Experiment: Chlorite 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18270 and ABZR86_RS18275 are separated by 27 nucleotides ABZR86_RS18275 and ABZR86_RS18280 are separated by 141 nucleotides ABZR86_RS18280 and ABZR86_RS18285 are separated by 14 nucleotides
ABZR86_RS18270: ABZR86_RS18270 - hypothetical protein, at 71,240 to 71,935
_RS18270
ABZR86_RS18275: ABZR86_RS18275 - TetR/AcrR family transcriptional regulator, at 71,963 to 72,577
_RS18275
ABZR86_RS18280: ABZR86_RS18280 - efflux RND transporter periplasmic adaptor subunit, at 72,719 to 73,909
_RS18280
ABZR86_RS18285: ABZR86_RS18285 - efflux RND transporter permease subunit, at 73,924 to 77,067
_RS18285
Position (kb) 72
73
74 Strain fitness (log2 ratio) -1
0
1
2 at 71.802 kb on + strand, within ABZR86_RS18270 at 71.832 kb on - strand, within ABZR86_RS18270 at 71.832 kb on - strand, within ABZR86_RS18270 at 71.897 kb on + strand at 71.985 kb on + strand at 72.033 kb on + strand, within ABZR86_RS18275 at 72.213 kb on + strand, within ABZR86_RS18275 at 72.213 kb on + strand, within ABZR86_RS18275 at 72.214 kb on - strand, within ABZR86_RS18275 at 72.214 kb on - strand, within ABZR86_RS18275 at 72.444 kb on + strand, within ABZR86_RS18275 at 72.444 kb on + strand, within ABZR86_RS18275 at 72.445 kb on - strand, within ABZR86_RS18275 at 72.612 kb on - strand at 72.615 kb on + strand at 72.615 kb on + strand at 72.616 kb on - strand at 72.668 kb on + strand at 72.686 kb on - strand at 72.902 kb on + strand, within ABZR86_RS18280 at 72.902 kb on + strand, within ABZR86_RS18280 at 72.902 kb on + strand, within ABZR86_RS18280 at 72.902 kb on + strand, within ABZR86_RS18280 at 72.903 kb on - strand, within ABZR86_RS18280 at 72.903 kb on - strand, within ABZR86_RS18280 at 72.996 kb on - strand, within ABZR86_RS18280 at 73.016 kb on + strand, within ABZR86_RS18280 at 73.016 kb on + strand, within ABZR86_RS18280 at 73.016 kb on + strand, within ABZR86_RS18280 at 73.016 kb on + strand, within ABZR86_RS18280 at 73.016 kb on + strand, within ABZR86_RS18280 at 73.017 kb on - strand, within ABZR86_RS18280 at 73.028 kb on + strand, within ABZR86_RS18280 at 73.029 kb on - strand, within ABZR86_RS18280 at 73.101 kb on - strand, within ABZR86_RS18280 at 73.352 kb on + strand, within ABZR86_RS18280 at 73.352 kb on + strand, within ABZR86_RS18280 at 73.352 kb on + strand, within ABZR86_RS18280 at 73.353 kb on - strand, within ABZR86_RS18280 at 73.478 kb on + strand, within ABZR86_RS18280 at 73.592 kb on + strand, within ABZR86_RS18280 at 73.592 kb on + strand, within ABZR86_RS18280 at 73.592 kb on + strand, within ABZR86_RS18280 at 73.592 kb on + strand, within ABZR86_RS18280 at 73.593 kb on - strand, within ABZR86_RS18280 at 73.593 kb on - strand, within ABZR86_RS18280 at 73.593 kb on - strand, within ABZR86_RS18280 at 73.593 kb on - strand, within ABZR86_RS18280 at 73.907 kb on + strand at 73.907 kb on + strand at 73.908 kb on - strand at 73.908 kb on - strand at 74.152 kb on + strand at 74.152 kb on + strand at 74.152 kb on + strand at 74.152 kb on + strand at 74.153 kb on - strand at 74.467 kb on + strand, within ABZR86_RS18285 at 74.531 kb on + strand, within ABZR86_RS18285 at 74.532 kb on - strand, within ABZR86_RS18285 at 74.532 kb on - strand, within ABZR86_RS18285 at 74.532 kb on - strand, within ABZR86_RS18285 at 74.532 kb on - strand, within ABZR86_RS18285 at 74.532 kb on - strand, within ABZR86_RS18285 at 74.532 kb on - strand, within ABZR86_RS18285 at 74.532 kb on - strand, within ABZR86_RS18285 at 74.827 kb on - strand, within ABZR86_RS18285
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.32 mM remove 71,802 + ABZR86_RS18270 0.81 +1.0 71,832 - ABZR86_RS18270 0.85 -0.5 71,832 - ABZR86_RS18270 0.85 +0.3 71,897 + +0.2 71,985 + +0.3 72,033 + ABZR86_RS18275 0.11 -1.0 72,213 + ABZR86_RS18275 0.41 -0.7 72,213 + ABZR86_RS18275 0.41 -1.5 72,214 - ABZR86_RS18275 0.41 -0.5 72,214 - ABZR86_RS18275 0.41 +0.3 72,444 + ABZR86_RS18275 0.78 -0.6 72,444 + ABZR86_RS18275 0.78 -0.4 72,445 - ABZR86_RS18275 0.78 -0.7 72,612 - +0.2 72,615 + -0.6 72,615 + -1.6 72,616 - +1.0 72,668 + -0.6 72,686 - +0.4 72,902 + ABZR86_RS18280 0.15 -0.2 72,902 + ABZR86_RS18280 0.15 +0.3 72,902 + ABZR86_RS18280 0.15 -0.5 72,902 + ABZR86_RS18280 0.15 -0.8 72,903 - ABZR86_RS18280 0.15 +0.1 72,903 - ABZR86_RS18280 0.15 -0.2 72,996 - ABZR86_RS18280 0.23 +0.1 73,016 + ABZR86_RS18280 0.25 -1.2 73,016 + ABZR86_RS18280 0.25 -0.4 73,016 + ABZR86_RS18280 0.25 -0.0 73,016 + ABZR86_RS18280 0.25 -0.3 73,016 + ABZR86_RS18280 0.25 -0.3 73,017 - ABZR86_RS18280 0.25 +1.1 73,028 + ABZR86_RS18280 0.26 -0.3 73,029 - ABZR86_RS18280 0.26 -0.1 73,101 - ABZR86_RS18280 0.32 +0.0 73,352 + ABZR86_RS18280 0.53 +0.8 73,352 + ABZR86_RS18280 0.53 +0.5 73,352 + ABZR86_RS18280 0.53 -0.2 73,353 - ABZR86_RS18280 0.53 +0.1 73,478 + ABZR86_RS18280 0.64 +0.6 73,592 + ABZR86_RS18280 0.73 -0.0 73,592 + ABZR86_RS18280 0.73 -0.4 73,592 + ABZR86_RS18280 0.73 -1.3 73,592 + ABZR86_RS18280 0.73 +0.5 73,593 - ABZR86_RS18280 0.73 -0.9 73,593 - ABZR86_RS18280 0.73 -0.5 73,593 - ABZR86_RS18280 0.73 -0.3 73,593 - ABZR86_RS18280 0.73 +0.2 73,907 + +0.1 73,907 + +0.4 73,908 - -0.7 73,908 - +0.1 74,152 + -0.1 74,152 + -0.0 74,152 + -0.3 74,152 + +1.8 74,153 - +0.0 74,467 + ABZR86_RS18285 0.17 -0.2 74,531 + ABZR86_RS18285 0.19 -0.3 74,532 - ABZR86_RS18285 0.19 +0.3 74,532 - ABZR86_RS18285 0.19 +0.3 74,532 - ABZR86_RS18285 0.19 -1.5 74,532 - ABZR86_RS18285 0.19 +0.1 74,532 - ABZR86_RS18285 0.19 +1.7 74,532 - ABZR86_RS18285 0.19 -0.8 74,532 - ABZR86_RS18285 0.19 -0.3 74,827 - ABZR86_RS18285 0.29 +0.2
Or see this region's nucleotide sequence