Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11540

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11535 and ABZR86_RS11540 are separated by 407 nucleotidesABZR86_RS11540 and ABZR86_RS11545 are separated by 86 nucleotides ABZR86_RS11535: ABZR86_RS11535 - protease pro-enzyme activation domain-containing protein, at 2,574,780 to 2,576,657 _RS11535 ABZR86_RS11540: ABZR86_RS11540 - methionine adenosyltransferase, at 2,577,065 to 2,578,264 _RS11540 ABZR86_RS11545: ABZR86_RS11545 - ATP-binding cassette domain-containing protein, at 2,578,351 to 2,580,219 _RS11545 Position (kb) 2577 2578 2579Strain fitness (log2 ratio) -2 -1 0 1at 2576.065 kb on - strand, within ABZR86_RS11535at 2576.083 kb on + strand, within ABZR86_RS11535at 2576.221 kb on + strand, within ABZR86_RS11535at 2576.221 kb on + strand, within ABZR86_RS11535at 2576.221 kb on + strand, within ABZR86_RS11535at 2576.222 kb on - strand, within ABZR86_RS11535at 2576.260 kb on + strand, within ABZR86_RS11535at 2576.261 kb on - strand, within ABZR86_RS11535at 2576.261 kb on - strand, within ABZR86_RS11535at 2576.290 kb on + strand, within ABZR86_RS11535at 2576.290 kb on + strand, within ABZR86_RS11535at 2576.290 kb on + strand, within ABZR86_RS11535at 2576.290 kb on + strand, within ABZR86_RS11535at 2576.291 kb on - strand, within ABZR86_RS11535at 2576.452 kb on + strand, within ABZR86_RS11535at 2576.452 kb on + strand, within ABZR86_RS11535at 2576.453 kb on - strand, within ABZR86_RS11535at 2576.453 kb on - strand, within ABZR86_RS11535at 2576.453 kb on - strand, within ABZR86_RS11535at 2576.453 kb on - strand, within ABZR86_RS11535at 2576.468 kb on - strand, within ABZR86_RS11535at 2576.468 kb on - strand, within ABZR86_RS11535at 2576.506 kb on + strandat 2576.648 kb on + strandat 2576.709 kb on + strandat 2576.710 kb on - strandat 2576.758 kb on + strandat 2576.759 kb on - strandat 2576.759 kb on - strandat 2576.759 kb on - strandat 2576.759 kb on - strandat 2576.867 kb on + strandat 2576.868 kb on - strandat 2576.868 kb on - strandat 2576.868 kb on - strandat 2576.984 kb on + strandat 2576.984 kb on + strandat 2576.984 kb on + strandat 2576.984 kb on + strandat 2576.985 kb on - strandat 2576.985 kb on - strandat 2577.010 kb on + strandat 2577.010 kb on + strandat 2577.010 kb on + strandat 2577.010 kb on + strandat 2577.010 kb on + strandat 2577.011 kb on - strandat 2577.011 kb on - strandat 2577.011 kb on - strandat 2577.011 kb on - strandat 2577.011 kb on - strandat 2577.011 kb on - strandat 2577.011 kb on - strandat 2578.262 kb on + strandat 2578.262 kb on + strandat 2578.263 kb on - strandat 2578.263 kb on - strandat 2578.263 kb on - strandat 2578.263 kb on - strandat 2578.344 kb on + strandat 2578.345 kb on - strandat 2578.446 kb on - strandat 2578.446 kb on - strandat 2578.446 kb on - strandat 2578.446 kb on - strandat 2578.598 kb on + strand, within ABZR86_RS11545at 2578.598 kb on + strand, within ABZR86_RS11545at 2579.042 kb on - strand, within ABZR86_RS11545at 2579.050 kb on + strand, within ABZR86_RS11545at 2579.051 kb on - strand, within ABZR86_RS11545at 2579.051 kb on - strand, within ABZR86_RS11545

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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2,576,065 - ABZR86_RS11535 0.68 +0.0
2,576,083 + ABZR86_RS11535 0.69 +0.4
2,576,221 + ABZR86_RS11535 0.77 +0.2
2,576,221 + ABZR86_RS11535 0.77 +0.6
2,576,221 + ABZR86_RS11535 0.77 -0.2
2,576,222 - ABZR86_RS11535 0.77 -0.4
2,576,260 + ABZR86_RS11535 0.79 +0.5
2,576,261 - ABZR86_RS11535 0.79 -0.1
2,576,261 - ABZR86_RS11535 0.79 -0.6
2,576,290 + ABZR86_RS11535 0.80 -0.3
2,576,290 + ABZR86_RS11535 0.80 +0.6
2,576,290 + ABZR86_RS11535 0.80 -1.3
2,576,290 + ABZR86_RS11535 0.80 +0.4
2,576,291 - ABZR86_RS11535 0.80 +0.2
2,576,452 + ABZR86_RS11535 0.89 +0.4
2,576,452 + ABZR86_RS11535 0.89 +0.2
2,576,453 - ABZR86_RS11535 0.89 +0.2
2,576,453 - ABZR86_RS11535 0.89 +0.1
2,576,453 - ABZR86_RS11535 0.89 -0.5
2,576,453 - ABZR86_RS11535 0.89 +0.2
2,576,468 - ABZR86_RS11535 0.90 -1.3
2,576,468 - ABZR86_RS11535 0.90 +0.3
2,576,506 + +0.4
2,576,648 + +0.1
2,576,709 + +0.3
2,576,710 - -0.7
2,576,758 + +0.2
2,576,759 - +0.5
2,576,759 - +0.9
2,576,759 - -0.3
2,576,759 - +0.3
2,576,867 + -1.9
2,576,868 - -1.7
2,576,868 - +0.9
2,576,868 - +1.2
2,576,984 + +0.1
2,576,984 + +0.8
2,576,984 + +1.6
2,576,984 + +0.6
2,576,985 - -1.2
2,576,985 - +0.5
2,577,010 + +0.6
2,577,010 + +0.3
2,577,010 + +0.3
2,577,010 + +0.9
2,577,010 + +1.1
2,577,011 - -1.5
2,577,011 - -0.7
2,577,011 - -2.3
2,577,011 - -0.7
2,577,011 - -0.9
2,577,011 - -1.4
2,577,011 - -1.6
2,578,262 + -0.5
2,578,262 + -1.6
2,578,263 - -2.3
2,578,263 - -1.2
2,578,263 - -1.2
2,578,263 - -1.2
2,578,344 + -0.1
2,578,345 - +0.1
2,578,446 - +0.7
2,578,446 - +0.6
2,578,446 - +1.0
2,578,446 - +0.1
2,578,598 + ABZR86_RS11545 0.13 -0.1
2,578,598 + ABZR86_RS11545 0.13 +0.4
2,579,042 - ABZR86_RS11545 0.37 +0.5
2,579,050 + ABZR86_RS11545 0.37 +0.1
2,579,051 - ABZR86_RS11545 0.37 +0.4
2,579,051 - ABZR86_RS11545 0.37 -0.3

Or see this region's nucleotide sequence