Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20770

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20765 and ABZR86_RS20770 overlap by 4 nucleotidesABZR86_RS20770 and ABZR86_RS20775 are separated by 83 nucleotidesABZR86_RS20775 and ABZR86_RS20780 are separated by 88 nucleotides ABZR86_RS20765: ABZR86_RS20765 - efflux RND transporter permease subunit, at 113,526 to 116,651 _RS20765 ABZR86_RS20770: ABZR86_RS20770 - efflux RND transporter periplasmic adaptor subunit, at 116,648 to 117,763 _RS20770 ABZR86_RS20775: ABZR86_RS20775 - TetR/AcrR family transcriptional regulator, at 117,847 to 118,464 _RS20775 ABZR86_RS20780: ABZR86_RS20780 - TolC family protein, at 118,553 to 120,016 _RS20780 Position (kb) 116 117 118Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 115.844 kb on - strand, within ABZR86_RS20765at 115.956 kb on + strand, within ABZR86_RS20765at 115.956 kb on + strand, within ABZR86_RS20765at 115.957 kb on - strand, within ABZR86_RS20765at 116.080 kb on + strand, within ABZR86_RS20765at 116.081 kb on - strand, within ABZR86_RS20765at 116.081 kb on - strand, within ABZR86_RS20765at 116.222 kb on + strand, within ABZR86_RS20765at 116.233 kb on + strand, within ABZR86_RS20765at 116.311 kb on + strand, within ABZR86_RS20765at 116.312 kb on - strand, within ABZR86_RS20765at 116.312 kb on - strand, within ABZR86_RS20765at 116.390 kb on - strandat 116.390 kb on - strandat 116.516 kb on + strandat 116.517 kb on - strandat 116.991 kb on + strand, within ABZR86_RS20770at 116.991 kb on + strand, within ABZR86_RS20770at 116.991 kb on + strand, within ABZR86_RS20770at 116.992 kb on - strand, within ABZR86_RS20770at 116.992 kb on - strand, within ABZR86_RS20770at 117.348 kb on + strand, within ABZR86_RS20770at 117.348 kb on + strand, within ABZR86_RS20770at 117.349 kb on - strand, within ABZR86_RS20770at 117.722 kb on + strandat 117.763 kb on + strandat 117.763 kb on + strandat 117.763 kb on + strandat 117.763 kb on + strandat 117.763 kb on + strandat 117.763 kb on + strandat 117.763 kb on + strandat 117.764 kb on - strandat 117.764 kb on - strandat 117.764 kb on - strandat 117.905 kb on + strandat 117.905 kb on + strandat 117.906 kb on - strandat 118.064 kb on + strand, within ABZR86_RS20775at 118.065 kb on - strand, within ABZR86_RS20775at 118.298 kb on + strand, within ABZR86_RS20775at 118.298 kb on + strand, within ABZR86_RS20775at 118.298 kb on + strand, within ABZR86_RS20775at 118.299 kb on - strand, within ABZR86_RS20775at 118.305 kb on - strand, within ABZR86_RS20775at 118.305 kb on - strand, within ABZR86_RS20775at 118.305 kb on - strand, within ABZR86_RS20775at 118.358 kb on + strand, within ABZR86_RS20775at 118.464 kb on + strandat 118.464 kb on + strandat 118.465 kb on - strandat 118.477 kb on + strandat 118.477 kb on + strandat 118.478 kb on - strandat 118.478 kb on - strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.573 kb on - strandat 118.573 kb on - strandat 118.573 kb on - strandat 118.573 kb on - strandat 118.573 kb on - strandat 118.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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115,844 - ABZR86_RS20765 0.74 -0.3
115,956 + ABZR86_RS20765 0.78 -0.5
115,956 + ABZR86_RS20765 0.78 -0.1
115,957 - ABZR86_RS20765 0.78 -0.4
116,080 + ABZR86_RS20765 0.82 +0.9
116,081 - ABZR86_RS20765 0.82 -0.1
116,081 - ABZR86_RS20765 0.82 -0.0
116,222 + ABZR86_RS20765 0.86 +0.2
116,233 + ABZR86_RS20765 0.87 +0.9
116,311 + ABZR86_RS20765 0.89 -0.2
116,312 - ABZR86_RS20765 0.89 -0.1
116,312 - ABZR86_RS20765 0.89 +0.1
116,390 - +0.0
116,390 - +0.2
116,516 + -0.2
116,517 - -0.2
116,991 + ABZR86_RS20770 0.31 -0.4
116,991 + ABZR86_RS20770 0.31 +1.1
116,991 + ABZR86_RS20770 0.31 -0.5
116,992 - ABZR86_RS20770 0.31 -0.1
116,992 - ABZR86_RS20770 0.31 +0.6
117,348 + ABZR86_RS20770 0.63 -0.5
117,348 + ABZR86_RS20770 0.63 +0.9
117,349 - ABZR86_RS20770 0.63 +1.0
117,722 + -1.4
117,763 + +0.1
117,763 + +0.1
117,763 + +1.3
117,763 + +0.8
117,763 + +1.2
117,763 + -0.1
117,763 + +0.2
117,764 - -0.8
117,764 - +0.1
117,764 - +0.0
117,905 + -0.7
117,905 + -0.4
117,906 - -2.0
118,064 + ABZR86_RS20775 0.35 -0.6
118,065 - ABZR86_RS20775 0.35 -1.5
118,298 + ABZR86_RS20775 0.73 -1.9
118,298 + ABZR86_RS20775 0.73 -3.5
118,298 + ABZR86_RS20775 0.73 -0.9
118,299 - ABZR86_RS20775 0.73 -1.6
118,305 - ABZR86_RS20775 0.74 -3.5
118,305 - ABZR86_RS20775 0.74 -0.7
118,305 - ABZR86_RS20775 0.74 -2.1
118,358 + ABZR86_RS20775 0.83 -4.0
118,464 + -0.5
118,464 + -0.5
118,465 - +0.1
118,477 + +0.1
118,477 + -0.2
118,478 - +0.1
118,478 - +0.8
118,572 + -1.7
118,572 + -0.4
118,572 + -0.0
118,572 + -0.3
118,572 + -0.3
118,573 - +0.2
118,573 - +0.1
118,573 - +1.1
118,573 - +0.1
118,573 - +0.3
118,573 - -0.2

Or see this region's nucleotide sequence