Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13520

Experiment: Chlorite 0.32 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS13515 and ABZR86_RS13520 are separated by 157 nucleotidesABZR86_RS13520 and ABZR86_RS13525 are separated by 44 nucleotides ABZR86_RS13515: ABZR86_RS13515 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 3,027,919 to 3,028,662 _RS13515 ABZR86_RS13520: ABZR86_RS13520 - hypothetical protein, at 3,028,820 to 3,029,479 _RS13520 ABZR86_RS13525: ABZR86_RS13525 - oxygen-dependent coproporphyrinogen oxidase, at 3,029,524 to 3,030,426 _RS13525 Position (kb) 3028 3029 3030Strain fitness (log2 ratio) -1 0 1 2at 3027.840 kb on + strandat 3027.840 kb on + strandat 3027.841 kb on - strandat 3027.920 kb on + strandat 3027.920 kb on + strandat 3027.920 kb on + strandat 3027.921 kb on - strandat 3027.921 kb on - strandat 3027.921 kb on - strandat 3027.921 kb on - strandat 3027.921 kb on - strandat 3027.986 kb on + strandat 3027.986 kb on + strandat 3027.986 kb on + strandat 3027.987 kb on - strandat 3027.987 kb on - strandat 3027.987 kb on - strandat 3027.989 kb on + strandat 3027.989 kb on + strandat 3027.989 kb on + strandat 3027.989 kb on + strandat 3027.989 kb on + strandat 3027.990 kb on - strandat 3027.990 kb on - strandat 3027.990 kb on - strandat 3027.990 kb on - strandat 3028.026 kb on - strand, within ABZR86_RS13515at 3028.092 kb on - strand, within ABZR86_RS13515at 3028.092 kb on - strand, within ABZR86_RS13515at 3028.313 kb on + strand, within ABZR86_RS13515at 3028.314 kb on - strand, within ABZR86_RS13515at 3028.314 kb on - strand, within ABZR86_RS13515at 3028.395 kb on - strand, within ABZR86_RS13515at 3028.500 kb on + strand, within ABZR86_RS13515at 3028.500 kb on + strand, within ABZR86_RS13515at 3028.500 kb on + strand, within ABZR86_RS13515at 3028.500 kb on + strand, within ABZR86_RS13515at 3028.500 kb on + strand, within ABZR86_RS13515at 3028.500 kb on + strand, within ABZR86_RS13515at 3028.501 kb on - strand, within ABZR86_RS13515at 3028.648 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.762 kb on + strandat 3028.763 kb on - strandat 3028.763 kb on - strandat 3028.763 kb on - strandat 3028.763 kb on - strandat 3028.763 kb on - strandat 3028.763 kb on - strandat 3028.763 kb on - strandat 3028.763 kb on - strandat 3028.789 kb on + strandat 3028.789 kb on + strandat 3028.789 kb on + strandat 3028.789 kb on + strandat 3028.789 kb on + strandat 3028.789 kb on + strandat 3028.790 kb on - strandat 3028.790 kb on - strandat 3028.790 kb on - strandat 3028.790 kb on - strandat 3028.790 kb on - strandat 3028.828 kb on + strandat 3028.828 kb on + strandat 3029.123 kb on - strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.246 kb on + strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3029.247 kb on - strand, within ABZR86_RS13520at 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
remove
3,027,840 + -0.4
3,027,840 + -0.0
3,027,841 - +0.4
3,027,920 + +0.4
3,027,920 + -1.1
3,027,920 + +0.5
3,027,921 - +0.1
3,027,921 - +0.4
3,027,921 - +0.6
3,027,921 - -0.1
3,027,921 - -0.0
3,027,986 + +0.7
3,027,986 + +0.2
3,027,986 + +0.5
3,027,987 - +0.6
3,027,987 - +0.5
3,027,987 - +2.4
3,027,989 + +1.3
3,027,989 + +0.5
3,027,989 + +1.0
3,027,989 + +0.8
3,027,989 + +0.8
3,027,990 - +1.1
3,027,990 - +0.3
3,027,990 - +0.6
3,027,990 - +1.1
3,028,026 - ABZR86_RS13515 0.14 +0.9
3,028,092 - ABZR86_RS13515 0.23 +1.3
3,028,092 - ABZR86_RS13515 0.23 +1.3
3,028,313 + ABZR86_RS13515 0.53 +2.0
3,028,314 - ABZR86_RS13515 0.53 +0.8
3,028,314 - ABZR86_RS13515 0.53 +2.0
3,028,395 - ABZR86_RS13515 0.64 +0.9
3,028,500 + ABZR86_RS13515 0.78 +1.3
3,028,500 + ABZR86_RS13515 0.78 +0.8
3,028,500 + ABZR86_RS13515 0.78 +0.7
3,028,500 + ABZR86_RS13515 0.78 +1.1
3,028,500 + ABZR86_RS13515 0.78 +0.3
3,028,500 + ABZR86_RS13515 0.78 +1.1
3,028,501 - ABZR86_RS13515 0.78 +1.5
3,028,648 + +1.3
3,028,762 + +0.4
3,028,762 + -0.3
3,028,762 + -0.3
3,028,762 + -0.4
3,028,762 + -0.1
3,028,762 + -0.2
3,028,762 + -0.5
3,028,762 + -0.4
3,028,762 + -0.8
3,028,763 - +0.4
3,028,763 - -0.0
3,028,763 - -0.7
3,028,763 - -0.2
3,028,763 - -0.6
3,028,763 - -0.0
3,028,763 - +0.7
3,028,763 - +0.2
3,028,789 + -0.1
3,028,789 + +0.1
3,028,789 + -0.4
3,028,789 + -0.1
3,028,789 + -1.7
3,028,789 + +0.5
3,028,790 - +0.5
3,028,790 - -0.8
3,028,790 - +0.4
3,028,790 - +0.2
3,028,790 - -0.2
3,028,828 + +0.4
3,028,828 + -0.2
3,029,123 - ABZR86_RS13520 0.46 -1.4
3,029,246 + ABZR86_RS13520 0.65 +0.1
3,029,246 + ABZR86_RS13520 0.65 +1.2
3,029,246 + ABZR86_RS13520 0.65 +1.0
3,029,246 + ABZR86_RS13520 0.65 +0.3
3,029,246 + ABZR86_RS13520 0.65 +0.3
3,029,246 + ABZR86_RS13520 0.65 -0.2
3,029,246 + ABZR86_RS13520 0.65 -0.2
3,029,246 + ABZR86_RS13520 0.65 -0.6
3,029,246 + ABZR86_RS13520 0.65 +0.5
3,029,246 + ABZR86_RS13520 0.65 -0.4
3,029,246 + ABZR86_RS13520 0.65 -0.1
3,029,246 + ABZR86_RS13520 0.65 +0.2
3,029,246 + ABZR86_RS13520 0.65 +0.5
3,029,246 + ABZR86_RS13520 0.65 -0.1
3,029,246 + ABZR86_RS13520 0.65 -0.4
3,029,246 + ABZR86_RS13520 0.65 -0.0
3,029,246 + ABZR86_RS13520 0.65 +0.3
3,029,246 + ABZR86_RS13520 0.65 +0.1
3,029,246 + ABZR86_RS13520 0.65 +0.6
3,029,246 + ABZR86_RS13520 0.65 +0.7
3,029,247 - ABZR86_RS13520 0.65 -0.3
3,029,247 - ABZR86_RS13520 0.65 -0.3
3,029,247 - ABZR86_RS13520 0.65 +0.5
3,029,247 - ABZR86_RS13520 0.65 +0.1
3,029,247 - ABZR86_RS13520 0.65 +0.4
3,029,247 - ABZR86_RS13520 0.65 +0.2
3,029,247 - ABZR86_RS13520 0.65 +0.4
3,029,247 - ABZR86_RS13520 0.65 +0.7
3,029,247 - ABZR86_RS13520 0.65 +0.5
3,029,247 - ABZR86_RS13520 0.65 -0.3
3,029,247 - ABZR86_RS13520 0.65 +0.2
3,029,247 - ABZR86_RS13520 0.65 +0.1
3,029,247 - ABZR86_RS13520 0.65 +0.8
3,029,247 - ABZR86_RS13520 0.65 +0.2
3,029,247 - ABZR86_RS13520 0.65 -0.4
3,029,247 - ABZR86_RS13520 0.65 +0.8
3,030,462 + +1.5
3,030,462 + +0.6
3,030,462 + +0.3
3,030,462 + -1.3
3,030,462 + -0.1
3,030,462 + +1.0
3,030,462 + +0.9
3,030,463 - +0.4
3,030,463 - +0.2
3,030,463 - +0.4
3,030,463 - +0.1
3,030,463 - +0.6
3,030,463 - +0.6
3,030,463 - +0.3
3,030,463 - +0.1
3,030,463 - +0.4

Or see this region's nucleotide sequence