Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01970

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01960 and AO353_01965 are separated by 226 nucleotidesAO353_01965 and AO353_01970 are separated by 114 nucleotidesAO353_01970 and AO353_01975 are separated by 86 nucleotides AO353_01960: AO353_01960 - hypothetical protein, at 414,766 to 415,386 _01960 AO353_01965: AO353_01965 - competence protein ComEA, at 415,613 to 415,948 _01965 AO353_01970: AO353_01970 - hypothetical protein, at 416,063 to 418,057 _01970 AO353_01975: AO353_01975 - glycosyl transferase, at 418,144 to 419,163 _01975 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 415.120 kb on + strand, within AO353_01960at 415.121 kb on - strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.139 kb on + strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.140 kb on - strand, within AO353_01960at 415.369 kb on + strandat 415.435 kb on + strandat 415.436 kb on - strandat 415.466 kb on + strandat 415.467 kb on - strandat 415.467 kb on - strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.555 kb on + strandat 415.556 kb on - strandat 415.556 kb on - strandat 415.708 kb on + strand, within AO353_01965at 415.708 kb on + strand, within AO353_01965at 415.709 kb on - strand, within AO353_01965at 415.709 kb on - strand, within AO353_01965at 415.836 kb on - strand, within AO353_01965at 415.853 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.894 kb on + strand, within AO353_01965at 415.895 kb on - strand, within AO353_01965at 415.895 kb on - strand, within AO353_01965at 415.930 kb on - strandat 415.935 kb on + strandat 415.936 kb on - strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.942 kb on + strandat 415.948 kb on + strandat 415.949 kb on - strandat 415.949 kb on - strandat 415.949 kb on - strandat 415.971 kb on + strandat 416.010 kb on + strandat 416.039 kb on + strandat 416.040 kb on - strandat 416.088 kb on + strandat 416.088 kb on + strandat 416.089 kb on - strandat 416.089 kb on - strandat 416.121 kb on + strandat 416.163 kb on + strandat 416.163 kb on + strandat 416.163 kb on + strandat 416.164 kb on - strandat 416.164 kb on - strandat 416.164 kb on - strandat 416.291 kb on + strand, within AO353_01970at 416.301 kb on + strand, within AO353_01970at 416.301 kb on + strand, within AO353_01970at 416.302 kb on - strand, within AO353_01970at 416.521 kb on - strand, within AO353_01970at 416.575 kb on + strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.661 kb on - strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.704 kb on + strand, within AO353_01970at 416.705 kb on - strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.899 kb on + strand, within AO353_01970at 416.900 kb on - strand, within AO353_01970at 416.900 kb on - strand, within AO353_01970at 416.900 kb on - strand, within AO353_01970at 416.901 kb on + strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.902 kb on - strand, within AO353_01970at 416.945 kb on + strand, within AO353_01970at 416.946 kb on - strand, within AO353_01970at 417.051 kb on + strand, within AO353_01970at 417.051 kb on + strand, within AO353_01970at 417.052 kb on - strand, within AO353_01970at 417.092 kb on - strandat 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.176 kb on - strand, within AO353_01970at 417.421 kb on + strand, within AO353_01970at 417.421 kb on + strand, within AO353_01970at 417.421 kb on + strand, within AO353_01970at 417.422 kb on - strand, within AO353_01970at 417.422 kb on - strand, within AO353_01970at 417.435 kb on + strand, within AO353_01970at 417.454 kb on + strand, within AO353_01970at 417.454 kb on + strand, within AO353_01970at 417.454 kb on + strand, within AO353_01970at 417.561 kb on + strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.562 kb on - strand, within AO353_01970at 417.642 kb on + strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.643 kb on - strand, within AO353_01970at 417.662 kb on + strand, within AO353_01970at 417.663 kb on - strand, within AO353_01970at 417.696 kb on + strand, within AO353_01970at 417.696 kb on + strand, within AO353_01970at 417.696 kb on + strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.697 kb on - strand, within AO353_01970at 417.742 kb on - strand, within AO353_01970at 417.742 kb on - strand, within AO353_01970at 417.742 kb on - strand, within AO353_01970at 417.748 kb on - strand, within AO353_01970at 417.748 kb on - strand, within AO353_01970at 417.754 kb on + strand, within AO353_01970at 417.755 kb on - strand, within AO353_01970at 417.755 kb on - strand, within AO353_01970at 417.755 kb on - strand, within AO353_01970at 417.782 kb on + strand, within AO353_01970at 417.783 kb on - strand, within AO353_01970at 417.801 kb on - strand, within AO353_01970at 417.823 kb on - strand, within AO353_01970at 417.840 kb on + strand, within AO353_01970at 417.840 kb on + strand, within AO353_01970at 417.841 kb on - strand, within AO353_01970at 417.841 kb on - strandat 417.905 kb on + strandat 417.906 kb on - strandat 417.906 kb on - strandat 417.906 kb on - strandat 417.911 kb on + strandat 417.949 kb on + strandat 417.949 kb on + strandat 417.950 kb on - strandat 418.045 kb on + strandat 418.046 kb on - strandat 418.046 kb on - strandat 418.057 kb on + strandat 418.058 kb on - strandat 418.073 kb on + strandat 418.073 kb on + strandat 418.074 kb on - strandat 418.118 kb on + strandat 418.119 kb on - strandat 418.131 kb on - strandat 418.131 kb on - strandat 418.203 kb on + strandat 418.203 kb on + strandat 418.204 kb on - strandat 418.204 kb on - strandat 418.205 kb on + strandat 418.241 kb on + strandat 418.242 kb on - strandat 418.347 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.371 kb on - strand, within AO353_01975at 418.504 kb on + strand, within AO353_01975at 418.504 kb on + strand, within AO353_01975at 418.504 kb on + strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.505 kb on - strand, within AO353_01975at 418.507 kb on + strand, within AO353_01975at 418.508 kb on - strand, within AO353_01975at 418.560 kb on + strand, within AO353_01975at 418.560 kb on + strand, within AO353_01975at 418.570 kb on + strand, within AO353_01975at 418.570 kb on + strand, within AO353_01975at 418.571 kb on - strand, within AO353_01975at 418.571 kb on - strand, within AO353_01975at 418.571 kb on - strand, within AO353_01975at 418.640 kb on + strand, within AO353_01975at 418.689 kb on + strand, within AO353_01975at 418.689 kb on + strand, within AO353_01975at 418.689 kb on + strand, within AO353_01975at 418.690 kb on - strand, within AO353_01975at 418.690 kb on - strand, within AO353_01975at 418.723 kb on + strand, within AO353_01975at 418.739 kb on + strand, within AO353_01975at 418.739 kb on + strand, within AO353_01975at 418.740 kb on - strand, within AO353_01975at 418.741 kb on + strand, within AO353_01975at 418.741 kb on + strand, within AO353_01975at 418.742 kb on - strand, within AO353_01975at 418.798 kb on - strand, within AO353_01975at 418.845 kb on + strand, within AO353_01975at 418.845 kb on + strand, within AO353_01975at 418.846 kb on - strand, within AO353_01975at 418.846 kb on - strand, within AO353_01975at 418.876 kb on + strand, within AO353_01975at 418.877 kb on - strand, within AO353_01975at 419.005 kb on + strand, within AO353_01975at 419.006 kb on - strand, within AO353_01975at 419.042 kb on - strand, within AO353_01975at 419.052 kb on + strand, within AO353_01975at 419.053 kb on - strand, within AO353_01975

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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415,120 + AO353_01960 0.57 +0.0
415,121 - AO353_01960 0.57 -0.8
415,139 + AO353_01960 0.60 -0.3
415,139 + AO353_01960 0.60 -2.0
415,139 + AO353_01960 0.60 -0.5
415,140 - AO353_01960 0.60 -2.4
415,140 - AO353_01960 0.60 -0.7
415,140 - AO353_01960 0.60 +0.9
415,140 - AO353_01960 0.60 -0.1
415,140 - AO353_01960 0.60 +1.1
415,140 - AO353_01960 0.60 +0.7
415,140 - AO353_01960 0.60 +0.3
415,140 - AO353_01960 0.60 -0.2
415,140 - AO353_01960 0.60 -0.6
415,140 - AO353_01960 0.60 +0.2
415,140 - AO353_01960 0.60 -2.4
415,369 + -0.2
415,435 + +0.6
415,436 - +0.7
415,466 + +0.5
415,467 - -0.2
415,467 - +0.5
415,555 + -0.6
415,555 + +0.3
415,555 + -0.2
415,555 + -1.5
415,556 - -0.8
415,556 - -0.2
415,708 + AO353_01965 0.28 +0.7
415,708 + AO353_01965 0.28 +0.5
415,709 - AO353_01965 0.29 +0.6
415,709 - AO353_01965 0.29 -1.7
415,836 - AO353_01965 0.66 -1.7
415,853 + AO353_01965 0.71 +0.7
415,894 + AO353_01965 0.84 -0.0
415,894 + AO353_01965 0.84 +1.8
415,894 + AO353_01965 0.84 -0.4
415,894 + AO353_01965 0.84 -1.0
415,894 + AO353_01965 0.84 -0.3
415,894 + AO353_01965 0.84 -0.6
415,894 + AO353_01965 0.84 +0.3
415,895 - AO353_01965 0.84 -1.0
415,895 - AO353_01965 0.84 +0.6
415,930 - -0.9
415,935 + +0.5
415,936 - -1.0
415,942 + -1.4
415,942 + -0.8
415,942 + +1.5
415,942 + -0.7
415,948 + -1.5
415,949 - -0.4
415,949 - +0.8
415,949 - +1.4
415,971 + +0.2
416,010 + +0.3
416,039 + +0.5
416,040 - +0.0
416,088 + +0.8
416,088 + -1.4
416,089 - -1.0
416,089 - -1.0
416,121 + -0.2
416,163 + -2.8
416,163 + -0.8
416,163 + -0.2
416,164 - -1.5
416,164 - -1.9
416,164 - +0.3
416,291 + AO353_01970 0.11 -0.3
416,301 + AO353_01970 0.12 -0.2
416,301 + AO353_01970 0.12 -1.5
416,302 - AO353_01970 0.12 -0.5
416,521 - AO353_01970 0.23 -0.5
416,575 + AO353_01970 0.26 -1.2
416,661 - AO353_01970 0.30 -0.8
416,661 - AO353_01970 0.30 -1.0
416,661 - AO353_01970 0.30 -0.2
416,661 - AO353_01970 0.30 -0.2
416,704 + AO353_01970 0.32 -1.0
416,704 + AO353_01970 0.32 -1.1
416,704 + AO353_01970 0.32 -0.5
416,704 + AO353_01970 0.32 -1.2
416,705 - AO353_01970 0.32 -2.4
416,899 + AO353_01970 0.42 -1.4
416,899 + AO353_01970 0.42 -0.5
416,899 + AO353_01970 0.42 +0.6
416,899 + AO353_01970 0.42 -0.3
416,900 - AO353_01970 0.42 +0.2
416,900 - AO353_01970 0.42 -1.5
416,900 - AO353_01970 0.42 -0.8
416,901 + AO353_01970 0.42 -1.5
416,902 - AO353_01970 0.42 -1.2
416,902 - AO353_01970 0.42 -2.3
416,902 - AO353_01970 0.42 -1.4
416,902 - AO353_01970 0.42 -0.4
416,945 + AO353_01970 0.44 -0.2
416,946 - AO353_01970 0.44 -1.2
417,051 + AO353_01970 0.50 -0.5
417,051 + AO353_01970 0.50 -1.8
417,052 - AO353_01970 0.50 +0.8
417,092 - +1.2
417,176 - AO353_01970 0.56 +0.5
417,176 - AO353_01970 0.56 -1.2
417,176 - AO353_01970 0.56 -0.3
417,176 - AO353_01970 0.56 +0.8
417,176 - AO353_01970 0.56 -2.1
417,421 + AO353_01970 0.68 -1.8
417,421 + AO353_01970 0.68 +0.8
417,421 + AO353_01970 0.68 -0.8
417,422 - AO353_01970 0.68 -1.0
417,422 - AO353_01970 0.68 -0.5
417,435 + AO353_01970 0.69 -0.6
417,454 + AO353_01970 0.70 -1.2
417,454 + AO353_01970 0.70 -0.5
417,454 + AO353_01970 0.70 +0.8
417,561 + AO353_01970 0.75 +1.0
417,562 - AO353_01970 0.75 -0.2
417,562 - AO353_01970 0.75 -1.9
417,562 - AO353_01970 0.75 -1.2
417,562 - AO353_01970 0.75 -0.8
417,562 - AO353_01970 0.75 -0.4
417,642 + AO353_01970 0.79 -0.8
417,643 - AO353_01970 0.79 -1.4
417,643 - AO353_01970 0.79 -1.2
417,643 - AO353_01970 0.79 -1.2
417,643 - AO353_01970 0.79 -0.9
417,643 - AO353_01970 0.79 -1.5
417,662 + AO353_01970 0.80 +0.5
417,663 - AO353_01970 0.80 -0.2
417,696 + AO353_01970 0.82 -0.5
417,696 + AO353_01970 0.82 -1.0
417,696 + AO353_01970 0.82 -1.0
417,697 - AO353_01970 0.82 +0.4
417,697 - AO353_01970 0.82 -1.2
417,697 - AO353_01970 0.82 -1.9
417,697 - AO353_01970 0.82 -0.5
417,742 - AO353_01970 0.84 -1.4
417,742 - AO353_01970 0.84 -0.5
417,742 - AO353_01970 0.84 -0.2
417,748 - AO353_01970 0.84 -0.5
417,748 - AO353_01970 0.84 -1.2
417,754 + AO353_01970 0.85 -2.3
417,755 - AO353_01970 0.85 -2.3
417,755 - AO353_01970 0.85 -0.2
417,755 - AO353_01970 0.85 -1.0
417,782 + AO353_01970 0.86 +0.7
417,783 - AO353_01970 0.86 +0.1
417,801 - AO353_01970 0.87 -0.2
417,823 - AO353_01970 0.88 -0.2
417,840 + AO353_01970 0.89 -1.4
417,840 + AO353_01970 0.89 -1.1
417,841 - AO353_01970 0.89 -1.9
417,841 - +1.8
417,905 + +1.5
417,906 - -0.2
417,906 - +0.5
417,906 - -0.9
417,911 + -0.2
417,949 + -0.8
417,949 + -1.8
417,950 - -0.8
418,045 + -0.4
418,046 - +0.1
418,046 - -0.2
418,057 + +0.2
418,058 - -1.8
418,073 + -2.1
418,073 + -1.5
418,074 - +1.0
418,118 + -0.5
418,119 - +0.1
418,131 - +0.0
418,131 - +0.1
418,203 + -0.5
418,203 + -1.2
418,204 - -1.5
418,204 - -1.5
418,205 + -1.9
418,241 + -1.0
418,242 - -1.5
418,347 - AO353_01975 0.20 -1.4
418,371 - AO353_01975 0.22 -1.0
418,371 - AO353_01975 0.22 -1.0
418,371 - AO353_01975 0.22 -1.5
418,371 - AO353_01975 0.22 -1.4
418,371 - AO353_01975 0.22 -1.4
418,504 + AO353_01975 0.35 -0.2
418,504 + AO353_01975 0.35 -1.6
418,504 + AO353_01975 0.35 -0.8
418,505 - AO353_01975 0.35 -1.0
418,505 - AO353_01975 0.35 -1.8
418,505 - AO353_01975 0.35 +0.2
418,505 - AO353_01975 0.35 -1.2
418,505 - AO353_01975 0.35 -1.9
418,505 - AO353_01975 0.35 -1.8
418,507 + AO353_01975 0.36 +1.8
418,508 - AO353_01975 0.36 -0.2
418,560 + AO353_01975 0.41 -1.2
418,560 + AO353_01975 0.41 -1.5
418,570 + AO353_01975 0.42 -1.0
418,570 + AO353_01975 0.42 -0.8
418,571 - AO353_01975 0.42 +0.8
418,571 - AO353_01975 0.42 -0.5
418,571 - AO353_01975 0.42 -0.2
418,640 + AO353_01975 0.49 -1.0
418,689 + AO353_01975 0.53 -0.8
418,689 + AO353_01975 0.53 -0.5
418,689 + AO353_01975 0.53 -1.4
418,690 - AO353_01975 0.54 -0.5
418,690 - AO353_01975 0.54 -2.9
418,723 + AO353_01975 0.57 -1.5
418,739 + AO353_01975 0.58 -0.5
418,739 + AO353_01975 0.58 -0.2
418,740 - AO353_01975 0.58 -0.5
418,741 + AO353_01975 0.59 -0.4
418,741 + AO353_01975 0.59 +0.5
418,742 - AO353_01975 0.59 +0.8
418,798 - AO353_01975 0.64 +1.1
418,845 + AO353_01975 0.69 -1.2
418,845 + AO353_01975 0.69 -0.8
418,846 - AO353_01975 0.69 -2.6
418,846 - AO353_01975 0.69 +0.2
418,876 + AO353_01975 0.72 -1.2
418,877 - AO353_01975 0.72 -1.2
419,005 + AO353_01975 0.84 -1.2
419,006 - AO353_01975 0.85 +0.2
419,042 - AO353_01975 0.88 -1.0
419,052 + AO353_01975 0.89 -1.9
419,053 - AO353_01975 0.89 -1.5

Or see this region's nucleotide sequence