Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09085

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09075 and ABZR86_RS09080 are separated by 5 nucleotidesABZR86_RS09080 and ABZR86_RS09085 are separated by 139 nucleotidesABZR86_RS09085 and ABZR86_RS09090 are separated by 163 nucleotidesABZR86_RS09090 and ABZR86_RS09095 are separated by 88 nucleotides ABZR86_RS09075: ABZR86_RS09075 - NrsF family protein, at 2,017,827 to 2,018,480 _RS09075 ABZR86_RS09080: ABZR86_RS09080 - sigma-70 family RNA polymerase sigma factor, at 2,018,486 to 2,019,142 _RS09080 ABZR86_RS09085: ABZR86_RS09085 - cytochrome c biogenesis protein DipZ, at 2,019,282 to 2,021,003 _RS09085 ABZR86_RS09090: ABZR86_RS09090 - peptide-methionine (R)-S-oxide reductase MsrB, at 2,021,167 to 2,021,859 _RS09090 ABZR86_RS09095: ABZR86_RS09095 - nicotinate-nucleotide adenylyltransferase, at 2,021,948 to 2,022,583 _RS09095 Position (kb) 2019 2020 2021 2022Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2018.336 kb on - strand, within ABZR86_RS09075at 2018.503 kb on + strandat 2018.829 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.977 kb on - strand, within ABZR86_RS09080at 2019.096 kb on - strandat 2019.096 kb on - strandat 2019.104 kb on + strandat 2019.225 kb on + strandat 2019.225 kb on + strandat 2019.225 kb on + strandat 2019.226 kb on - strandat 2019.226 kb on - strandat 2019.250 kb on + strandat 2019.251 kb on - strandat 2019.289 kb on + strandat 2019.290 kb on - strandat 2019.303 kb on + strandat 2019.303 kb on + strandat 2019.304 kb on - strandat 2019.304 kb on - strandat 2019.304 kb on - strandat 2019.490 kb on - strand, within ABZR86_RS09085at 2019.490 kb on - strand, within ABZR86_RS09085at 2019.765 kb on + strand, within ABZR86_RS09085at 2019.765 kb on + strand, within ABZR86_RS09085at 2019.765 kb on + strand, within ABZR86_RS09085at 2019.766 kb on - strand, within ABZR86_RS09085at 2020.152 kb on + strand, within ABZR86_RS09085at 2020.152 kb on + strand, within ABZR86_RS09085at 2020.153 kb on - strand, within ABZR86_RS09085at 2020.153 kb on - strand, within ABZR86_RS09085at 2020.153 kb on - strand, within ABZR86_RS09085at 2020.153 kb on - strand, within ABZR86_RS09085at 2020.153 kb on - strand, within ABZR86_RS09085at 2020.153 kb on - strand, within ABZR86_RS09085at 2020.185 kb on + strand, within ABZR86_RS09085at 2020.185 kb on + strand, within ABZR86_RS09085at 2020.186 kb on - strand, within ABZR86_RS09085at 2020.209 kb on + strand, within ABZR86_RS09085at 2020.209 kb on + strand, within ABZR86_RS09085at 2020.209 kb on + strand, within ABZR86_RS09085at 2020.209 kb on + strand, within ABZR86_RS09085at 2020.210 kb on - strand, within ABZR86_RS09085at 2020.210 kb on - strand, within ABZR86_RS09085at 2020.210 kb on - strand, within ABZR86_RS09085at 2020.210 kb on - strand, within ABZR86_RS09085at 2020.210 kb on - strand, within ABZR86_RS09085at 2020.210 kb on - strand, within ABZR86_RS09085at 2020.231 kb on + strand, within ABZR86_RS09085at 2020.314 kb on + strand, within ABZR86_RS09085at 2020.314 kb on + strand, within ABZR86_RS09085at 2020.339 kb on - strand, within ABZR86_RS09085at 2020.383 kb on + strand, within ABZR86_RS09085at 2020.383 kb on + strand, within ABZR86_RS09085at 2020.383 kb on + strand, within ABZR86_RS09085at 2020.384 kb on - strand, within ABZR86_RS09085at 2020.576 kb on - strand, within ABZR86_RS09085at 2020.642 kb on - strand, within ABZR86_RS09085at 2020.642 kb on - strand, within ABZR86_RS09085at 2021.057 kb on - strandat 2021.057 kb on - strandat 2021.090 kb on + strandat 2021.189 kb on + strandat 2021.222 kb on + strandat 2021.223 kb on - strandat 2021.223 kb on - strandat 2021.223 kb on - strandat 2021.223 kb on - strandat 2021.310 kb on - strand, within ABZR86_RS09090at 2021.331 kb on + strand, within ABZR86_RS09090at 2021.331 kb on + strand, within ABZR86_RS09090at 2021.331 kb on + strand, within ABZR86_RS09090at 2021.342 kb on + strand, within ABZR86_RS09090at 2021.370 kb on + strand, within ABZR86_RS09090at 2021.474 kb on + strand, within ABZR86_RS09090at 2021.566 kb on + strand, within ABZR86_RS09090at 2021.713 kb on + strand, within ABZR86_RS09090at 2021.713 kb on + strand, within ABZR86_RS09090at 2021.714 kb on - strand, within ABZR86_RS09090at 2021.813 kb on - strandat 2021.870 kb on - strandat 2021.870 kb on - strandat 2021.949 kb on + strandat 2021.949 kb on + strandat 2021.950 kb on - strandat 2021.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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2,018,336 - ABZR86_RS09075 0.78 -2.0
2,018,503 + -0.8
2,018,829 + ABZR86_RS09080 0.52 -0.5
2,018,847 + ABZR86_RS09080 0.55 -0.7
2,018,847 + ABZR86_RS09080 0.55 -0.5
2,018,847 + ABZR86_RS09080 0.55 +0.8
2,018,847 + ABZR86_RS09080 0.55 -1.1
2,018,847 + ABZR86_RS09080 0.55 -0.5
2,018,847 + ABZR86_RS09080 0.55 -1.1
2,018,848 - ABZR86_RS09080 0.55 -2.4
2,018,848 - ABZR86_RS09080 0.55 -3.0
2,018,848 - ABZR86_RS09080 0.55 -1.6
2,018,848 - ABZR86_RS09080 0.55 -2.9
2,018,851 + ABZR86_RS09080 0.56 -0.0
2,018,851 + ABZR86_RS09080 0.56 -1.2
2,018,851 + ABZR86_RS09080 0.56 -1.9
2,018,851 + ABZR86_RS09080 0.56 -0.2
2,018,851 + ABZR86_RS09080 0.56 -0.4
2,018,851 + ABZR86_RS09080 0.56 -0.3
2,018,851 + ABZR86_RS09080 0.56 -1.2
2,018,852 - ABZR86_RS09080 0.56 -2.1
2,018,852 - ABZR86_RS09080 0.56 -1.7
2,018,852 - ABZR86_RS09080 0.56 -2.6
2,018,852 - ABZR86_RS09080 0.56 -3.1
2,018,852 - ABZR86_RS09080 0.56 -4.5
2,018,977 - ABZR86_RS09080 0.75 -1.5
2,019,096 - -0.0
2,019,096 - -1.6
2,019,104 + +0.9
2,019,225 + -1.0
2,019,225 + +0.8
2,019,225 + -0.4
2,019,226 - +0.8
2,019,226 - +0.7
2,019,250 + -0.3
2,019,251 - +0.6
2,019,289 + -1.3
2,019,290 - +0.4
2,019,303 + -1.1
2,019,303 + -1.3
2,019,304 - -0.6
2,019,304 - +0.3
2,019,304 - +0.8
2,019,490 - ABZR86_RS09085 0.12 -0.9
2,019,490 - ABZR86_RS09085 0.12 +0.6
2,019,765 + ABZR86_RS09085 0.28 -0.9
2,019,765 + ABZR86_RS09085 0.28 -1.6
2,019,765 + ABZR86_RS09085 0.28 -2.8
2,019,766 - ABZR86_RS09085 0.28 -0.8
2,020,152 + ABZR86_RS09085 0.51 +0.6
2,020,152 + ABZR86_RS09085 0.51 -0.5
2,020,153 - ABZR86_RS09085 0.51 -1.0
2,020,153 - ABZR86_RS09085 0.51 -1.2
2,020,153 - ABZR86_RS09085 0.51 +0.0
2,020,153 - ABZR86_RS09085 0.51 -0.6
2,020,153 - ABZR86_RS09085 0.51 -0.5
2,020,153 - ABZR86_RS09085 0.51 -0.5
2,020,185 + ABZR86_RS09085 0.52 -0.6
2,020,185 + ABZR86_RS09085 0.52 -0.3
2,020,186 - ABZR86_RS09085 0.52 -0.5
2,020,209 + ABZR86_RS09085 0.54 +0.2
2,020,209 + ABZR86_RS09085 0.54 -0.5
2,020,209 + ABZR86_RS09085 0.54 -0.6
2,020,209 + ABZR86_RS09085 0.54 -0.7
2,020,210 - ABZR86_RS09085 0.54 -2.3
2,020,210 - ABZR86_RS09085 0.54 -0.2
2,020,210 - ABZR86_RS09085 0.54 -0.6
2,020,210 - ABZR86_RS09085 0.54 -2.2
2,020,210 - ABZR86_RS09085 0.54 -1.4
2,020,210 - ABZR86_RS09085 0.54 -1.8
2,020,231 + ABZR86_RS09085 0.55 -0.5
2,020,314 + ABZR86_RS09085 0.60 -1.2
2,020,314 + ABZR86_RS09085 0.60 -1.7
2,020,339 - ABZR86_RS09085 0.61 -1.6
2,020,383 + ABZR86_RS09085 0.64 -1.5
2,020,383 + ABZR86_RS09085 0.64 -0.9
2,020,383 + ABZR86_RS09085 0.64 -1.1
2,020,384 - ABZR86_RS09085 0.64 -1.7
2,020,576 - ABZR86_RS09085 0.75 -1.6
2,020,642 - ABZR86_RS09085 0.79 -1.6
2,020,642 - ABZR86_RS09085 0.79 -0.5
2,021,057 - -0.1
2,021,057 - +0.0
2,021,090 + -0.3
2,021,189 + -0.7
2,021,222 + +0.2
2,021,223 - +0.0
2,021,223 - +0.5
2,021,223 - +0.4
2,021,223 - -0.8
2,021,310 - ABZR86_RS09090 0.21 -0.6
2,021,331 + ABZR86_RS09090 0.24 -1.6
2,021,331 + ABZR86_RS09090 0.24 -0.1
2,021,331 + ABZR86_RS09090 0.24 -0.2
2,021,342 + ABZR86_RS09090 0.25 +0.8
2,021,370 + ABZR86_RS09090 0.29 +0.1
2,021,474 + ABZR86_RS09090 0.44 +0.9
2,021,566 + ABZR86_RS09090 0.58 +0.2
2,021,713 + ABZR86_RS09090 0.79 +0.2
2,021,713 + ABZR86_RS09090 0.79 +1.0
2,021,714 - ABZR86_RS09090 0.79 -0.2
2,021,813 - -1.0
2,021,870 - -0.5
2,021,870 - +1.0
2,021,949 + +0.1
2,021,949 + -0.4
2,021,950 - -0.2
2,021,950 - +0.6

Or see this region's nucleotide sequence