Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01345

Experiment: nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_01335 and AO353_01340 overlap by 8 nucleotidesAO353_01340 and AO353_01345 are separated by 19 nucleotidesAO353_01345 and AO353_01350 are separated by 3 nucleotidesAO353_01350 and AO353_01355 overlap by 1 nucleotides AO353_01335: AO353_01335 - DNA polymerase III subunit delta', at 288,595 to 289,581 _01335 AO353_01340: AO353_01340 - thymidylate kinase, at 289,574 to 290,206 _01340 AO353_01345: AO353_01345 - aminodeoxychorismate lyase, at 290,226 to 291,416 _01345 AO353_01350: AO353_01350 - 4-amino-4-deoxychorismate lyase, at 291,420 to 292,235 _01350 AO353_01355: AO353_01355 - 3-oxoacyl-ACP synthase, at 292,235 to 293,479 _01355 Position (kb) 290 291 292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 290.504 kb on - strand, within AO353_01345at 290.504 kb on - strand, within AO353_01345at 290.504 kb on - strand, within AO353_01345at 290.504 kb on - strand, within AO353_01345at 290.506 kb on - strand, within AO353_01345at 290.506 kb on - strand, within AO353_01345at 290.506 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.595 kb on - strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.596 kb on + strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.597 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.601 kb on - strand, within AO353_01345at 290.606 kb on - strand, within AO353_01345at 290.606 kb on - strand, within AO353_01345at 290.651 kb on - strand, within AO353_01345at 290.651 kb on - strand, within AO353_01345at 290.651 kb on - strand, within AO353_01345at 290.669 kb on - strand, within AO353_01345at 290.669 kb on - strand, within AO353_01345at 290.669 kb on - strand, within AO353_01345at 290.669 kb on - strand, within AO353_01345at 290.669 kb on - strand, within AO353_01345at 290.669 kb on - strand, within AO353_01345at 290.669 kb on - strand, within AO353_01345at 290.801 kb on - strand, within AO353_01345at 290.801 kb on - strand, within AO353_01345at 290.811 kb on - strand, within AO353_01345at 290.813 kb on - strand, within AO353_01345at 290.813 kb on - strand, within AO353_01345at 290.813 kb on - strand, within AO353_01345at 290.873 kb on - strand, within AO353_01345at 290.921 kb on - strand, within AO353_01345at 290.921 kb on - strand, within AO353_01345at 290.921 kb on - strand, within AO353_01345at 290.921 kb on - strand, within AO353_01345at 291.086 kb on - strand, within AO353_01345at 291.155 kb on - strand, within AO353_01345at 291.283 kb on - strand, within AO353_01345at 291.283 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.306 kb on - strandat 291.364 kb on - strandat 291.408 kb on - strandat 291.408 kb on - strandat 291.408 kb on - strandat 291.408 kb on - strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.520 kb on + strand, within AO353_01350at 291.520 kb on + strand, within AO353_01350at 291.704 kb on + strand, within AO353_01350at 291.704 kb on + strand, within AO353_01350at 291.875 kb on + strand, within AO353_01350at 291.875 kb on + strand, within AO353_01350at 291.875 kb on + strand, within AO353_01350at 291.876 kb on - strand, within AO353_01350at 291.876 kb on - strand, within AO353_01350at 291.921 kb on + strand, within AO353_01350at 291.921 kb on + strand, within AO353_01350at 291.922 kb on - strand, within AO353_01350at 291.922 kb on - strand, within AO353_01350at 291.922 kb on - strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.930 kb on - strand, within AO353_01350at 292.027 kb on + strand, within AO353_01350at 292.027 kb on + strand, within AO353_01350at 292.027 kb on + strand, within AO353_01350at 292.028 kb on - strand, within AO353_01350at 292.028 kb on - strand, within AO353_01350at 292.319 kb on - strandat 292.319 kb on - strandat 292.319 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
remove
290,504 - AO353_01345 0.23 -0.3
290,504 - AO353_01345 0.23 -4.1
290,504 - AO353_01345 0.23 -0.4
290,504 - AO353_01345 0.23 -0.1
290,506 - AO353_01345 0.24 -2.2
290,506 - AO353_01345 0.24 +0.0
290,506 - AO353_01345 0.24 -0.3
290,595 - AO353_01345 0.31 -1.6
290,595 - AO353_01345 0.31 -1.3
290,595 - AO353_01345 0.31 -1.2
290,595 - AO353_01345 0.31 -1.6
290,595 - AO353_01345 0.31 -0.4
290,595 - AO353_01345 0.31 -2.3
290,595 - AO353_01345 0.31 -1.7
290,595 - AO353_01345 0.31 -3.3
290,595 - AO353_01345 0.31 -2.2
290,595 - AO353_01345 0.31 +0.4
290,596 + AO353_01345 0.31 -1.4
290,596 + AO353_01345 0.31 -0.8
290,596 + AO353_01345 0.31 -2.8
290,596 + AO353_01345 0.31 -2.9
290,596 + AO353_01345 0.31 -1.3
290,596 + AO353_01345 0.31 -0.6
290,596 + AO353_01345 0.31 -1.4
290,596 + AO353_01345 0.31 +0.6
290,596 + AO353_01345 0.31 -2.0
290,596 + AO353_01345 0.31 -0.8
290,596 + AO353_01345 0.31 -2.4
290,596 + AO353_01345 0.31 -2.6
290,596 + AO353_01345 0.31 -0.3
290,596 + AO353_01345 0.31 -1.3
290,596 + AO353_01345 0.31 -2.0
290,596 + AO353_01345 0.31 -1.1
290,596 + AO353_01345 0.31 -1.3
290,596 + AO353_01345 0.31 -2.0
290,596 + AO353_01345 0.31 -1.3
290,596 + AO353_01345 0.31 -0.7
290,596 + AO353_01345 0.31 -1.1
290,597 - AO353_01345 0.31 -2.3
290,597 - AO353_01345 0.31 -2.1
290,597 - AO353_01345 0.31 +1.0
290,597 - AO353_01345 0.31 -2.4
290,597 - AO353_01345 0.31 -2.0
290,597 - AO353_01345 0.31 +0.5
290,597 - AO353_01345 0.31 -1.3
290,597 - AO353_01345 0.31 -2.2
290,597 - AO353_01345 0.31 -2.0
290,597 - AO353_01345 0.31 +0.7
290,597 - AO353_01345 0.31 -1.6
290,597 - AO353_01345 0.31 -0.4
290,597 - AO353_01345 0.31 +0.1
290,597 - AO353_01345 0.31 -1.5
290,597 - AO353_01345 0.31 -0.1
290,601 - AO353_01345 0.31 -1.7
290,601 - AO353_01345 0.31 -2.7
290,601 - AO353_01345 0.31 -2.0
290,601 - AO353_01345 0.31 +1.0
290,601 - AO353_01345 0.31 -1.4
290,601 - AO353_01345 0.31 -2.6
290,601 - AO353_01345 0.31 -1.3
290,601 - AO353_01345 0.31 -0.3
290,601 - AO353_01345 0.31 -1.4
290,601 - AO353_01345 0.31 -0.8
290,601 - AO353_01345 0.31 -1.3
290,601 - AO353_01345 0.31 -2.3
290,601 - AO353_01345 0.31 -0.8
290,601 - AO353_01345 0.31 -1.4
290,606 - AO353_01345 0.32 -1.0
290,606 - AO353_01345 0.32 -0.8
290,651 - AO353_01345 0.36 -2.2
290,651 - AO353_01345 0.36 -3.0
290,651 - AO353_01345 0.36 -1.5
290,669 - AO353_01345 0.37 -2.6
290,669 - AO353_01345 0.37 -0.2
290,669 - AO353_01345 0.37 -1.1
290,669 - AO353_01345 0.37 -1.3
290,669 - AO353_01345 0.37 +0.5
290,669 - AO353_01345 0.37 -2.2
290,669 - AO353_01345 0.37 -2.3
290,801 - AO353_01345 0.48 -0.3
290,801 - AO353_01345 0.48 +0.9
290,811 - AO353_01345 0.49 +0.0
290,813 - AO353_01345 0.49 -1.0
290,813 - AO353_01345 0.49 -2.3
290,813 - AO353_01345 0.49 -3.1
290,873 - AO353_01345 0.54 +0.1
290,921 - AO353_01345 0.58 -2.2
290,921 - AO353_01345 0.58 -2.3
290,921 - AO353_01345 0.58 -0.6
290,921 - AO353_01345 0.58 -0.1
291,086 - AO353_01345 0.72 -1.1
291,155 - AO353_01345 0.78 -2.3
291,283 - AO353_01345 0.89 -2.6
291,283 - AO353_01345 0.89 -1.6
291,292 - AO353_01345 0.90 -1.1
291,292 - AO353_01345 0.90 -1.6
291,292 - AO353_01345 0.90 -0.9
291,292 - AO353_01345 0.90 -1.2
291,306 - -2.5
291,364 - -1.1
291,408 - -1.3
291,408 - +1.7
291,408 - -0.4
291,408 - -1.6
291,496 + +0.7
291,496 + -0.1
291,496 + +0.2
291,496 + -1.1
291,496 + -1.3
291,497 - -1.6
291,497 - -0.8
291,497 - -0.1
291,497 - -0.3
291,497 - -1.8
291,497 - +0.4
291,497 - -2.6
291,520 + AO353_01350 0.12 +3.2
291,520 + AO353_01350 0.12 -0.6
291,704 + AO353_01350 0.35 -0.4
291,704 + AO353_01350 0.35 +2.0
291,875 + AO353_01350 0.56 +1.0
291,875 + AO353_01350 0.56 -0.3
291,875 + AO353_01350 0.56 -1.9
291,876 - AO353_01350 0.56 -1.1
291,876 - AO353_01350 0.56 -0.0
291,921 + AO353_01350 0.61 -0.1
291,921 + AO353_01350 0.61 +0.5
291,922 - AO353_01350 0.62 -1.1
291,922 - AO353_01350 0.62 -0.6
291,922 - AO353_01350 0.62 -1.3
291,929 + AO353_01350 0.62 -0.1
291,929 + AO353_01350 0.62 -0.5
291,929 + AO353_01350 0.62 -0.2
291,929 + AO353_01350 0.62 +0.2
291,929 + AO353_01350 0.62 +1.2
291,930 - AO353_01350 0.62 +0.2
292,027 + AO353_01350 0.74 +1.7
292,027 + AO353_01350 0.74 -0.3
292,027 + AO353_01350 0.74 +0.2
292,028 - AO353_01350 0.75 -2.1
292,028 - AO353_01350 0.75 -1.7
292,319 - +0.2
292,319 - -0.4
292,319 - +0.7

Or see this region's nucleotide sequence