Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09080

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09075 and ABZR86_RS09080 are separated by 5 nucleotidesABZR86_RS09080 and ABZR86_RS09085 are separated by 139 nucleotides ABZR86_RS09075: ABZR86_RS09075 - NrsF family protein, at 2,017,827 to 2,018,480 _RS09075 ABZR86_RS09080: ABZR86_RS09080 - sigma-70 family RNA polymerase sigma factor, at 2,018,486 to 2,019,142 _RS09080 ABZR86_RS09085: ABZR86_RS09085 - cytochrome c biogenesis protein DipZ, at 2,019,282 to 2,021,003 _RS09085 Position (kb) 2018 2019 2020Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2017.542 kb on + strandat 2017.543 kb on - strandat 2017.543 kb on - strandat 2017.543 kb on - strandat 2017.597 kb on + strandat 2017.597 kb on + strandat 2018.336 kb on - strand, within ABZR86_RS09075at 2018.503 kb on + strandat 2018.829 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.847 kb on + strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.848 kb on - strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.851 kb on + strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.852 kb on - strand, within ABZR86_RS09080at 2018.977 kb on - strand, within ABZR86_RS09080at 2019.096 kb on - strandat 2019.096 kb on - strandat 2019.104 kb on + strandat 2019.225 kb on + strandat 2019.225 kb on + strandat 2019.225 kb on + strandat 2019.226 kb on - strandat 2019.226 kb on - strandat 2019.250 kb on + strandat 2019.251 kb on - strandat 2019.289 kb on + strandat 2019.290 kb on - strandat 2019.303 kb on + strandat 2019.303 kb on + strandat 2019.304 kb on - strandat 2019.304 kb on - strandat 2019.304 kb on - strandat 2019.490 kb on - strand, within ABZR86_RS09085at 2019.490 kb on - strand, within ABZR86_RS09085at 2019.765 kb on + strand, within ABZR86_RS09085at 2019.765 kb on + strand, within ABZR86_RS09085at 2019.765 kb on + strand, within ABZR86_RS09085at 2019.766 kb on - strand, within ABZR86_RS09085

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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2,017,542 + -0.3
2,017,543 - -0.3
2,017,543 - -0.3
2,017,543 - -0.9
2,017,597 + +0.1
2,017,597 + -0.7
2,018,336 - ABZR86_RS09075 0.78 -2.0
2,018,503 + -0.8
2,018,829 + ABZR86_RS09080 0.52 -0.5
2,018,847 + ABZR86_RS09080 0.55 -0.7
2,018,847 + ABZR86_RS09080 0.55 -0.5
2,018,847 + ABZR86_RS09080 0.55 +0.8
2,018,847 + ABZR86_RS09080 0.55 -1.1
2,018,847 + ABZR86_RS09080 0.55 -0.5
2,018,847 + ABZR86_RS09080 0.55 -1.1
2,018,848 - ABZR86_RS09080 0.55 -2.4
2,018,848 - ABZR86_RS09080 0.55 -3.0
2,018,848 - ABZR86_RS09080 0.55 -1.6
2,018,848 - ABZR86_RS09080 0.55 -2.9
2,018,851 + ABZR86_RS09080 0.56 -0.0
2,018,851 + ABZR86_RS09080 0.56 -1.2
2,018,851 + ABZR86_RS09080 0.56 -1.9
2,018,851 + ABZR86_RS09080 0.56 -0.2
2,018,851 + ABZR86_RS09080 0.56 -0.4
2,018,851 + ABZR86_RS09080 0.56 -0.3
2,018,851 + ABZR86_RS09080 0.56 -1.2
2,018,852 - ABZR86_RS09080 0.56 -2.1
2,018,852 - ABZR86_RS09080 0.56 -1.7
2,018,852 - ABZR86_RS09080 0.56 -2.6
2,018,852 - ABZR86_RS09080 0.56 -3.1
2,018,852 - ABZR86_RS09080 0.56 -4.5
2,018,977 - ABZR86_RS09080 0.75 -1.5
2,019,096 - -0.0
2,019,096 - -1.6
2,019,104 + +0.9
2,019,225 + -1.0
2,019,225 + +0.8
2,019,225 + -0.4
2,019,226 - +0.8
2,019,226 - +0.7
2,019,250 + -0.3
2,019,251 - +0.6
2,019,289 + -1.3
2,019,290 - +0.4
2,019,303 + -1.1
2,019,303 + -1.3
2,019,304 - -0.6
2,019,304 - +0.3
2,019,304 - +0.8
2,019,490 - ABZR86_RS09085 0.12 -0.9
2,019,490 - ABZR86_RS09085 0.12 +0.6
2,019,765 + ABZR86_RS09085 0.28 -0.9
2,019,765 + ABZR86_RS09085 0.28 -1.6
2,019,765 + ABZR86_RS09085 0.28 -2.8
2,019,766 - ABZR86_RS09085 0.28 -0.8

Or see this region's nucleotide sequence