Experiment: Chlorite 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20765 and ABZR86_RS20770 overlap by 4 nucleotides ABZR86_RS20770 and ABZR86_RS20775 are separated by 83 nucleotides ABZR86_RS20775 and ABZR86_RS20780 are separated by 88 nucleotides
ABZR86_RS20765: ABZR86_RS20765 - efflux RND transporter permease subunit, at 113,526 to 116,651
_RS20765
ABZR86_RS20770: ABZR86_RS20770 - efflux RND transporter periplasmic adaptor subunit, at 116,648 to 117,763
_RS20770
ABZR86_RS20775: ABZR86_RS20775 - TetR/AcrR family transcriptional regulator, at 117,847 to 118,464
_RS20775
ABZR86_RS20780: ABZR86_RS20780 - TolC family protein, at 118,553 to 120,016
_RS20780
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 115.844 kb on - strand, within ABZR86_RS20765 at 115.956 kb on + strand, within ABZR86_RS20765 at 115.956 kb on + strand, within ABZR86_RS20765 at 115.957 kb on - strand, within ABZR86_RS20765 at 116.080 kb on + strand, within ABZR86_RS20765 at 116.081 kb on - strand, within ABZR86_RS20765 at 116.081 kb on - strand, within ABZR86_RS20765 at 116.222 kb on + strand, within ABZR86_RS20765 at 116.233 kb on + strand, within ABZR86_RS20765 at 116.311 kb on + strand, within ABZR86_RS20765 at 116.312 kb on - strand, within ABZR86_RS20765 at 116.312 kb on - strand, within ABZR86_RS20765 at 116.390 kb on - strand at 116.390 kb on - strand at 116.516 kb on + strand at 116.517 kb on - strand at 116.991 kb on + strand, within ABZR86_RS20770 at 116.991 kb on + strand, within ABZR86_RS20770 at 116.991 kb on + strand, within ABZR86_RS20770 at 116.992 kb on - strand, within ABZR86_RS20770 at 116.992 kb on - strand, within ABZR86_RS20770 at 117.348 kb on + strand, within ABZR86_RS20770 at 117.348 kb on + strand, within ABZR86_RS20770 at 117.349 kb on - strand, within ABZR86_RS20770 at 117.722 kb on + strand at 117.763 kb on + strand at 117.763 kb on + strand at 117.763 kb on + strand at 117.763 kb on + strand at 117.763 kb on + strand at 117.763 kb on + strand at 117.763 kb on + strand at 117.764 kb on - strand at 117.764 kb on - strand at 117.764 kb on - strand at 117.905 kb on + strand at 117.905 kb on + strand at 117.906 kb on - strand at 118.064 kb on + strand, within ABZR86_RS20775 at 118.065 kb on - strand, within ABZR86_RS20775 at 118.298 kb on + strand, within ABZR86_RS20775 at 118.298 kb on + strand, within ABZR86_RS20775 at 118.298 kb on + strand, within ABZR86_RS20775 at 118.299 kb on - strand, within ABZR86_RS20775 at 118.305 kb on - strand, within ABZR86_RS20775 at 118.305 kb on - strand, within ABZR86_RS20775 at 118.305 kb on - strand, within ABZR86_RS20775 at 118.358 kb on + strand, within ABZR86_RS20775 at 118.464 kb on + strand at 118.464 kb on + strand at 118.465 kb on - strand at 118.477 kb on + strand at 118.477 kb on + strand at 118.478 kb on - strand at 118.478 kb on - strand at 118.572 kb on + strand at 118.572 kb on + strand at 118.572 kb on + strand at 118.572 kb on + strand at 118.572 kb on + strand at 118.573 kb on - strand at 118.573 kb on - strand at 118.573 kb on - strand at 118.573 kb on - strand at 118.573 kb on - strand at 118.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.32 mM remove 115,844 - ABZR86_RS20765 0.74 -0.3 115,956 + ABZR86_RS20765 0.78 -0.5 115,956 + ABZR86_RS20765 0.78 -0.1 115,957 - ABZR86_RS20765 0.78 -0.4 116,080 + ABZR86_RS20765 0.82 +0.9 116,081 - ABZR86_RS20765 0.82 -0.1 116,081 - ABZR86_RS20765 0.82 -0.0 116,222 + ABZR86_RS20765 0.86 +0.2 116,233 + ABZR86_RS20765 0.87 +0.9 116,311 + ABZR86_RS20765 0.89 -0.2 116,312 - ABZR86_RS20765 0.89 -0.1 116,312 - ABZR86_RS20765 0.89 +0.1 116,390 - +0.0 116,390 - +0.2 116,516 + -0.2 116,517 - -0.2 116,991 + ABZR86_RS20770 0.31 -0.4 116,991 + ABZR86_RS20770 0.31 +1.1 116,991 + ABZR86_RS20770 0.31 -0.5 116,992 - ABZR86_RS20770 0.31 -0.1 116,992 - ABZR86_RS20770 0.31 +0.6 117,348 + ABZR86_RS20770 0.63 -0.5 117,348 + ABZR86_RS20770 0.63 +0.9 117,349 - ABZR86_RS20770 0.63 +1.0 117,722 + -1.4 117,763 + +0.1 117,763 + +0.1 117,763 + +1.3 117,763 + +0.8 117,763 + +1.2 117,763 + -0.1 117,763 + +0.2 117,764 - -0.8 117,764 - +0.1 117,764 - +0.0 117,905 + -0.7 117,905 + -0.4 117,906 - -2.0 118,064 + ABZR86_RS20775 0.35 -0.6 118,065 - ABZR86_RS20775 0.35 -1.5 118,298 + ABZR86_RS20775 0.73 -1.9 118,298 + ABZR86_RS20775 0.73 -3.5 118,298 + ABZR86_RS20775 0.73 -0.9 118,299 - ABZR86_RS20775 0.73 -1.6 118,305 - ABZR86_RS20775 0.74 -3.5 118,305 - ABZR86_RS20775 0.74 -0.7 118,305 - ABZR86_RS20775 0.74 -2.1 118,358 + ABZR86_RS20775 0.83 -4.0 118,464 + -0.5 118,464 + -0.5 118,465 - +0.1 118,477 + +0.1 118,477 + -0.2 118,478 - +0.1 118,478 - +0.8 118,572 + -1.7 118,572 + -0.4 118,572 + -0.0 118,572 + -0.3 118,572 + -0.3 118,573 - +0.2 118,573 - +0.1 118,573 - +1.1 118,573 - +0.1 118,573 - +0.3 118,573 - -0.2
Or see this region's nucleotide sequence