Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09545

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09540 and ABZR86_RS09545 are separated by 162 nucleotidesABZR86_RS09545 and ABZR86_RS09550 are separated by 30 nucleotides ABZR86_RS09540: ABZR86_RS09540 - tRNA guanosine(34) transglycosylase Tgt, at 2,125,393 to 2,126,508 _RS09540 ABZR86_RS09545: ABZR86_RS09545 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 2,126,671 to 2,127,756 _RS09545 ABZR86_RS09550: ABZR86_RS09550 - hypothetical protein, at 2,127,787 to 2,130,213 _RS09550 Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -3 -2 -1 0 1at 2126.140 kb on + strand, within ABZR86_RS09540at 2126.140 kb on + strand, within ABZR86_RS09540at 2126.140 kb on + strand, within ABZR86_RS09540at 2126.140 kb on + strand, within ABZR86_RS09540at 2126.141 kb on - strand, within ABZR86_RS09540at 2126.315 kb on + strand, within ABZR86_RS09540at 2126.315 kb on + strand, within ABZR86_RS09540at 2126.396 kb on + strand, within ABZR86_RS09540at 2126.396 kb on + strand, within ABZR86_RS09540at 2126.396 kb on + strand, within ABZR86_RS09540at 2126.397 kb on - strandat 2126.397 kb on - strandat 2126.397 kb on - strandat 2126.397 kb on - strandat 2126.517 kb on + strandat 2126.705 kb on + strandat 2126.853 kb on - strand, within ABZR86_RS09545at 2127.101 kb on + strand, within ABZR86_RS09545at 2127.251 kb on + strand, within ABZR86_RS09545at 2127.251 kb on + strand, within ABZR86_RS09545at 2127.252 kb on - strand, within ABZR86_RS09545at 2127.252 kb on - strand, within ABZR86_RS09545at 2127.252 kb on - strand, within ABZR86_RS09545at 2127.603 kb on + strand, within ABZR86_RS09545at 2127.603 kb on + strand, within ABZR86_RS09545at 2127.603 kb on + strand, within ABZR86_RS09545at 2127.788 kb on + strandat 2127.789 kb on - strandat 2127.828 kb on + strandat 2127.882 kb on + strandat 2127.882 kb on + strandat 2127.883 kb on - strandat 2127.883 kb on - strandat 2127.914 kb on + strandat 2127.914 kb on + strandat 2127.914 kb on + strandat 2127.914 kb on + strandat 2127.914 kb on + strandat 2127.914 kb on + strandat 2127.915 kb on - strandat 2127.915 kb on - strandat 2127.915 kb on - strandat 2127.915 kb on - strandat 2127.915 kb on - strandat 2127.915 kb on - strandat 2127.915 kb on - strandat 2127.995 kb on + strandat 2127.996 kb on - strandat 2127.996 kb on - strandat 2127.996 kb on - strandat 2128.013 kb on + strandat 2128.014 kb on - strandat 2128.014 kb on - strandat 2128.014 kb on - strandat 2128.022 kb on + strandat 2128.023 kb on - strandat 2128.023 kb on - strandat 2128.088 kb on + strand, within ABZR86_RS09550at 2128.088 kb on + strand, within ABZR86_RS09550at 2128.089 kb on - strand, within ABZR86_RS09550at 2128.202 kb on + strand, within ABZR86_RS09550at 2128.340 kb on + strand, within ABZR86_RS09550at 2128.340 kb on + strand, within ABZR86_RS09550at 2128.341 kb on - strand, within ABZR86_RS09550at 2128.341 kb on - strand, within ABZR86_RS09550at 2128.341 kb on - strand, within ABZR86_RS09550at 2128.341 kb on - strand, within ABZR86_RS09550at 2128.406 kb on + strand, within ABZR86_RS09550at 2128.406 kb on + strand, within ABZR86_RS09550at 2128.407 kb on - strand, within ABZR86_RS09550at 2128.407 kb on - strand, within ABZR86_RS09550at 2128.532 kb on + strand, within ABZR86_RS09550at 2128.532 kb on + strand, within ABZR86_RS09550at 2128.532 kb on + strand, within ABZR86_RS09550at 2128.532 kb on + strand, within ABZR86_RS09550at 2128.532 kb on + strand, within ABZR86_RS09550at 2128.533 kb on - strand, within ABZR86_RS09550at 2128.623 kb on - strand, within ABZR86_RS09550at 2128.625 kb on + strand, within ABZR86_RS09550at 2128.626 kb on - strand, within ABZR86_RS09550at 2128.626 kb on - strand, within ABZR86_RS09550at 2128.736 kb on + strand, within ABZR86_RS09550at 2128.737 kb on - strand, within ABZR86_RS09550

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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2,126,140 + ABZR86_RS09540 0.67 -1.8
2,126,140 + ABZR86_RS09540 0.67 -1.9
2,126,140 + ABZR86_RS09540 0.67 -1.4
2,126,140 + ABZR86_RS09540 0.67 +0.3
2,126,141 - ABZR86_RS09540 0.67 -3.5
2,126,315 + ABZR86_RS09540 0.83 -2.6
2,126,315 + ABZR86_RS09540 0.83 -3.2
2,126,396 + ABZR86_RS09540 0.90 -0.0
2,126,396 + ABZR86_RS09540 0.90 -1.9
2,126,396 + ABZR86_RS09540 0.90 -2.0
2,126,397 - -1.4
2,126,397 - -0.7
2,126,397 - -0.9
2,126,397 - -1.7
2,126,517 + -0.3
2,126,705 + -0.8
2,126,853 - ABZR86_RS09545 0.17 -2.2
2,127,101 + ABZR86_RS09545 0.40 -1.9
2,127,251 + ABZR86_RS09545 0.53 -1.3
2,127,251 + ABZR86_RS09545 0.53 -0.5
2,127,252 - ABZR86_RS09545 0.53 -1.5
2,127,252 - ABZR86_RS09545 0.53 -0.1
2,127,252 - ABZR86_RS09545 0.53 -2.1
2,127,603 + ABZR86_RS09545 0.86 -1.0
2,127,603 + ABZR86_RS09545 0.86 -2.3
2,127,603 + ABZR86_RS09545 0.86 -1.1
2,127,788 + -0.6
2,127,789 - +0.2
2,127,828 + -0.4
2,127,882 + +0.2
2,127,882 + -0.8
2,127,883 - +0.8
2,127,883 - +0.0
2,127,914 + +0.1
2,127,914 + +0.3
2,127,914 + +0.3
2,127,914 + +0.2
2,127,914 + -0.1
2,127,914 + +0.1
2,127,915 - +0.5
2,127,915 - +0.1
2,127,915 - -0.2
2,127,915 - +0.3
2,127,915 - -0.0
2,127,915 - +1.4
2,127,915 - +0.0
2,127,995 + -0.1
2,127,996 - -0.1
2,127,996 - +0.1
2,127,996 - -0.0
2,128,013 + -0.2
2,128,014 - -0.7
2,128,014 - -1.7
2,128,014 - +0.1
2,128,022 + -0.2
2,128,023 - -0.9
2,128,023 - -0.3
2,128,088 + ABZR86_RS09550 0.12 +0.2
2,128,088 + ABZR86_RS09550 0.12 +0.4
2,128,089 - ABZR86_RS09550 0.12 -0.3
2,128,202 + ABZR86_RS09550 0.17 +0.1
2,128,340 + ABZR86_RS09550 0.23 -0.5
2,128,340 + ABZR86_RS09550 0.23 +0.1
2,128,341 - ABZR86_RS09550 0.23 +0.4
2,128,341 - ABZR86_RS09550 0.23 -0.4
2,128,341 - ABZR86_RS09550 0.23 -0.3
2,128,341 - ABZR86_RS09550 0.23 +1.3
2,128,406 + ABZR86_RS09550 0.26 +0.4
2,128,406 + ABZR86_RS09550 0.26 +0.6
2,128,407 - ABZR86_RS09550 0.26 -1.0
2,128,407 - ABZR86_RS09550 0.26 +0.4
2,128,532 + ABZR86_RS09550 0.31 -0.4
2,128,532 + ABZR86_RS09550 0.31 +0.1
2,128,532 + ABZR86_RS09550 0.31 -0.1
2,128,532 + ABZR86_RS09550 0.31 -0.0
2,128,532 + ABZR86_RS09550 0.31 -0.3
2,128,533 - ABZR86_RS09550 0.31 -0.7
2,128,623 - ABZR86_RS09550 0.34 -0.2
2,128,625 + ABZR86_RS09550 0.35 -0.2
2,128,626 - ABZR86_RS09550 0.35 +0.6
2,128,626 - ABZR86_RS09550 0.35 -1.9
2,128,736 + ABZR86_RS09550 0.39 +0.0
2,128,737 - ABZR86_RS09550 0.39 +0.7

Or see this region's nucleotide sequence