + +0.3 914,182 + -0.6 914,183 - +0.9 914,183 - -0.7 914,183 - -0.7 914,183 - +0.9 914,183 - +0.0 914,183 - +0.3 914,183 - -1.8 914,183 - +0.3 914,183 - +0.5 914,183 - -0.4 914,186 + +1.3 914,187 - +0.0 914,200 - -1.0 914,236 + +1.7 914,236 + -0.9 914,236 + -0.3 914,284 + -0.1 914,284 + +2.4 914,285 - -2.1 914,285 - +0.5 914,306 + -0.6 914,307 - -0.8 914,307 - -0.5 914,307 - -0.7 914,336 + -0.4 914,336 + -0.3 914,336 + +1.9
Or see this region's nucleotide sequence