Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS12730

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS12720 and ABZR86_RS12725 are separated by 93 nucleotidesABZR86_RS12725 and ABZR86_RS12730 are separated by 130 nucleotidesABZR86_RS12730 and ABZR86_RS12735 overlap by 4 nucleotidesABZR86_RS12735 and ABZR86_RS12740 overlap by 90 nucleotides ABZR86_RS12720: ABZR86_RS12720 - thiol:disulfide interchange protein DsbA/DsbL, at 2,851,296 to 2,852,186 _RS12720 ABZR86_RS12725: ABZR86_RS12725 - thiol:disulfide interchange protein DsbA/DsbL, at 2,852,280 to 2,852,936 _RS12725 ABZR86_RS12730: ABZR86_RS12730 - endonuclease/exonuclease/phosphatase family protein, at 2,853,067 to 2,853,873 _RS12730 ABZR86_RS12735: ABZR86_RS12735 - hypothetical protein, at 2,853,870 to 2,854,286 _RS12735 ABZR86_RS12740: ABZR86_RS12740 - glycoside hydrolase family 17, at 2,854,197 to 2,855,804 _RS12740 Position (kb) 2853 2854Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2852.098 kb on - strandat 2852.098 kb on - strandat 2852.127 kb on + strandat 2852.184 kb on + strandat 2852.184 kb on + strandat 2852.184 kb on + strandat 2852.184 kb on + strandat 2852.184 kb on + strandat 2852.184 kb on + strandat 2852.184 kb on + strandat 2852.185 kb on - strandat 2852.185 kb on - strandat 2852.185 kb on - strandat 2852.185 kb on - strandat 2852.185 kb on - strandat 2852.185 kb on - strandat 2852.220 kb on + strandat 2852.221 kb on - strandat 2852.221 kb on - strandat 2852.222 kb on + strandat 2852.222 kb on + strandat 2852.222 kb on + strandat 2852.222 kb on + strandat 2852.223 kb on - strandat 2852.223 kb on - strandat 2852.223 kb on - strandat 2852.223 kb on - strandat 2852.223 kb on - strandat 2852.263 kb on - strandat 2852.382 kb on + strand, within ABZR86_RS12725at 2852.400 kb on + strand, within ABZR86_RS12725at 2852.401 kb on - strand, within ABZR86_RS12725at 2852.401 kb on - strand, within ABZR86_RS12725at 2852.401 kb on - strand, within ABZR86_RS12725at 2852.401 kb on - strand, within ABZR86_RS12725at 2852.401 kb on - strand, within ABZR86_RS12725at 2852.401 kb on - strand, within ABZR86_RS12725at 2852.401 kb on - strand, within ABZR86_RS12725at 2852.430 kb on + strand, within ABZR86_RS12725at 2852.431 kb on - strand, within ABZR86_RS12725at 2852.472 kb on + strand, within ABZR86_RS12725at 2852.472 kb on + strand, within ABZR86_RS12725at 2852.473 kb on - strand, within ABZR86_RS12725at 2852.590 kb on - strand, within ABZR86_RS12725at 2852.590 kb on - strand, within ABZR86_RS12725at 2852.590 kb on - strand, within ABZR86_RS12725at 2852.601 kb on + strand, within ABZR86_RS12725at 2852.604 kb on + strand, within ABZR86_RS12725at 2852.605 kb on - strand, within ABZR86_RS12725at 2852.605 kb on - strand, within ABZR86_RS12725at 2852.677 kb on - strand, within ABZR86_RS12725at 2852.709 kb on + strand, within ABZR86_RS12725at 2852.709 kb on + strand, within ABZR86_RS12725at 2852.710 kb on - strand, within ABZR86_RS12725at 2852.710 kb on - strand, within ABZR86_RS12725at 2852.712 kb on + strand, within ABZR86_RS12725at 2852.712 kb on + strand, within ABZR86_RS12725at 2852.713 kb on - strand, within ABZR86_RS12725at 2852.713 kb on - strand, within ABZR86_RS12725at 2852.713 kb on - strand, within ABZR86_RS12725at 2852.853 kb on + strand, within ABZR86_RS12725at 2852.970 kb on + strandat 2852.971 kb on - strandat 2852.971 kb on - strandat 2853.157 kb on + strand, within ABZR86_RS12730at 2853.167 kb on - strand, within ABZR86_RS12730at 2853.319 kb on + strand, within ABZR86_RS12730at 2853.390 kb on + strand, within ABZR86_RS12730at 2853.391 kb on - strand, within ABZR86_RS12730at 2853.440 kb on - strand, within ABZR86_RS12730at 2853.440 kb on - strand, within ABZR86_RS12730at 2854.047 kb on + strand, within ABZR86_RS12735at 2854.047 kb on + strand, within ABZR86_RS12735at 2854.048 kb on - strand, within ABZR86_RS12735at 2854.048 kb on - strand, within ABZR86_RS12735at 2854.048 kb on - strand, within ABZR86_RS12735at 2854.155 kb on + strand, within ABZR86_RS12735at 2854.156 kb on - strand, within ABZR86_RS12735at 2854.156 kb on - strand, within ABZR86_RS12735at 2854.156 kb on - strand, within ABZR86_RS12735at 2854.156 kb on - strand, within ABZR86_RS12735at 2854.199 kb on - strandat 2854.199 kb on - strandat 2854.285 kb on - strandat 2854.356 kb on + strandat 2854.357 kb on - strandat 2854.357 kb on - strandat 2854.357 kb on - strandat 2854.357 kb on - strandat 2854.357 kb on - strandat 2854.423 kb on + strand, within ABZR86_RS12740at 2854.424 kb on - strand, within ABZR86_RS12740at 2854.669 kb on + strand, within ABZR86_RS12740at 2854.669 kb on + strand, within ABZR86_RS12740at 2854.669 kb on + strand, within ABZR86_RS12740at 2854.670 kb on - strand, within ABZR86_RS12740at 2854.670 kb on - strand, within ABZR86_RS12740

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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2,852,098 - -0.7
2,852,098 - -1.9
2,852,127 + -1.3
2,852,184 + -1.0
2,852,184 + +0.8
2,852,184 + -2.3
2,852,184 + +0.4
2,852,184 + +0.2
2,852,184 + -0.3
2,852,184 + -0.1
2,852,185 - -0.1
2,852,185 - +0.2
2,852,185 - -0.4
2,852,185 - -0.3
2,852,185 - +0.6
2,852,185 - +1.0
2,852,220 + +0.9
2,852,221 - -0.9
2,852,221 - -0.8
2,852,222 + -0.8
2,852,222 + -0.0
2,852,222 + +0.2
2,852,222 + -0.2
2,852,223 - +1.0
2,852,223 - -0.2
2,852,223 - +0.9
2,852,223 - -0.2
2,852,223 - -0.8
2,852,263 - +1.8
2,852,382 + ABZR86_RS12725 0.16 -0.3
2,852,400 + ABZR86_RS12725 0.18 +0.3
2,852,401 - ABZR86_RS12725 0.18 -0.3
2,852,401 - ABZR86_RS12725 0.18 +0.8
2,852,401 - ABZR86_RS12725 0.18 -0.9
2,852,401 - ABZR86_RS12725 0.18 -0.4
2,852,401 - ABZR86_RS12725 0.18 -0.3
2,852,401 - ABZR86_RS12725 0.18 -0.5
2,852,401 - ABZR86_RS12725 0.18 +0.3
2,852,430 + ABZR86_RS12725 0.23 +1.5
2,852,431 - ABZR86_RS12725 0.23 -0.9
2,852,472 + ABZR86_RS12725 0.29 +0.2
2,852,472 + ABZR86_RS12725 0.29 +0.5
2,852,473 - ABZR86_RS12725 0.29 +0.7
2,852,590 - ABZR86_RS12725 0.47 -0.8
2,852,590 - ABZR86_RS12725 0.47 -0.2
2,852,590 - ABZR86_RS12725 0.47 +0.3
2,852,601 + ABZR86_RS12725 0.49 +0.9
2,852,604 + ABZR86_RS12725 0.49 -0.5
2,852,605 - ABZR86_RS12725 0.49 +0.3
2,852,605 - ABZR86_RS12725 0.49 +1.3
2,852,677 - ABZR86_RS12725 0.60 +0.1
2,852,709 + ABZR86_RS12725 0.65 -0.6
2,852,709 + ABZR86_RS12725 0.65 +0.7
2,852,710 - ABZR86_RS12725 0.65 +0.4
2,852,710 - ABZR86_RS12725 0.65 +0.9
2,852,712 + ABZR86_RS12725 0.66 -0.5
2,852,712 + ABZR86_RS12725 0.66 -0.2
2,852,713 - ABZR86_RS12725 0.66 -3.3
2,852,713 - ABZR86_RS12725 0.66 -0.2
2,852,713 - ABZR86_RS12725 0.66 +0.2
2,852,853 + ABZR86_RS12725 0.87 -0.1
2,852,970 + -1.4
2,852,971 - +0.6
2,852,971 - -0.3
2,853,157 + ABZR86_RS12730 0.11 +1.2
2,853,167 - ABZR86_RS12730 0.12 +1.2
2,853,319 + ABZR86_RS12730 0.31 -0.1
2,853,390 + ABZR86_RS12730 0.40 +0.7
2,853,391 - ABZR86_RS12730 0.40 +1.5
2,853,440 - ABZR86_RS12730 0.46 +1.3
2,853,440 - ABZR86_RS12730 0.46 +1.3
2,854,047 + ABZR86_RS12735 0.42 +0.1
2,854,047 + ABZR86_RS12735 0.42 -0.1
2,854,048 - ABZR86_RS12735 0.43 +0.2
2,854,048 - ABZR86_RS12735 0.43 +0.4
2,854,048 - ABZR86_RS12735 0.43 +0.4
2,854,155 + ABZR86_RS12735 0.68 +1.4
2,854,156 - ABZR86_RS12735 0.69 +1.6
2,854,156 - ABZR86_RS12735 0.69 -0.1
2,854,156 - ABZR86_RS12735 0.69 +0.3
2,854,156 - ABZR86_RS12735 0.69 -0.3
2,854,199 - +0.8
2,854,199 - -0.4
2,854,285 - -0.4
2,854,356 + -0.1
2,854,357 - +1.1
2,854,357 - +0.3
2,854,357 - +0.4
2,854,357 - -0.9
2,854,357 - -0.9
2,854,423 + ABZR86_RS12740 0.14 +0.3
2,854,424 - ABZR86_RS12740 0.14 +0.1
2,854,669 + ABZR86_RS12740 0.29 +1.7
2,854,669 + ABZR86_RS12740 0.29 -0.3
2,854,669 + ABZR86_RS12740 0.29 -0.1
2,854,670 - ABZR86_RS12740 0.29 +0.2
2,854,670 - ABZR86_RS12740 0.29 -0.3

Or see this region's nucleotide sequence