Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01645 and AO353_01650 are separated by 159 nucleotides AO353_01650 and AO353_01655 are separated by 131 nucleotides
AO353_01645: AO353_01645 - hypothetical protein, at 345,123 to 345,881
_01645
AO353_01650: AO353_01650 - chemotaxis protein, at 346,041 to 348,008
_01650
AO353_01655: AO353_01655 - GntR family transcriptional regulator, at 348,140 to 349,546
_01655
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 345.051 kb on + strand at 345.052 kb on - strand at 345.052 kb on - strand at 345.068 kb on - strand at 345.068 kb on - strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.074 kb on + strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.075 kb on - strand at 345.093 kb on + strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.094 kb on - strand at 345.095 kb on + strand at 345.096 kb on - strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.136 kb on + strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.137 kb on - strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.139 kb on + strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.140 kb on - strand at 345.142 kb on + strand at 345.142 kb on + strand at 345.143 kb on - strand at 345.143 kb on - strand at 345.157 kb on + strand at 345.157 kb on + strand at 345.158 kb on - strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.174 kb on + strand at 345.175 kb on - strand at 345.200 kb on + strand, within AO353_01645 at 345.200 kb on + strand, within AO353_01645 at 345.201 kb on - strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.481 kb on + strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.482 kb on - strand, within AO353_01645 at 345.592 kb on + strand, within AO353_01645 at 345.593 kb on - strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.690 kb on + strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.691 kb on - strand, within AO353_01645 at 345.720 kb on + strand, within AO353_01645 at 345.721 kb on - strand, within AO353_01645 at 345.738 kb on + strand, within AO353_01645 at 345.739 kb on - strand, within AO353_01645 at 345.809 kb on + strand at 345.869 kb on + strand at 345.870 kb on - strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.873 kb on + strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.874 kb on - strand at 345.883 kb on - strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.949 kb on + strand at 345.950 kb on - strand at 345.950 kb on - strand at 345.969 kb on + strand at 345.969 kb on + strand at 345.977 kb on + strand at 345.977 kb on + strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 345.978 kb on - strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.262 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.332 kb on + strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.333 kb on - strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.637 kb on + strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650 at 346.638 kb on - strand, within AO353_01650 at 347.036 kb on + strand, within AO353_01650 at 347.037 kb on - strand, within AO353_01650 at 347.146 kb on + strand, within AO353_01650 at 347.147 kb on - strand, within AO353_01650 at 347.147 kb on - strand, within AO353_01650 at 347.200 kb on + strand, within AO353_01650 at 347.201 kb on - strand, within AO353_01650 at 347.201 kb on - strand, within AO353_01650 at 347.233 kb on + strand, within AO353_01650 at 347.234 kb on - strand, within AO353_01650 at 347.265 kb on - strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.524 kb on + strand, within AO353_01650 at 347.525 kb on - strand, within AO353_01650 at 347.525 kb on - strand, within AO353_01650 at 347.567 kb on + strand, within AO353_01650 at 347.568 kb on - strand, within AO353_01650 at 347.660 kb on - strand, within AO353_01650 at 347.702 kb on + strand, within AO353_01650 at 347.789 kb on + strand, within AO353_01650 at 347.789 kb on + strand, within AO353_01650 at 347.790 kb on - strand, within AO353_01650 at 347.800 kb on + strand, within AO353_01650 at 347.942 kb on + strand at 347.943 kb on - strand at 348.029 kb on + strand at 348.210 kb on + strand at 348.210 kb on + strand at 348.211 kb on - strand at 348.211 kb on - strand at 348.211 kb on - strand at 348.223 kb on + strand at 348.239 kb on - strand at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.348 kb on + strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.349 kb on - strand, within AO353_01655 at 348.419 kb on - strand, within AO353_01655 at 348.449 kb on + strand, within AO353_01655 at 348.450 kb on - strand, within AO353_01655 at 348.450 kb on - strand, within AO353_01655 at 348.579 kb on + strand, within AO353_01655 at 348.579 kb on + strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.580 kb on - strand, within AO353_01655 at 348.627 kb on + strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.628 kb on - strand, within AO353_01655 at 348.693 kb on + strand, within AO353_01655 at 348.693 kb on + strand, within AO353_01655 at 348.693 kb on + strand, within AO353_01655 at 348.694 kb on - strand, within AO353_01655 at 348.694 kb on - strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.716 kb on + strand, within AO353_01655 at 348.881 kb on + strand, within AO353_01655 at 348.881 kb on + strand, within AO353_01655 at 348.882 kb on - strand, within AO353_01655 at 348.882 kb on - strand, within AO353_01655 at 348.882 kb on - strand, within AO353_01655 at 348.983 kb on + strand, within AO353_01655 at 349.006 kb on + strand, within AO353_01655 at 349.006 kb on + strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655 at 349.007 kb on - strand, within AO353_01655
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 345,051 + +0.7 345,052 - +0.8 345,052 - +0.2 345,068 - -0.1 345,068 - +2.8 345,074 + +0.9 345,074 + -2.0 345,074 + +1.5 345,075 - -0.2 345,075 - -0.8 345,075 - -1.3 345,093 + +0.0 345,094 - -1.1 345,094 - +0.1 345,094 - +0.2 345,094 - -1.2 345,095 + -0.2 345,096 - -0.1 345,136 + -0.4 345,136 + -0.1 345,136 + +0.2 345,136 + -0.3 345,136 + -0.1 345,136 + +0.6 345,136 + -0.4 345,136 + -0.1 345,136 + -0.2 345,137 - +0.2 345,137 - -0.5 345,137 - +0.8 345,137 - -0.5 345,137 - +0.0 345,137 - +0.1 345,139 + +0.8 345,139 + +1.0 345,139 + +0.3 345,139 + +0.3 345,139 + +0.5 345,139 + +0.5 345,139 + +0.0 345,139 + -1.5 345,140 - -0.8 345,140 - -0.8 345,140 - +1.4 345,140 - +0.5 345,142 + +0.2 345,142 + +0.2 345,143 - -0.1 345,143 - -0.8 345,157 + -1.2 345,157 + -0.5 345,158 - +0.2 345,174 + -1.8 345,174 + +0.1 345,174 + +1.0 345,175 - -1.5 345,200 + AO353_01645 0.10 +0.0 345,200 + AO353_01645 0.10 +0.4 345,201 - AO353_01645 0.10 +0.6 345,481 + AO353_01645 0.47 +0.6 345,481 + AO353_01645 0.47 +1.0 345,481 + AO353_01645 0.47 +0.4 345,481 + AO353_01645 0.47 -1.0 345,482 - AO353_01645 0.47 -0.9 345,482 - AO353_01645 0.47 +0.3 345,482 - AO353_01645 0.47 -0.7 345,482 - AO353_01645 0.47 +0.1 345,482 - AO353_01645 0.47 +0.1 345,482 - AO353_01645 0.47 -0.0 345,592 + AO353_01645 0.62 -0.5 345,593 - AO353_01645 0.62 +1.1 345,690 + AO353_01645 0.75 +0.1 345,690 + AO353_01645 0.75 -0.1 345,691 - AO353_01645 0.75 -0.1 345,691 - AO353_01645 0.75 +0.9 345,691 - AO353_01645 0.75 -0.2 345,691 - AO353_01645 0.75 -0.4 345,691 - AO353_01645 0.75 -1.7 345,691 - AO353_01645 0.75 +0.5 345,720 + AO353_01645 0.79 -0.9 345,721 - AO353_01645 0.79 +1.4 345,738 + AO353_01645 0.81 -0.7 345,739 - AO353_01645 0.81 -1.1 345,809 + +0.8 345,869 + -1.0 345,870 - +0.6 345,873 + +1.4 345,873 + -1.5 345,873 + +2.2 345,873 + -1.5 345,873 + +0.6 345,874 - +1.2 345,874 - -0.9 345,874 - +0.0 345,883 - +0.1 345,949 + +0.6 345,949 + -0.5 345,949 + +0.6 345,949 + -0.5 345,949 + +1.0 345,950 - +1.2 345,950 - -2.4 345,969 + +1.0 345,969 + -0.6 345,977 + +1.1 345,977 + +0.4 345,978 - -0.9 345,978 - +0.9 345,978 - -0.5 345,978 - +0.8 346,042 + -0.4 346,042 + -1.6 346,042 + -0.7 346,042 + -0.4 346,043 - -0.8 346,043 - +2.8 346,043 - +2.2 346,043 - -0.5 346,043 - -0.1 346,043 - -0.5 346,043 - +1.1 346,043 - +1.1 346,043 - +1.2 346,043 - +0.9 346,262 + AO353_01650 0.11 -0.9 346,332 + AO353_01650 0.15 +1.0 346,332 + AO353_01650 0.15 +3.8 346,332 + AO353_01650 0.15 -1.5 346,333 - AO353_01650 0.15 +0.2 346,333 - AO353_01650 0.15 +0.8 346,333 - AO353_01650 0.15 -0.4 346,637 + AO353_01650 0.30 -0.5 346,637 + AO353_01650 0.30 -1.4 346,638 - AO353_01650 0.30 +0.6 346,638 - AO353_01650 0.30 -0.8 347,036 + AO353_01650 0.51 -0.1 347,037 - AO353_01650 0.51 +3.5 347,146 + AO353_01650 0.56 -1.1 347,147 - AO353_01650 0.56 +0.2 347,147 - AO353_01650 0.56 +0.0 347,200 + AO353_01650 0.59 -1.2 347,201 - AO353_01650 0.59 +0.8 347,201 - AO353_01650 0.59 +0.2 347,233 + AO353_01650 0.61 -1.1 347,234 - AO353_01650 0.61 +0.8 347,265 - AO353_01650 0.62 -0.8 347,524 + AO353_01650 0.75 -0.7 347,524 + AO353_01650 0.75 +1.8 347,524 + AO353_01650 0.75 +0.3 347,524 + AO353_01650 0.75 +0.1 347,525 - AO353_01650 0.75 -1.4 347,525 - AO353_01650 0.75 -1.4 347,567 + AO353_01650 0.78 -0.0 347,568 - AO353_01650 0.78 -1.8 347,660 - AO353_01650 0.82 -0.2 347,702 + AO353_01650 0.84 +0.0 347,789 + AO353_01650 0.89 +0.9 347,789 + AO353_01650 0.89 -0.0 347,790 - AO353_01650 0.89 +1.5 347,800 + AO353_01650 0.89 +0.2 347,942 + +0.5 347,943 - +0.5 348,029 + +0.9 348,210 + -0.5 348,210 + -1.4 348,211 - +0.5 348,211 - +1.8 348,211 - -1.5 348,223 + -2.2 348,239 - -0.5 348,348 + AO353_01655 0.15 -2.1 348,348 + AO353_01655 0.15 -1.5 348,348 + AO353_01655 0.15 -1.9 348,348 + AO353_01655 0.15 +0.1 348,348 + AO353_01655 0.15 -0.8 348,348 + AO353_01655 0.15 +1.0 348,348 + AO353_01655 0.15 -1.4 348,349 - AO353_01655 0.15 +0.5 348,349 - AO353_01655 0.15 +1.5 348,349 - AO353_01655 0.15 -1.0 348,349 - AO353_01655 0.15 +0.6 348,349 - AO353_01655 0.15 +2.2 348,419 - AO353_01655 0.20 +0.4 348,449 + AO353_01655 0.22 +0.0 348,450 - AO353_01655 0.22 -0.2 348,450 - AO353_01655 0.22 +1.1 348,579 + AO353_01655 0.31 -1.4 348,579 + AO353_01655 0.31 -0.3 348,580 - AO353_01655 0.31 +0.5 348,580 - AO353_01655 0.31 +0.5 348,580 - AO353_01655 0.31 +0.6 348,580 - AO353_01655 0.31 -0.4 348,627 + AO353_01655 0.35 -0.8 348,628 - AO353_01655 0.35 -0.4 348,628 - AO353_01655 0.35 -0.1 348,628 - AO353_01655 0.35 -0.0 348,628 - AO353_01655 0.35 -1.4 348,628 - AO353_01655 0.35 -0.8 348,628 - AO353_01655 0.35 +1.1 348,628 - AO353_01655 0.35 +2.2 348,693 + AO353_01655 0.39 -1.3 348,693 + AO353_01655 0.39 -0.7 348,693 + AO353_01655 0.39 -1.2 348,694 - AO353_01655 0.39 -0.0 348,694 - AO353_01655 0.39 -0.7 348,716 + AO353_01655 0.41 -1.0 348,716 + AO353_01655 0.41 -1.2 348,716 + AO353_01655 0.41 +0.0 348,716 + AO353_01655 0.41 -0.5 348,881 + AO353_01655 0.53 +0.8 348,881 + AO353_01655 0.53 -1.5 348,882 - AO353_01655 0.53 -0.8 348,882 - AO353_01655 0.53 +0.6 348,882 - AO353_01655 0.53 -0.7 348,983 + AO353_01655 0.60 -0.0 349,006 + AO353_01655 0.62 +1.6 349,006 + AO353_01655 0.62 +0.0 349,007 - AO353_01655 0.62 +0.3 349,007 - AO353_01655 0.62 +0.2 349,007 - AO353_01655 0.62 +0.4 349,007 - AO353_01655 0.62 -0.1
Or see this region's nucleotide sequence