Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08430

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08425 and ABZR86_RS08430 are separated by 99 nucleotidesABZR86_RS08430 and ABZR86_RS08435 are separated by 2 nucleotides ABZR86_RS08425: ABZR86_RS08425 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 1,879,246 to 1,880,697 _RS08425 ABZR86_RS08430: ABZR86_RS08430 - 2-methylaconitate cis-trans isomerase PrpF, at 1,880,797 to 1,881,996 _RS08430 ABZR86_RS08435: ABZR86_RS08435 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 1,881,999 to 1,884,608 _RS08435 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -1 0 1 2at 1879.830 kb on - strand, within ABZR86_RS08425at 1879.862 kb on + strand, within ABZR86_RS08425at 1879.862 kb on + strand, within ABZR86_RS08425at 1879.862 kb on + strand, within ABZR86_RS08425at 1879.862 kb on + strand, within ABZR86_RS08425at 1879.862 kb on + strand, within ABZR86_RS08425at 1879.862 kb on + strand, within ABZR86_RS08425at 1879.862 kb on + strand, within ABZR86_RS08425at 1879.863 kb on - strand, within ABZR86_RS08425at 1879.863 kb on - strand, within ABZR86_RS08425at 1879.863 kb on - strand, within ABZR86_RS08425at 1879.916 kb on + strand, within ABZR86_RS08425at 1879.916 kb on + strand, within ABZR86_RS08425at 1879.917 kb on - strand, within ABZR86_RS08425at 1879.917 kb on - strand, within ABZR86_RS08425at 1879.919 kb on + strand, within ABZR86_RS08425at 1879.919 kb on + strand, within ABZR86_RS08425at 1879.919 kb on + strand, within ABZR86_RS08425at 1879.919 kb on + strand, within ABZR86_RS08425at 1880.220 kb on - strand, within ABZR86_RS08425at 1880.316 kb on - strand, within ABZR86_RS08425at 1880.316 kb on - strand, within ABZR86_RS08425at 1880.576 kb on + strandat 1880.576 kb on + strandat 1880.577 kb on - strandat 1880.577 kb on - strandat 1880.592 kb on - strandat 1880.592 kb on - strandat 1880.592 kb on - strandat 1880.592 kb on - strandat 1880.592 kb on - strandat 1880.627 kb on + strandat 1880.627 kb on + strandat 1880.627 kb on + strandat 1880.627 kb on + strandat 1880.628 kb on - strandat 1880.628 kb on - strandat 1880.628 kb on - strandat 1880.628 kb on - strandat 1880.637 kb on + strandat 1880.691 kb on + strandat 1881.024 kb on + strand, within ABZR86_RS08430at 1881.186 kb on + strand, within ABZR86_RS08430at 1881.186 kb on + strand, within ABZR86_RS08430at 1881.290 kb on + strand, within ABZR86_RS08430at 1881.726 kb on - strand, within ABZR86_RS08430at 1881.944 kb on + strandat 1881.945 kb on - strandat 1881.945 kb on - strandat 1882.063 kb on + strandat 1882.370 kb on - strand, within ABZR86_RS08435at 1882.414 kb on + strand, within ABZR86_RS08435at 1882.415 kb on - strand, within ABZR86_RS08435at 1882.415 kb on - strand, within ABZR86_RS08435at 1882.415 kb on - strand, within ABZR86_RS08435at 1882.415 kb on - strand, within ABZR86_RS08435at 1882.579 kb on + strand, within ABZR86_RS08435at 1882.621 kb on + strand, within ABZR86_RS08435at 1882.754 kb on - strand, within ABZR86_RS08435at 1882.771 kb on + strand, within ABZR86_RS08435at 1882.771 kb on + strand, within ABZR86_RS08435at 1882.771 kb on + strand, within ABZR86_RS08435at 1882.772 kb on - strand, within ABZR86_RS08435at 1882.849 kb on + strand, within ABZR86_RS08435at 1882.850 kb on - strand, within ABZR86_RS08435

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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1,879,830 - ABZR86_RS08425 0.40 +0.6
1,879,862 + ABZR86_RS08425 0.42 +0.8
1,879,862 + ABZR86_RS08425 0.42 -0.9
1,879,862 + ABZR86_RS08425 0.42 +1.2
1,879,862 + ABZR86_RS08425 0.42 +0.5
1,879,862 + ABZR86_RS08425 0.42 -0.5
1,879,862 + ABZR86_RS08425 0.42 +0.4
1,879,862 + ABZR86_RS08425 0.42 +0.5
1,879,863 - ABZR86_RS08425 0.42 +0.3
1,879,863 - ABZR86_RS08425 0.42 +0.3
1,879,863 - ABZR86_RS08425 0.42 +0.1
1,879,916 + ABZR86_RS08425 0.46 +0.1
1,879,916 + ABZR86_RS08425 0.46 +0.0
1,879,917 - ABZR86_RS08425 0.46 -0.4
1,879,917 - ABZR86_RS08425 0.46 -0.3
1,879,919 + ABZR86_RS08425 0.46 -0.3
1,879,919 + ABZR86_RS08425 0.46 +0.8
1,879,919 + ABZR86_RS08425 0.46 -0.6
1,879,919 + ABZR86_RS08425 0.46 +1.1
1,880,220 - ABZR86_RS08425 0.67 +0.3
1,880,316 - ABZR86_RS08425 0.74 -0.3
1,880,316 - ABZR86_RS08425 0.74 +0.1
1,880,576 + +0.0
1,880,576 + +0.7
1,880,577 - -1.3
1,880,577 - +0.8
1,880,592 - -0.9
1,880,592 - -0.0
1,880,592 - +0.1
1,880,592 - +0.1
1,880,592 - +1.2
1,880,627 + +0.7
1,880,627 + +0.3
1,880,627 + +1.1
1,880,627 + +0.6
1,880,628 - +0.4
1,880,628 - -0.1
1,880,628 - +0.3
1,880,628 - -0.3
1,880,637 + +0.8
1,880,691 + -0.1
1,881,024 + ABZR86_RS08430 0.19 +0.5
1,881,186 + ABZR86_RS08430 0.32 +0.1
1,881,186 + ABZR86_RS08430 0.32 +1.7
1,881,290 + ABZR86_RS08430 0.41 +1.9
1,881,726 - ABZR86_RS08430 0.77 +0.4
1,881,944 + +1.2
1,881,945 - +0.4
1,881,945 - -0.4
1,882,063 + -0.0
1,882,370 - ABZR86_RS08435 0.14 -0.2
1,882,414 + ABZR86_RS08435 0.16 +1.3
1,882,415 - ABZR86_RS08435 0.16 +1.5
1,882,415 - ABZR86_RS08435 0.16 +0.9
1,882,415 - ABZR86_RS08435 0.16 +2.1
1,882,415 - ABZR86_RS08435 0.16 +0.8
1,882,579 + ABZR86_RS08435 0.22 +0.9
1,882,621 + ABZR86_RS08435 0.24 +0.9
1,882,754 - ABZR86_RS08435 0.29 -0.2
1,882,771 + ABZR86_RS08435 0.30 +0.7
1,882,771 + ABZR86_RS08435 0.30 +1.6
1,882,771 + ABZR86_RS08435 0.30 +0.5
1,882,772 - ABZR86_RS08435 0.30 +0.7
1,882,849 + ABZR86_RS08435 0.33 +0.7
1,882,850 - ABZR86_RS08435 0.33 +0.1

Or see this region's nucleotide sequence