Experiment: Chlorite 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09075 and ABZR86_RS09080 are separated by 5 nucleotides ABZR86_RS09080 and ABZR86_RS09085 are separated by 139 nucleotides
ABZR86_RS09075: ABZR86_RS09075 - NrsF family protein, at 2,017,827 to 2,018,480
_RS09075
ABZR86_RS09080: ABZR86_RS09080 - sigma-70 family RNA polymerase sigma factor, at 2,018,486 to 2,019,142
_RS09080
ABZR86_RS09085: ABZR86_RS09085 - cytochrome c biogenesis protein DipZ, at 2,019,282 to 2,021,003
_RS09085
Position (kb)
2018
2019
2020 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2017.542 kb on + strand at 2017.543 kb on - strand at 2017.543 kb on - strand at 2017.543 kb on - strand at 2017.597 kb on + strand at 2017.597 kb on + strand at 2018.336 kb on - strand, within ABZR86_RS09075 at 2018.503 kb on + strand at 2018.829 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.977 kb on - strand, within ABZR86_RS09080 at 2019.096 kb on - strand at 2019.096 kb on - strand at 2019.104 kb on + strand at 2019.225 kb on + strand at 2019.225 kb on + strand at 2019.225 kb on + strand at 2019.226 kb on - strand at 2019.226 kb on - strand at 2019.250 kb on + strand at 2019.251 kb on - strand at 2019.289 kb on + strand at 2019.290 kb on - strand at 2019.303 kb on + strand at 2019.303 kb on + strand at 2019.304 kb on - strand at 2019.304 kb on - strand at 2019.304 kb on - strand at 2019.490 kb on - strand, within ABZR86_RS09085 at 2019.490 kb on - strand, within ABZR86_RS09085 at 2019.765 kb on + strand, within ABZR86_RS09085 at 2019.765 kb on + strand, within ABZR86_RS09085 at 2019.765 kb on + strand, within ABZR86_RS09085 at 2019.766 kb on - strand, within ABZR86_RS09085
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.32 mM remove 2,017,542 + -0.3 2,017,543 - -0.3 2,017,543 - -0.3 2,017,543 - -0.9 2,017,597 + +0.1 2,017,597 + -0.7 2,018,336 - ABZR86_RS09075 0.78 -2.0 2,018,503 + -0.8 2,018,829 + ABZR86_RS09080 0.52 -0.5 2,018,847 + ABZR86_RS09080 0.55 -0.7 2,018,847 + ABZR86_RS09080 0.55 -0.5 2,018,847 + ABZR86_RS09080 0.55 +0.8 2,018,847 + ABZR86_RS09080 0.55 -1.1 2,018,847 + ABZR86_RS09080 0.55 -0.5 2,018,847 + ABZR86_RS09080 0.55 -1.1 2,018,848 - ABZR86_RS09080 0.55 -2.4 2,018,848 - ABZR86_RS09080 0.55 -3.0 2,018,848 - ABZR86_RS09080 0.55 -1.6 2,018,848 - ABZR86_RS09080 0.55 -2.9 2,018,851 + ABZR86_RS09080 0.56 -0.0 2,018,851 + ABZR86_RS09080 0.56 -1.2 2,018,851 + ABZR86_RS09080 0.56 -1.9 2,018,851 + ABZR86_RS09080 0.56 -0.2 2,018,851 + ABZR86_RS09080 0.56 -0.4 2,018,851 + ABZR86_RS09080 0.56 -0.3 2,018,851 + ABZR86_RS09080 0.56 -1.2 2,018,852 - ABZR86_RS09080 0.56 -2.1 2,018,852 - ABZR86_RS09080 0.56 -1.7 2,018,852 - ABZR86_RS09080 0.56 -2.6 2,018,852 - ABZR86_RS09080 0.56 -3.1 2,018,852 - ABZR86_RS09080 0.56 -4.5 2,018,977 - ABZR86_RS09080 0.75 -1.5 2,019,096 - -0.0 2,019,096 - -1.6 2,019,104 + +0.9 2,019,225 + -1.0 2,019,225 + +0.8 2,019,225 + -0.4 2,019,226 - +0.8 2,019,226 - +0.7 2,019,250 + -0.3 2,019,251 - +0.6 2,019,289 + -1.3 2,019,290 - +0.4 2,019,303 + -1.1 2,019,303 + -1.3 2,019,304 - -0.6 2,019,304 - +0.3 2,019,304 - +0.8 2,019,490 - ABZR86_RS09085 0.12 -0.9 2,019,490 - ABZR86_RS09085 0.12 +0.6 2,019,765 + ABZR86_RS09085 0.28 -0.9 2,019,765 + ABZR86_RS09085 0.28 -1.6 2,019,765 + ABZR86_RS09085 0.28 -2.8 2,019,766 - ABZR86_RS09085 0.28 -0.8
Or see this region's nucleotide sequence