Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15715

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15705 and ABZR86_RS15710 are separated by 9 nucleotidesABZR86_RS15710 and ABZR86_RS15715 are separated by 3 nucleotidesABZR86_RS15715 and ABZR86_RS15720 are separated by 16 nucleotides ABZR86_RS15705: ABZR86_RS15705 - rhomboid family intramembrane serine protease, at 3,533,845 to 3,534,528 _RS15705 ABZR86_RS15710: ABZR86_RS15710 - DUF1820 family protein, at 3,534,538 to 3,534,864 _RS15710 ABZR86_RS15715: ABZR86_RS15715 - glutamine amidotransferase, at 3,534,868 to 3,535,593 _RS15715 ABZR86_RS15720: ABZR86_RS15720 - GspE/PulE family protein, at 3,535,610 to 3,537,430 _RS15720 Position (kb) 3534 3535 3536Strain fitness (log2 ratio) -1 0 1at 3534.000 kb on + strand, within ABZR86_RS15705at 3534.000 kb on + strand, within ABZR86_RS15705at 3534.001 kb on - strand, within ABZR86_RS15705at 3534.108 kb on + strand, within ABZR86_RS15705at 3534.108 kb on + strand, within ABZR86_RS15705at 3534.108 kb on + strand, within ABZR86_RS15705at 3534.108 kb on + strand, within ABZR86_RS15705at 3534.108 kb on + strand, within ABZR86_RS15705at 3534.108 kb on + strand, within ABZR86_RS15705at 3534.109 kb on - strand, within ABZR86_RS15705at 3534.109 kb on - strand, within ABZR86_RS15705at 3534.109 kb on - strand, within ABZR86_RS15705at 3534.109 kb on - strand, within ABZR86_RS15705at 3534.109 kb on - strand, within ABZR86_RS15705at 3534.286 kb on + strand, within ABZR86_RS15705at 3534.286 kb on + strand, within ABZR86_RS15705at 3534.287 kb on - strand, within ABZR86_RS15705at 3534.287 kb on - strand, within ABZR86_RS15705at 3534.287 kb on - strand, within ABZR86_RS15705at 3534.289 kb on - strand, within ABZR86_RS15705at 3534.340 kb on + strand, within ABZR86_RS15705at 3534.340 kb on + strand, within ABZR86_RS15705at 3534.412 kb on + strand, within ABZR86_RS15705at 3534.412 kb on + strand, within ABZR86_RS15705at 3534.412 kb on + strand, within ABZR86_RS15705at 3534.413 kb on - strand, within ABZR86_RS15705at 3534.413 kb on - strand, within ABZR86_RS15705at 3534.427 kb on + strand, within ABZR86_RS15705at 3534.427 kb on + strand, within ABZR86_RS15705at 3534.428 kb on - strand, within ABZR86_RS15705at 3534.428 kb on - strand, within ABZR86_RS15705at 3534.428 kb on - strand, within ABZR86_RS15705at 3534.440 kb on + strand, within ABZR86_RS15705at 3534.440 kb on + strand, within ABZR86_RS15705at 3534.441 kb on - strand, within ABZR86_RS15705at 3534.441 kb on - strand, within ABZR86_RS15705at 3534.441 kb on - strand, within ABZR86_RS15705at 3534.481 kb on + strandat 3534.482 kb on - strandat 3534.482 kb on - strandat 3534.482 kb on - strandat 3534.531 kb on + strandat 3534.531 kb on + strandat 3534.531 kb on + strandat 3534.531 kb on + strandat 3534.531 kb on + strandat 3534.532 kb on - strandat 3534.532 kb on - strandat 3534.532 kb on - strandat 3534.532 kb on - strandat 3534.532 kb on - strandat 3534.556 kb on + strandat 3534.589 kb on + strand, within ABZR86_RS15710at 3534.589 kb on + strand, within ABZR86_RS15710at 3534.589 kb on + strand, within ABZR86_RS15710at 3534.589 kb on + strand, within ABZR86_RS15710at 3534.589 kb on + strand, within ABZR86_RS15710at 3534.589 kb on + strand, within ABZR86_RS15710at 3534.590 kb on - strand, within ABZR86_RS15710at 3534.590 kb on - strand, within ABZR86_RS15710at 3534.590 kb on - strand, within ABZR86_RS15710at 3534.590 kb on - strand, within ABZR86_RS15710at 3534.598 kb on + strand, within ABZR86_RS15710at 3534.876 kb on - strandat 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.954 kb on + strand, within ABZR86_RS15715at 3534.955 kb on - strand, within ABZR86_RS15715at 3534.955 kb on - strand, within ABZR86_RS15715at 3534.955 kb on - strand, within ABZR86_RS15715at 3534.955 kb on - strand, within ABZR86_RS15715at 3534.955 kb on - strand, within ABZR86_RS15715at 3534.955 kb on - strand, within ABZR86_RS15715at 3534.955 kb on - strand, within ABZR86_RS15715at 3534.984 kb on + strand, within ABZR86_RS15715at 3534.985 kb on - strand, within ABZR86_RS15715at 3535.007 kb on + strand, within ABZR86_RS15715at 3535.007 kb on + strand, within ABZR86_RS15715at 3535.007 kb on + strand, within ABZR86_RS15715at 3535.007 kb on + strand, within ABZR86_RS15715at 3535.008 kb on - strand, within ABZR86_RS15715at 3535.008 kb on - strand, within ABZR86_RS15715at 3535.008 kb on - strand, within ABZR86_RS15715at 3535.008 kb on - strand, within ABZR86_RS15715at 3535.070 kb on + strand, within ABZR86_RS15715at 3535.158 kb on + strand, within ABZR86_RS15715at 3535.158 kb on + strand, within ABZR86_RS15715at 3535.158 kb on + strand, within ABZR86_RS15715at 3535.158 kb on + strand, within ABZR86_RS15715at 3535.159 kb on - strand, within ABZR86_RS15715at 3535.262 kb on + strand, within ABZR86_RS15715at 3535.262 kb on + strand, within ABZR86_RS15715at 3535.262 kb on + strand, within ABZR86_RS15715at 3535.263 kb on - strand, within ABZR86_RS15715at 3535.263 kb on - strand, within ABZR86_RS15715at 3535.263 kb on - strand, within ABZR86_RS15715at 3535.263 kb on - strand, within ABZR86_RS15715at 3535.307 kb on + strand, within ABZR86_RS15715at 3535.429 kb on + strand, within ABZR86_RS15715at 3535.429 kb on + strand, within ABZR86_RS15715at 3535.429 kb on + strand, within ABZR86_RS15715at 3535.430 kb on - strand, within ABZR86_RS15715at 3535.815 kb on + strand, within ABZR86_RS15720at 3535.815 kb on + strand, within ABZR86_RS15720at 3536.022 kb on + strand, within ABZR86_RS15720at 3536.331 kb on + strand, within ABZR86_RS15720at 3536.331 kb on + strand, within ABZR86_RS15720at 3536.332 kb on - strand, within ABZR86_RS15720at 3536.332 kb on - strand, within ABZR86_RS15720at 3536.332 kb on - strand, within ABZR86_RS15720at 3536.332 kb on - strand, within ABZR86_RS15720at 3536.479 kb on + strand, within ABZR86_RS15720at 3536.479 kb on + strand, within ABZR86_RS15720at 3536.479 kb on + strand, within ABZR86_RS15720at 3536.479 kb on + strand, within ABZR86_RS15720at 3536.480 kb on - strand, within ABZR86_RS15720at 3536.480 kb on - strand, within ABZR86_RS15720at 3536.480 kb on - strand, within ABZR86_RS15720at 3536.524 kb on + strand, within ABZR86_RS15720at 3536.525 kb on - strand, within ABZR86_RS15720at 3536.525 kb on - strand, within ABZR86_RS15720

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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3,534,000 + ABZR86_RS15705 0.23 -0.1
3,534,000 + ABZR86_RS15705 0.23 +0.3
3,534,001 - ABZR86_RS15705 0.23 +0.4
3,534,108 + ABZR86_RS15705 0.38 -1.1
3,534,108 + ABZR86_RS15705 0.38 -0.0
3,534,108 + ABZR86_RS15705 0.38 +0.7
3,534,108 + ABZR86_RS15705 0.38 -0.2
3,534,108 + ABZR86_RS15705 0.38 +0.0
3,534,108 + ABZR86_RS15705 0.38 -0.8
3,534,109 - ABZR86_RS15705 0.39 +0.2
3,534,109 - ABZR86_RS15705 0.39 +1.1
3,534,109 - ABZR86_RS15705 0.39 +0.3
3,534,109 - ABZR86_RS15705 0.39 -0.5
3,534,109 - ABZR86_RS15705 0.39 +0.1
3,534,286 + ABZR86_RS15705 0.64 -0.4
3,534,286 + ABZR86_RS15705 0.64 +0.5
3,534,287 - ABZR86_RS15705 0.65 +0.5
3,534,287 - ABZR86_RS15705 0.65 +0.1
3,534,287 - ABZR86_RS15705 0.65 +0.0
3,534,289 - ABZR86_RS15705 0.65 +0.3
3,534,340 + ABZR86_RS15705 0.72 +0.1
3,534,340 + ABZR86_RS15705 0.72 +0.6
3,534,412 + ABZR86_RS15705 0.83 -0.0
3,534,412 + ABZR86_RS15705 0.83 -0.5
3,534,412 + ABZR86_RS15705 0.83 -0.6
3,534,413 - ABZR86_RS15705 0.83 +0.1
3,534,413 - ABZR86_RS15705 0.83 +0.4
3,534,427 + ABZR86_RS15705 0.85 +0.2
3,534,427 + ABZR86_RS15705 0.85 -0.9
3,534,428 - ABZR86_RS15705 0.85 -0.2
3,534,428 - ABZR86_RS15705 0.85 +0.2
3,534,428 - ABZR86_RS15705 0.85 +0.2
3,534,440 + ABZR86_RS15705 0.87 -0.4
3,534,440 + ABZR86_RS15705 0.87 -0.6
3,534,441 - ABZR86_RS15705 0.87 +0.4
3,534,441 - ABZR86_RS15705 0.87 -0.4
3,534,441 - ABZR86_RS15705 0.87 -0.3
3,534,481 + -1.1
3,534,482 - +1.0
3,534,482 - -0.2
3,534,482 - -0.2
3,534,531 + -0.1
3,534,531 + -0.7
3,534,531 + +0.5
3,534,531 + +0.1
3,534,531 + -0.6
3,534,532 - -0.5
3,534,532 - -0.1
3,534,532 - +0.3
3,534,532 - +1.3
3,534,532 - -0.6
3,534,556 + -0.5
3,534,589 + ABZR86_RS15710 0.16 +0.1
3,534,589 + ABZR86_RS15710 0.16 -0.4
3,534,589 + ABZR86_RS15710 0.16 -0.4
3,534,589 + ABZR86_RS15710 0.16 -0.4
3,534,589 + ABZR86_RS15710 0.16 -0.5
3,534,589 + ABZR86_RS15710 0.16 -0.5
3,534,590 - ABZR86_RS15710 0.16 -1.6
3,534,590 - ABZR86_RS15710 0.16 +0.3
3,534,590 - ABZR86_RS15710 0.16 -0.4
3,534,590 - ABZR86_RS15710 0.16 -0.2
3,534,598 + ABZR86_RS15710 0.18 -0.1
3,534,876 - -0.9
3,534,954 + ABZR86_RS15715 0.12 -0.6
3,534,954 + ABZR86_RS15715 0.12 +0.0
3,534,954 + ABZR86_RS15715 0.12 -0.5
3,534,954 + ABZR86_RS15715 0.12 -0.2
3,534,954 + ABZR86_RS15715 0.12 +0.5
3,534,954 + ABZR86_RS15715 0.12 -0.2
3,534,954 + ABZR86_RS15715 0.12 -0.5
3,534,954 + ABZR86_RS15715 0.12 -0.3
3,534,954 + ABZR86_RS15715 0.12 -0.0
3,534,954 + ABZR86_RS15715 0.12 -0.7
3,534,954 + ABZR86_RS15715 0.12 +0.3
3,534,954 + ABZR86_RS15715 0.12 -0.4
3,534,955 - ABZR86_RS15715 0.12 +0.1
3,534,955 - ABZR86_RS15715 0.12 +0.2
3,534,955 - ABZR86_RS15715 0.12 +0.3
3,534,955 - ABZR86_RS15715 0.12 -1.7
3,534,955 - ABZR86_RS15715 0.12 -0.1
3,534,955 - ABZR86_RS15715 0.12 +0.2
3,534,955 - ABZR86_RS15715 0.12 +0.2
3,534,984 + ABZR86_RS15715 0.16 +1.5
3,534,985 - ABZR86_RS15715 0.16 +0.4
3,535,007 + ABZR86_RS15715 0.19 +0.3
3,535,007 + ABZR86_RS15715 0.19 +0.1
3,535,007 + ABZR86_RS15715 0.19 -0.0
3,535,007 + ABZR86_RS15715 0.19 -0.4
3,535,008 - ABZR86_RS15715 0.19 -0.0
3,535,008 - ABZR86_RS15715 0.19 -0.6
3,535,008 - ABZR86_RS15715 0.19 +0.2
3,535,008 - ABZR86_RS15715 0.19 +0.1
3,535,070 + ABZR86_RS15715 0.28 -0.4
3,535,158 + ABZR86_RS15715 0.40 +0.4
3,535,158 + ABZR86_RS15715 0.40 -0.2
3,535,158 + ABZR86_RS15715 0.40 +1.0
3,535,158 + ABZR86_RS15715 0.40 -0.3
3,535,159 - ABZR86_RS15715 0.40 +0.3
3,535,262 + ABZR86_RS15715 0.54 -0.6
3,535,262 + ABZR86_RS15715 0.54 -0.4
3,535,262 + ABZR86_RS15715 0.54 -0.1
3,535,263 - ABZR86_RS15715 0.54 -0.7
3,535,263 - ABZR86_RS15715 0.54 +0.2
3,535,263 - ABZR86_RS15715 0.54 -0.1
3,535,263 - ABZR86_RS15715 0.54 +0.5
3,535,307 + ABZR86_RS15715 0.60 -0.4
3,535,429 + ABZR86_RS15715 0.77 +0.4
3,535,429 + ABZR86_RS15715 0.77 +0.2
3,535,429 + ABZR86_RS15715 0.77 -0.5
3,535,430 - ABZR86_RS15715 0.77 -0.1
3,535,815 + ABZR86_RS15720 0.11 +0.4
3,535,815 + ABZR86_RS15720 0.11 +0.4
3,536,022 + ABZR86_RS15720 0.23 -0.1
3,536,331 + ABZR86_RS15720 0.40 -0.1
3,536,331 + ABZR86_RS15720 0.40 -0.2
3,536,332 - ABZR86_RS15720 0.40 -0.2
3,536,332 - ABZR86_RS15720 0.40 +0.6
3,536,332 - ABZR86_RS15720 0.40 -0.1
3,536,332 - ABZR86_RS15720 0.40 -0.1
3,536,479 + ABZR86_RS15720 0.48 +1.6
3,536,479 + ABZR86_RS15720 0.48 +1.2
3,536,479 + ABZR86_RS15720 0.48 +0.6
3,536,479 + ABZR86_RS15720 0.48 +1.0
3,536,480 - ABZR86_RS15720 0.48 +0.5
3,536,480 - ABZR86_RS15720 0.48 +0.1
3,536,480 - ABZR86_RS15720 0.48 +0.1
3,536,524 + ABZR86_RS15720 0.50 +0.3
3,536,525 - ABZR86_RS15720 0.50 +0.6
3,536,525 - ABZR86_RS15720 0.50 +0.3

Or see this region's nucleotide sequence