Experiment: Chlorite 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS11395 and ABZR86_RS11400 are separated by 42 nucleotides ABZR86_RS11400 and ABZR86_RS11405 are separated by 38 nucleotides ABZR86_RS11405 and ABZR86_RS11410 overlap by 4 nucleotides
ABZR86_RS11395: ABZR86_RS11395 - TcpQ domain-containing protein, at 2,544,975 to 2,545,442
_RS11395
ABZR86_RS11400: ABZR86_RS11400 - virB8 family protein, at 2,545,485 to 2,546,462
_RS11400
ABZR86_RS11405: ABZR86_RS11405 - TrbG/VirB9 family P-type conjugative transfer protein, at 2,546,501 to 2,547,229
_RS11405
ABZR86_RS11410: ABZR86_RS11410 - TrbI/VirB10 family protein, at 2,547,226 to 2,548,470
_RS11410
Position (kb)
2545
2546
2547 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2544.610 kb on - strand at 2544.618 kb on + strand at 2544.622 kb on + strand at 2544.623 kb on - strand at 2544.623 kb on - strand at 2544.623 kb on - strand at 2544.646 kb on + strand at 2544.673 kb on - strand at 2544.673 kb on - strand at 2544.923 kb on - strand at 2544.957 kb on - strand at 2544.963 kb on + strand at 2545.012 kb on + strand at 2545.013 kb on - strand at 2545.131 kb on + strand, within ABZR86_RS11395 at 2545.131 kb on + strand, within ABZR86_RS11395 at 2545.131 kb on + strand, within ABZR86_RS11395 at 2545.132 kb on - strand, within ABZR86_RS11395 at 2545.140 kb on + strand, within ABZR86_RS11395 at 2545.140 kb on + strand, within ABZR86_RS11395 at 2545.141 kb on - strand, within ABZR86_RS11395 at 2545.216 kb on - strand, within ABZR86_RS11395 at 2545.216 kb on - strand, within ABZR86_RS11395 at 2545.234 kb on - strand, within ABZR86_RS11395 at 2545.243 kb on - strand, within ABZR86_RS11395 at 2545.308 kb on + strand, within ABZR86_RS11395 at 2545.308 kb on + strand, within ABZR86_RS11395 at 2545.308 kb on + strand, within ABZR86_RS11395 at 2545.308 kb on + strand, within ABZR86_RS11395 at 2545.309 kb on - strand, within ABZR86_RS11395 at 2545.309 kb on - strand, within ABZR86_RS11395 at 2545.440 kb on + strand at 2545.440 kb on + strand at 2545.440 kb on + strand at 2545.440 kb on + strand at 2545.647 kb on + strand, within ABZR86_RS11400 at 2545.647 kb on + strand, within ABZR86_RS11400 at 2545.647 kb on + strand, within ABZR86_RS11400 at 2545.647 kb on + strand, within ABZR86_RS11400 at 2545.647 kb on + strand, within ABZR86_RS11400 at 2545.648 kb on - strand, within ABZR86_RS11400 at 2545.648 kb on - strand, within ABZR86_RS11400 at 2545.677 kb on + strand, within ABZR86_RS11400 at 2545.677 kb on + strand, within ABZR86_RS11400 at 2545.678 kb on - strand, within ABZR86_RS11400 at 2545.698 kb on + strand, within ABZR86_RS11400 at 2545.930 kb on - strand, within ABZR86_RS11400 at 2545.938 kb on + strand, within ABZR86_RS11400 at 2545.938 kb on + strand, within ABZR86_RS11400 at 2545.938 kb on + strand, within ABZR86_RS11400 at 2545.939 kb on - strand, within ABZR86_RS11400 at 2545.939 kb on - strand, within ABZR86_RS11400 at 2546.046 kb on + strand, within ABZR86_RS11400 at 2546.046 kb on + strand, within ABZR86_RS11400 at 2546.047 kb on - strand, within ABZR86_RS11400 at 2546.047 kb on - strand, within ABZR86_RS11400 at 2546.433 kb on - strand at 2546.479 kb on - strand at 2546.552 kb on + strand at 2546.553 kb on - strand at 2546.553 kb on - strand at 2546.576 kb on + strand, within ABZR86_RS11405 at 2546.577 kb on - strand, within ABZR86_RS11405 at 2546.577 kb on - strand, within ABZR86_RS11405 at 2546.645 kb on + strand, within ABZR86_RS11405 at 2546.699 kb on + strand, within ABZR86_RS11405 at 2546.700 kb on - strand, within ABZR86_RS11405 at 2546.762 kb on + strand, within ABZR86_RS11405 at 2546.762 kb on + strand, within ABZR86_RS11405 at 2546.762 kb on + strand, within ABZR86_RS11405 at 2546.763 kb on - strand, within ABZR86_RS11405 at 2546.763 kb on - strand, within ABZR86_RS11405 at 2546.763 kb on - strand, within ABZR86_RS11405 at 2546.763 kb on - strand, within ABZR86_RS11405 at 2546.834 kb on + strand, within ABZR86_RS11405 at 2546.853 kb on - strand, within ABZR86_RS11405 at 2546.940 kb on - strand, within ABZR86_RS11405 at 2546.957 kb on + strand, within ABZR86_RS11405 at 2547.009 kb on - strand, within ABZR86_RS11405 at 2547.029 kb on + strand, within ABZR86_RS11405 at 2547.029 kb on + strand, within ABZR86_RS11405 at 2547.030 kb on - strand, within ABZR86_RS11405 at 2547.030 kb on - strand, within ABZR86_RS11405 at 2547.083 kb on + strand, within ABZR86_RS11405 at 2547.164 kb on + strand at 2547.164 kb on + strand at 2547.165 kb on - strand at 2547.201 kb on + strand at 2547.201 kb on + strand at 2547.202 kb on - strand at 2547.244 kb on + strand at 2547.245 kb on - strand at 2547.245 kb on - strand at 2547.317 kb on - strand at 2547.328 kb on + strand at 2547.328 kb on + strand at 2547.328 kb on + strand at 2547.328 kb on + strand at 2547.329 kb on - strand at 2547.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.32 mM remove 2,544,610 - -0.0 2,544,618 + -0.6 2,544,622 + -0.4 2,544,623 - +0.0 2,544,623 - +0.0 2,544,623 - -1.4 2,544,646 + +0.7 2,544,673 - +0.8 2,544,673 - +0.1 2,544,923 - +0.6 2,544,957 - -0.1 2,544,963 + -1.2 2,545,012 + +0.3 2,545,013 - +0.8 2,545,131 + ABZR86_RS11395 0.33 +0.1 2,545,131 + ABZR86_RS11395 0.33 -0.5 2,545,131 + ABZR86_RS11395 0.33 +0.4 2,545,132 - ABZR86_RS11395 0.34 +0.4 2,545,140 + ABZR86_RS11395 0.35 +0.3 2,545,140 + ABZR86_RS11395 0.35 -0.1 2,545,141 - ABZR86_RS11395 0.35 +0.0 2,545,216 - ABZR86_RS11395 0.51 +0.4 2,545,216 - ABZR86_RS11395 0.51 +1.2 2,545,234 - ABZR86_RS11395 0.55 +0.8 2,545,243 - ABZR86_RS11395 0.57 -0.2 2,545,308 + ABZR86_RS11395 0.71 -0.4 2,545,308 + ABZR86_RS11395 0.71 +0.1 2,545,308 + ABZR86_RS11395 0.71 +0.3 2,545,308 + ABZR86_RS11395 0.71 -0.6 2,545,309 - ABZR86_RS11395 0.71 -0.0 2,545,309 - ABZR86_RS11395 0.71 -0.5 2,545,440 + -0.0 2,545,440 + -0.1 2,545,440 + -0.4 2,545,440 + -2.9 2,545,647 + ABZR86_RS11400 0.17 -0.2 2,545,647 + ABZR86_RS11400 0.17 +0.6 2,545,647 + ABZR86_RS11400 0.17 +0.2 2,545,647 + ABZR86_RS11400 0.17 -0.0 2,545,647 + ABZR86_RS11400 0.17 -0.3 2,545,648 - ABZR86_RS11400 0.17 +0.4 2,545,648 - ABZR86_RS11400 0.17 -2.1 2,545,677 + ABZR86_RS11400 0.20 -0.1 2,545,677 + ABZR86_RS11400 0.20 -0.4 2,545,678 - ABZR86_RS11400 0.20 -1.5 2,545,698 + ABZR86_RS11400 0.22 +0.4 2,545,930 - ABZR86_RS11400 0.46 -0.0 2,545,938 + ABZR86_RS11400 0.46 -0.4 2,545,938 + ABZR86_RS11400 0.46 +0.2 2,545,938 + ABZR86_RS11400 0.46 -1.6 2,545,939 - ABZR86_RS11400 0.46 -0.4 2,545,939 - ABZR86_RS11400 0.46 +0.1 2,546,046 + ABZR86_RS11400 0.57 -0.2 2,546,046 + ABZR86_RS11400 0.57 +0.5 2,546,047 - ABZR86_RS11400 0.57 -0.9 2,546,047 - ABZR86_RS11400 0.57 +0.2 2,546,433 - -0.9 2,546,479 - +0.1 2,546,552 + -1.3 2,546,553 - +0.2 2,546,553 - +0.2 2,546,576 + ABZR86_RS11405 0.10 +0.7 2,546,577 - ABZR86_RS11405 0.10 +0.1 2,546,577 - ABZR86_RS11405 0.10 +0.4 2,546,645 + ABZR86_RS11405 0.20 -0.9 2,546,699 + ABZR86_RS11405 0.27 +1.2 2,546,700 - ABZR86_RS11405 0.27 +0.3 2,546,762 + ABZR86_RS11405 0.36 -0.2 2,546,762 + ABZR86_RS11405 0.36 -0.9 2,546,762 + ABZR86_RS11405 0.36 -1.0 2,546,763 - ABZR86_RS11405 0.36 +0.2 2,546,763 - ABZR86_RS11405 0.36 -0.1 2,546,763 - ABZR86_RS11405 0.36 +0.2 2,546,763 - ABZR86_RS11405 0.36 -1.2 2,546,834 + ABZR86_RS11405 0.46 +0.1 2,546,853 - ABZR86_RS11405 0.48 +0.2 2,546,940 - ABZR86_RS11405 0.60 -0.0 2,546,957 + ABZR86_RS11405 0.63 +0.9 2,547,009 - ABZR86_RS11405 0.70 +0.7 2,547,029 + ABZR86_RS11405 0.72 -0.2 2,547,029 + ABZR86_RS11405 0.72 +0.3 2,547,030 - ABZR86_RS11405 0.73 -0.8 2,547,030 - ABZR86_RS11405 0.73 +0.5 2,547,083 + ABZR86_RS11405 0.80 +0.1 2,547,164 + -1.9 2,547,164 + -0.9 2,547,165 - -1.0 2,547,201 + +0.3 2,547,201 + -0.7 2,547,202 - +0.4 2,547,244 + +0.4 2,547,245 - +0.6 2,547,245 - +0.3 2,547,317 - +0.3 2,547,328 + -0.8 2,547,328 + -0.5 2,547,328 + -0.9 2,547,328 + +0.0 2,547,329 - -0.0 2,547,329 - +0.0
Or see this region's nucleotide sequence