Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07920

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07910 and ABZR86_RS07915 are separated by 28 nucleotidesABZR86_RS07915 and ABZR86_RS07920 are separated by 118 nucleotidesABZR86_RS07920 and ABZR86_RS07925 are separated by 168 nucleotides ABZR86_RS07910: ABZR86_RS07910 - glutamate--tRNA ligase, at 1,757,292 to 1,758,692 _RS07910 ABZR86_RS07915: ABZR86_RS07915 - hypothetical protein, at 1,758,721 to 1,759,491 _RS07915 ABZR86_RS07920: ABZR86_RS07920 - DUF4399 domain-containing protein, at 1,759,610 to 1,760,044 _RS07920 ABZR86_RS07925: ABZR86_RS07925 - glycosyltransferase family 1 protein, at 1,760,213 to 1,761,373 _RS07925 Position (kb) 1759 1760 1761Strain fitness (log2 ratio) -1 0 1 2at 1758.874 kb on + strand, within ABZR86_RS07915at 1758.940 kb on + strand, within ABZR86_RS07915at 1758.940 kb on + strand, within ABZR86_RS07915at 1758.940 kb on + strand, within ABZR86_RS07915at 1758.940 kb on + strand, within ABZR86_RS07915at 1758.941 kb on - strand, within ABZR86_RS07915at 1758.941 kb on - strand, within ABZR86_RS07915at 1759.003 kb on + strand, within ABZR86_RS07915at 1759.003 kb on + strand, within ABZR86_RS07915at 1759.004 kb on - strand, within ABZR86_RS07915at 1759.004 kb on - strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.094 kb on + strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.095 kb on - strand, within ABZR86_RS07915at 1759.168 kb on + strand, within ABZR86_RS07915at 1759.226 kb on - strand, within ABZR86_RS07915at 1759.226 kb on - strand, within ABZR86_RS07915at 1759.285 kb on + strand, within ABZR86_RS07915at 1759.286 kb on - strand, within ABZR86_RS07915at 1759.312 kb on + strand, within ABZR86_RS07915at 1759.313 kb on - strand, within ABZR86_RS07915at 1759.313 kb on - strand, within ABZR86_RS07915at 1759.313 kb on - strand, within ABZR86_RS07915at 1759.313 kb on - strand, within ABZR86_RS07915at 1759.313 kb on - strand, within ABZR86_RS07915at 1759.477 kb on + strandat 1759.477 kb on + strandat 1759.477 kb on + strandat 1759.477 kb on + strandat 1759.477 kb on + strandat 1759.478 kb on - strandat 1759.500 kb on + strandat 1759.501 kb on - strandat 1759.501 kb on - strandat 1759.585 kb on + strandat 1759.585 kb on + strandat 1759.696 kb on + strand, within ABZR86_RS07920at 1759.696 kb on + strand, within ABZR86_RS07920at 1759.697 kb on - strand, within ABZR86_RS07920at 1759.718 kb on + strand, within ABZR86_RS07920at 1759.719 kb on - strand, within ABZR86_RS07920at 1759.935 kb on + strand, within ABZR86_RS07920at 1759.935 kb on + strand, within ABZR86_RS07920at 1759.936 kb on - strand, within ABZR86_RS07920at 1760.081 kb on + strandat 1760.081 kb on + strandat 1760.119 kb on + strandat 1760.123 kb on + strandat 1760.124 kb on - strandat 1760.124 kb on - strandat 1760.124 kb on - strandat 1760.135 kb on + strandat 1760.136 kb on - strandat 1760.187 kb on + strandat 1760.188 kb on - strandat 1760.188 kb on - strandat 1760.188 kb on - strandat 1760.188 kb on - strandat 1760.207 kb on - strandat 1760.240 kb on + strandat 1760.483 kb on + strand, within ABZR86_RS07925at 1760.483 kb on + strand, within ABZR86_RS07925at 1760.483 kb on + strand, within ABZR86_RS07925at 1760.483 kb on + strand, within ABZR86_RS07925at 1760.483 kb on + strand, within ABZR86_RS07925at 1760.484 kb on - strand, within ABZR86_RS07925at 1760.484 kb on - strand, within ABZR86_RS07925at 1760.484 kb on - strand, within ABZR86_RS07925at 1760.582 kb on + strand, within ABZR86_RS07925at 1760.582 kb on + strand, within ABZR86_RS07925at 1760.730 kb on + strand, within ABZR86_RS07925at 1760.731 kb on - strand, within ABZR86_RS07925at 1760.829 kb on - strand, within ABZR86_RS07925at 1760.829 kb on - strand, within ABZR86_RS07925at 1760.829 kb on - strand, within ABZR86_RS07925at 1760.915 kb on + strand, within ABZR86_RS07925at 1760.915 kb on + strand, within ABZR86_RS07925at 1760.916 kb on - strand, within ABZR86_RS07925at 1761.017 kb on + strand, within ABZR86_RS07925at 1761.034 kb on - strand, within ABZR86_RS07925at 1761.034 kb on - strand, within ABZR86_RS07925

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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1,758,874 + ABZR86_RS07915 0.20 -0.2
1,758,940 + ABZR86_RS07915 0.28 -0.1
1,758,940 + ABZR86_RS07915 0.28 +0.5
1,758,940 + ABZR86_RS07915 0.28 +0.1
1,758,940 + ABZR86_RS07915 0.28 +0.2
1,758,941 - ABZR86_RS07915 0.29 -0.2
1,758,941 - ABZR86_RS07915 0.29 -0.4
1,759,003 + ABZR86_RS07915 0.37 +0.2
1,759,003 + ABZR86_RS07915 0.37 -0.9
1,759,004 - ABZR86_RS07915 0.37 +0.3
1,759,004 - ABZR86_RS07915 0.37 +0.1
1,759,094 + ABZR86_RS07915 0.48 -0.1
1,759,094 + ABZR86_RS07915 0.48 +0.8
1,759,094 + ABZR86_RS07915 0.48 -0.4
1,759,094 + ABZR86_RS07915 0.48 +0.0
1,759,094 + ABZR86_RS07915 0.48 -0.2
1,759,094 + ABZR86_RS07915 0.48 -0.3
1,759,094 + ABZR86_RS07915 0.48 -0.2
1,759,094 + ABZR86_RS07915 0.48 +0.2
1,759,094 + ABZR86_RS07915 0.48 +0.8
1,759,094 + ABZR86_RS07915 0.48 -0.0
1,759,095 - ABZR86_RS07915 0.49 -0.5
1,759,095 - ABZR86_RS07915 0.49 +0.1
1,759,095 - ABZR86_RS07915 0.49 -0.5
1,759,095 - ABZR86_RS07915 0.49 -0.3
1,759,095 - ABZR86_RS07915 0.49 +1.3
1,759,095 - ABZR86_RS07915 0.49 -0.1
1,759,095 - ABZR86_RS07915 0.49 +0.6
1,759,095 - ABZR86_RS07915 0.49 -0.2
1,759,168 + ABZR86_RS07915 0.58 +2.1
1,759,226 - ABZR86_RS07915 0.65 -0.6
1,759,226 - ABZR86_RS07915 0.65 +0.5
1,759,285 + ABZR86_RS07915 0.73 +0.8
1,759,286 - ABZR86_RS07915 0.73 -0.5
1,759,312 + ABZR86_RS07915 0.77 -0.6
1,759,313 - ABZR86_RS07915 0.77 -0.6
1,759,313 - ABZR86_RS07915 0.77 +0.0
1,759,313 - ABZR86_RS07915 0.77 +0.3
1,759,313 - ABZR86_RS07915 0.77 +0.7
1,759,313 - ABZR86_RS07915 0.77 -0.5
1,759,477 + +0.3
1,759,477 + +0.1
1,759,477 + +1.2
1,759,477 + +1.2
1,759,477 + -0.1
1,759,478 - +0.2
1,759,500 + +0.0
1,759,501 - +0.5
1,759,501 - +0.4
1,759,585 + -0.1
1,759,585 + -0.0
1,759,696 + ABZR86_RS07920 0.20 -0.3
1,759,696 + ABZR86_RS07920 0.20 +1.6
1,759,697 - ABZR86_RS07920 0.20 -0.2
1,759,718 + ABZR86_RS07920 0.25 +0.5
1,759,719 - ABZR86_RS07920 0.25 -0.4
1,759,935 + ABZR86_RS07920 0.75 +0.3
1,759,935 + ABZR86_RS07920 0.75 -0.1
1,759,936 - ABZR86_RS07920 0.75 -0.6
1,760,081 + +0.5
1,760,081 + +0.1
1,760,119 + +0.7
1,760,123 + -0.6
1,760,124 - +0.1
1,760,124 - +0.5
1,760,124 - -0.8
1,760,135 + -0.1
1,760,136 - +0.4
1,760,187 + -0.4
1,760,188 - +0.2
1,760,188 - +0.5
1,760,188 - +0.8
1,760,188 - +0.1
1,760,207 - +0.7
1,760,240 + -0.8
1,760,483 + ABZR86_RS07925 0.23 +0.1
1,760,483 + ABZR86_RS07925 0.23 +0.4
1,760,483 + ABZR86_RS07925 0.23 -0.1
1,760,483 + ABZR86_RS07925 0.23 +1.6
1,760,483 + ABZR86_RS07925 0.23 -1.3
1,760,484 - ABZR86_RS07925 0.23 -0.8
1,760,484 - ABZR86_RS07925 0.23 -0.6
1,760,484 - ABZR86_RS07925 0.23 -0.1
1,760,582 + ABZR86_RS07925 0.32 -0.4
1,760,582 + ABZR86_RS07925 0.32 +1.4
1,760,730 + ABZR86_RS07925 0.45 -1.2
1,760,731 - ABZR86_RS07925 0.45 -0.0
1,760,829 - ABZR86_RS07925 0.53 +0.3
1,760,829 - ABZR86_RS07925 0.53 +0.7
1,760,829 - ABZR86_RS07925 0.53 -1.6
1,760,915 + ABZR86_RS07925 0.60 +0.7
1,760,915 + ABZR86_RS07925 0.60 -0.2
1,760,916 - ABZR86_RS07925 0.61 +0.7
1,761,017 + ABZR86_RS07925 0.69 -0.0
1,761,034 - ABZR86_RS07925 0.71 +0.0
1,761,034 - ABZR86_RS07925 0.71 -0.3

Or see this region's nucleotide sequence