Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS12685

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS12675 and ABZR86_RS12680 overlap by 4 nucleotidesABZR86_RS12680 and ABZR86_RS12685 are separated by 55 nucleotidesABZR86_RS12685 and ABZR86_RS12690 are separated by 593 nucleotides ABZR86_RS12675: ABZR86_RS12675 - DUF692 domain-containing protein, at 2,842,505 to 2,843,353 _RS12675 ABZR86_RS12680: ABZR86_RS12680 - DNA-binding domain-containing protein, at 2,843,350 to 2,844,135 _RS12680 ABZR86_RS12685: ABZR86_RS12685 - AraC family transcriptional regulator, at 2,844,191 to 2,845,090 _RS12685 ABZR86_RS12690: ABZR86_RS12690 - peptidyl-dipeptidase Dcp, at 2,845,684 to 2,847,876 _RS12690 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2843.471 kb on - strand, within ABZR86_RS12680at 2843.599 kb on + strand, within ABZR86_RS12680at 2843.599 kb on + strand, within ABZR86_RS12680at 2843.599 kb on + strand, within ABZR86_RS12680at 2843.599 kb on + strand, within ABZR86_RS12680at 2843.599 kb on + strand, within ABZR86_RS12680at 2843.600 kb on - strand, within ABZR86_RS12680at 2843.600 kb on - strand, within ABZR86_RS12680at 2843.600 kb on - strand, within ABZR86_RS12680at 2843.600 kb on - strand, within ABZR86_RS12680at 2843.644 kb on + strand, within ABZR86_RS12680at 2843.645 kb on - strand, within ABZR86_RS12680at 2843.796 kb on - strand, within ABZR86_RS12680at 2844.134 kb on - strandat 2844.302 kb on + strand, within ABZR86_RS12685at 2844.302 kb on + strand, within ABZR86_RS12685at 2844.303 kb on - strand, within ABZR86_RS12685at 2844.303 kb on - strand, within ABZR86_RS12685at 2844.303 kb on - strand, within ABZR86_RS12685at 2844.335 kb on + strand, within ABZR86_RS12685at 2844.711 kb on + strand, within ABZR86_RS12685at 2844.719 kb on + strand, within ABZR86_RS12685at 2844.720 kb on - strand, within ABZR86_RS12685at 2844.914 kb on + strand, within ABZR86_RS12685at 2844.914 kb on + strand, within ABZR86_RS12685at 2844.915 kb on - strand, within ABZR86_RS12685at 2844.915 kb on - strand, within ABZR86_RS12685at 2844.915 kb on - strand, within ABZR86_RS12685at 2845.001 kb on + strandat 2845.001 kb on + strandat 2845.002 kb on - strandat 2845.002 kb on - strandat 2845.002 kb on - strandat 2845.234 kb on + strandat 2845.265 kb on + strandat 2845.265 kb on + strandat 2845.266 kb on - strandat 2845.266 kb on - strandat 2845.266 kb on - strandat 2845.266 kb on - strandat 2845.266 kb on - strandat 2845.266 kb on - strandat 2845.266 kb on - strandat 2845.266 kb on - strandat 2845.686 kb on - strandat 2845.769 kb on + strandat 2845.769 kb on + strandat 2845.770 kb on - strandat 2845.904 kb on + strand, within ABZR86_RS12690at 2845.904 kb on + strand, within ABZR86_RS12690at 2845.905 kb on - strand, within ABZR86_RS12690at 2845.910 kb on + strand, within ABZR86_RS12690at 2845.910 kb on + strand, within ABZR86_RS12690at 2845.910 kb on + strand, within ABZR86_RS12690at 2845.911 kb on - strand, within ABZR86_RS12690at 2845.911 kb on - strand, within ABZR86_RS12690at 2845.911 kb on - strand, within ABZR86_RS12690at 2845.911 kb on - strand, within ABZR86_RS12690at 2845.911 kb on - strand, within ABZR86_RS12690at 2845.911 kb on - strand, within ABZR86_RS12690at 2845.913 kb on + strand, within ABZR86_RS12690at 2845.953 kb on - strand, within ABZR86_RS12690at 2845.953 kb on - strand, within ABZR86_RS12690at 2845.979 kb on + strand, within ABZR86_RS12690at 2845.980 kb on - strand, within ABZR86_RS12690at 2845.980 kb on - strand, within ABZR86_RS12690at 2845.980 kb on - strand, within ABZR86_RS12690

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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2,843,471 - ABZR86_RS12680 0.15 -3.5
2,843,599 + ABZR86_RS12680 0.32 -2.4
2,843,599 + ABZR86_RS12680 0.32 -1.5
2,843,599 + ABZR86_RS12680 0.32 -2.7
2,843,599 + ABZR86_RS12680 0.32 -3.3
2,843,599 + ABZR86_RS12680 0.32 -3.1
2,843,600 - ABZR86_RS12680 0.32 -1.1
2,843,600 - ABZR86_RS12680 0.32 -3.0
2,843,600 - ABZR86_RS12680 0.32 -1.6
2,843,600 - ABZR86_RS12680 0.32 -2.7
2,843,644 + ABZR86_RS12680 0.37 -3.4
2,843,645 - ABZR86_RS12680 0.38 -4.1
2,843,796 - ABZR86_RS12680 0.57 -2.2
2,844,134 - -2.1
2,844,302 + ABZR86_RS12685 0.12 -1.7
2,844,302 + ABZR86_RS12685 0.12 -1.3
2,844,303 - ABZR86_RS12685 0.12 -1.3
2,844,303 - ABZR86_RS12685 0.12 -1.0
2,844,303 - ABZR86_RS12685 0.12 -2.0
2,844,335 + ABZR86_RS12685 0.16 -1.9
2,844,711 + ABZR86_RS12685 0.58 -1.5
2,844,719 + ABZR86_RS12685 0.59 -3.0
2,844,720 - ABZR86_RS12685 0.59 -3.0
2,844,914 + ABZR86_RS12685 0.80 -2.5
2,844,914 + ABZR86_RS12685 0.80 -1.7
2,844,915 - ABZR86_RS12685 0.80 -2.6
2,844,915 - ABZR86_RS12685 0.80 -3.1
2,844,915 - ABZR86_RS12685 0.80 -2.3
2,845,001 + -3.2
2,845,001 + -1.1
2,845,002 - -2.5
2,845,002 - -3.3
2,845,002 - -2.1
2,845,234 + -0.0
2,845,265 + +0.3
2,845,265 + +0.4
2,845,266 - -0.3
2,845,266 - -0.3
2,845,266 - +0.3
2,845,266 - -0.4
2,845,266 - -0.2
2,845,266 - -0.1
2,845,266 - +1.6
2,845,266 - -0.4
2,845,686 - -0.5
2,845,769 + -2.0
2,845,769 + +0.2
2,845,770 - +0.2
2,845,904 + ABZR86_RS12690 0.10 +0.5
2,845,904 + ABZR86_RS12690 0.10 +0.4
2,845,905 - ABZR86_RS12690 0.10 +0.1
2,845,910 + ABZR86_RS12690 0.10 -0.7
2,845,910 + ABZR86_RS12690 0.10 +0.3
2,845,910 + ABZR86_RS12690 0.10 +0.3
2,845,911 - ABZR86_RS12690 0.10 +0.7
2,845,911 - ABZR86_RS12690 0.10 +0.4
2,845,911 - ABZR86_RS12690 0.10 +0.2
2,845,911 - ABZR86_RS12690 0.10 -0.4
2,845,911 - ABZR86_RS12690 0.10 +0.3
2,845,911 - ABZR86_RS12690 0.10 +0.2
2,845,913 + ABZR86_RS12690 0.10 +0.2
2,845,953 - ABZR86_RS12690 0.12 +0.3
2,845,953 - ABZR86_RS12690 0.12 -2.3
2,845,979 + ABZR86_RS12690 0.13 +0.6
2,845,980 - ABZR86_RS12690 0.13 +0.3
2,845,980 - ABZR86_RS12690 0.13 +0.4
2,845,980 - ABZR86_RS12690 0.13 +0.6

Or see this region's nucleotide sequence