Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00685 and AO353_00690 are separated by 146 nucleotides AO353_00690 and AO353_00695 are separated by 3 nucleotides AO353_00695 and AO353_00700 are separated by 490 nucleotides AO353_00700 and AO353_00705 are separated by 136 nucleotides
AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433
_00685
AO353_00690: AO353_00690 - amino acid ABC transporter substrate-binding protein, at 146,580 to 147,338
_00690
AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042
_00695
AO353_00700: AO353_00700 - Cro/Cl family transcriptional regulator, at 149,533 to 149,847
_00700
AO353_00705: AO353_00705 - drug:proton antiporter, at 149,984 to 150,352
_00705
Position (kb) 147
148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 146.512 kb on + strand at 146.521 kb on + strand at 146.529 kb on + strand at 146.530 kb on - strand at 146.579 kb on + strand at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.836 kb on - strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.984 kb on - strand, within AO353_00690 at 147.092 kb on + strand, within AO353_00690 at 147.100 kb on - strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.212 kb on + strand, within AO353_00690 at 147.301 kb on - strand at 147.301 kb on - strand at 147.337 kb on - strand at 147.337 kb on - strand at 147.439 kb on + strand at 147.439 kb on + strand at 147.440 kb on - strand at 147.451 kb on - strand at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.585 kb on + strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.586 kb on - strand, within AO353_00695 at 147.605 kb on + strand, within AO353_00695 at 147.606 kb on - strand, within AO353_00695 at 147.644 kb on - strand, within AO353_00695 at 147.737 kb on + strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 147.738 kb on - strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.216 kb on + strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.217 kb on - strand, within AO353_00695 at 148.328 kb on - strand, within AO353_00695 at 148.382 kb on + strand, within AO353_00695 at 148.390 kb on - strand, within AO353_00695 at 148.390 kb on - strand, within AO353_00695 at 148.390 kb on - strand, within AO353_00695 at 148.514 kb on - strand, within AO353_00695 at 148.588 kb on + strand, within AO353_00695 at 148.621 kb on + strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.622 kb on - strand, within AO353_00695 at 148.723 kb on + strand, within AO353_00695 at 148.934 kb on - strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.966 kb on + strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.967 kb on - strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.970 kb on + strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 148.971 kb on - strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.016 kb on + strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.017 kb on - strand at 149.029 kb on + strand at 149.030 kb on - strand at 149.071 kb on + strand at 149.171 kb on + strand at 149.171 kb on + strand at 149.171 kb on + strand at 149.172 kb on - strand at 149.254 kb on + strand at 149.254 kb on + strand at 149.254 kb on + strand at 149.255 kb on - strand at 149.255 kb on - strand at 149.271 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.390 kb on + strand at 149.391 kb on - strand at 149.416 kb on + strand at 149.416 kb on + strand at 149.432 kb on + strand at 149.433 kb on - strand at 149.440 kb on - strand at 149.440 kb on - strand at 149.589 kb on + strand, within AO353_00700 at 149.589 kb on + strand, within AO353_00700 at 149.590 kb on - strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.659 kb on + strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.660 kb on - strand, within AO353_00700 at 149.761 kb on + strand, within AO353_00700 at 149.762 kb on - strand, within AO353_00700 at 149.762 kb on - strand, within AO353_00700 at 149.777 kb on + strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.877 kb on + strand at 149.877 kb on + strand at 149.877 kb on + strand at 149.888 kb on + strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.946 kb on - strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 146,512 + +0.0 146,521 + +0.3 146,529 + +0.8 146,530 - -1.3 146,579 + -0.4 146,721 + AO353_00690 0.19 +0.5 146,721 + AO353_00690 0.19 -0.0 146,721 + AO353_00690 0.19 -0.2 146,836 - AO353_00690 0.34 -0.1 146,874 + AO353_00690 0.39 +1.0 146,874 + AO353_00690 0.39 +0.2 146,874 + AO353_00690 0.39 -0.2 146,875 - AO353_00690 0.39 +0.2 146,875 - AO353_00690 0.39 +2.6 146,984 - AO353_00690 0.53 -0.3 147,092 + AO353_00690 0.67 -0.5 147,100 - AO353_00690 0.69 -1.2 147,204 + AO353_00690 0.82 -0.5 147,204 + AO353_00690 0.82 -0.1 147,204 + AO353_00690 0.82 -0.3 147,204 + AO353_00690 0.82 +0.2 147,205 - AO353_00690 0.82 -0.6 147,205 - AO353_00690 0.82 -0.6 147,212 + AO353_00690 0.83 -0.6 147,301 - -0.3 147,301 - +1.9 147,337 - +1.1 147,337 - +2.1 147,439 + +1.9 147,439 + +3.2 147,440 - +3.3 147,451 - +2.4 147,585 + AO353_00695 0.14 +3.5 147,585 + AO353_00695 0.14 +2.3 147,585 + AO353_00695 0.14 +2.1 147,585 + AO353_00695 0.14 +3.5 147,585 + AO353_00695 0.14 +3.0 147,585 + AO353_00695 0.14 +2.7 147,585 + AO353_00695 0.14 +2.6 147,585 + AO353_00695 0.14 +2.9 147,586 - AO353_00695 0.14 +1.3 147,586 - AO353_00695 0.14 +2.0 147,586 - AO353_00695 0.14 +2.6 147,586 - AO353_00695 0.14 +2.6 147,605 + AO353_00695 0.15 +3.6 147,606 - AO353_00695 0.16 +4.0 147,644 - AO353_00695 0.18 +2.9 147,737 + AO353_00695 0.23 +1.5 147,738 - AO353_00695 0.23 +2.4 147,738 - AO353_00695 0.23 +1.8 147,738 - AO353_00695 0.23 +3.1 147,738 - AO353_00695 0.23 +0.7 148,216 + AO353_00695 0.51 +1.7 148,216 + AO353_00695 0.51 +2.2 148,216 + AO353_00695 0.51 +2.8 148,216 + AO353_00695 0.51 +2.4 148,216 + AO353_00695 0.51 +1.8 148,216 + AO353_00695 0.51 +1.5 148,216 + AO353_00695 0.51 +1.3 148,216 + AO353_00695 0.51 +2.9 148,216 + AO353_00695 0.51 +2.5 148,216 + AO353_00695 0.51 +2.6 148,216 + AO353_00695 0.51 +1.8 148,217 - AO353_00695 0.51 +2.2 148,217 - AO353_00695 0.51 +3.3 148,217 - AO353_00695 0.51 +2.4 148,217 - AO353_00695 0.51 +2.3 148,217 - AO353_00695 0.51 +0.1 148,217 - AO353_00695 0.51 +2.0 148,217 - AO353_00695 0.51 -1.1 148,328 - AO353_00695 0.58 +2.9 148,382 + AO353_00695 0.61 +3.2 148,390 - AO353_00695 0.62 +3.0 148,390 - AO353_00695 0.62 +3.5 148,390 - AO353_00695 0.62 +2.5 148,514 - AO353_00695 0.69 +2.9 148,588 + AO353_00695 0.73 +2.5 148,621 + AO353_00695 0.75 +2.1 148,622 - AO353_00695 0.75 +0.7 148,622 - AO353_00695 0.75 +2.8 148,622 - AO353_00695 0.75 +4.0 148,622 - AO353_00695 0.75 +1.9 148,622 - AO353_00695 0.75 +3.5 148,723 + AO353_00695 0.81 +1.9 148,934 - +4.2 148,966 + +2.5 148,966 + +2.9 148,966 + +2.7 148,966 + +1.7 148,966 + +3.5 148,966 + +2.1 148,966 + +0.6 148,966 + +2.6 148,966 + +2.5 148,966 + +2.7 148,967 - +2.5 148,967 - +3.3 148,967 - +2.9 148,967 - +2.6 148,970 + +2.1 148,970 + +3.0 148,970 + +2.7 148,970 + +2.1 148,970 + +3.1 148,970 + +3.2 148,971 - +1.1 148,971 - +2.2 148,971 - +2.3 148,971 - +3.0 148,971 - +2.1 148,971 - +2.7 149,016 + +2.4 149,016 + +2.6 149,016 + +2.2 149,017 - +0.3 149,017 - +2.0 149,017 - +2.5 149,029 + +4.4 149,030 - +2.5 149,071 + +3.0 149,171 + +2.5 149,171 + +2.6 149,171 + +3.0 149,172 - +0.3 149,254 + +2.2 149,254 + +2.5 149,254 + +2.5 149,255 - -1.0 149,255 - -0.4 149,271 + +2.6 149,390 + +2.3 149,390 + +2.1 149,390 + +3.4 149,390 + +2.3 149,390 + +2.7 149,390 + +2.0 149,391 - +1.0 149,416 + +3.7 149,416 + +2.3 149,432 + +1.9 149,433 - +0.2 149,440 - +0.2 149,440 - -0.6 149,589 + AO353_00700 0.18 +1.3 149,589 + AO353_00700 0.18 +1.8 149,590 - AO353_00700 0.18 +0.5 149,659 + AO353_00700 0.40 -1.9 149,659 + AO353_00700 0.40 +0.1 149,659 + AO353_00700 0.40 -1.0 149,659 + AO353_00700 0.40 +0.3 149,659 + AO353_00700 0.40 +0.1 149,659 + AO353_00700 0.40 -2.0 149,659 + AO353_00700 0.40 -1.0 149,659 + AO353_00700 0.40 +0.3 149,659 + AO353_00700 0.40 -0.4 149,659 + AO353_00700 0.40 +2.0 149,659 + AO353_00700 0.40 -0.1 149,659 + AO353_00700 0.40 -0.8 149,660 - AO353_00700 0.40 -2.0 149,660 - AO353_00700 0.40 -0.8 149,660 - AO353_00700 0.40 -2.4 149,660 - AO353_00700 0.40 +0.9 149,660 - AO353_00700 0.40 -1.1 149,660 - AO353_00700 0.40 -2.1 149,660 - AO353_00700 0.40 +1.7 149,660 - AO353_00700 0.40 -0.3 149,660 - AO353_00700 0.40 -0.9 149,660 - AO353_00700 0.40 -0.9 149,660 - AO353_00700 0.40 -2.6 149,660 - AO353_00700 0.40 +0.3 149,660 - AO353_00700 0.40 -0.6 149,660 - AO353_00700 0.40 +0.4 149,660 - AO353_00700 0.40 -0.9 149,660 - AO353_00700 0.40 -2.7 149,660 - AO353_00700 0.40 -0.3 149,660 - AO353_00700 0.40 -1.8 149,761 + AO353_00700 0.72 -0.6 149,762 - AO353_00700 0.73 -0.3 149,762 - AO353_00700 0.73 +0.1 149,777 + AO353_00700 0.77 +1.1 149,778 - AO353_00700 0.78 +0.6 149,778 - AO353_00700 0.78 -1.0 149,778 - AO353_00700 0.78 -2.4 149,877 + -0.6 149,877 + -1.4 149,877 + -0.9 149,888 + -0.3 149,889 - -0.5 149,889 - -1.2 149,889 - -0.0 149,889 - -0.9 149,889 - -1.7 149,916 + +0.1 149,916 + -1.5 149,916 + -0.3 149,946 - +0.2 149,999 + -0.5 149,999 + -1.4 149,999 + -1.6 149,999 + -0.1 149,999 + +0.1 149,999 + -0.4 150,000 - -0.2 150,000 - -0.6 150,000 - -0.1 150,000 - -1.5 150,011 + -0.5 150,011 + -1.0 150,012 - -0.3
Or see this region's nucleotide sequence