Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06695

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06685 and ABZR86_RS06690 are separated by 71 nucleotidesABZR86_RS06690 and ABZR86_RS06695 are separated by 19 nucleotidesABZR86_RS06695 and ABZR86_RS06700 are separated by 165 nucleotidesABZR86_RS06700 and ABZR86_RS06705 are separated by 12 nucleotides ABZR86_RS06685: ABZR86_RS06685 - acireductone dioxygenase, at 1,473,578 to 1,474,147 _RS06685 ABZR86_RS06690: ABZR86_RS06690 - acireductone synthase, at 1,474,219 to 1,474,905 _RS06690 ABZR86_RS06695: ABZR86_RS06695 - C13 family peptidase, at 1,474,925 to 1,475,959 _RS06695 ABZR86_RS06700: ABZR86_RS06700 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,476,125 to 1,476,754 _RS06700 ABZR86_RS06705: ABZR86_RS06705 - imidazole glycerol phosphate synthase subunit HisF, at 1,476,767 to 1,477,537 _RS06705 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1473.944 kb on + strand, within ABZR86_RS06685at 1473.945 kb on - strand, within ABZR86_RS06685at 1473.945 kb on - strand, within ABZR86_RS06685at 1474.026 kb on - strand, within ABZR86_RS06685at 1474.588 kb on + strand, within ABZR86_RS06690at 1474.588 kb on + strand, within ABZR86_RS06690at 1474.588 kb on + strand, within ABZR86_RS06690at 1474.589 kb on - strand, within ABZR86_RS06690at 1474.594 kb on + strand, within ABZR86_RS06690at 1474.594 kb on + strand, within ABZR86_RS06690at 1474.595 kb on - strand, within ABZR86_RS06690at 1474.595 kb on - strand, within ABZR86_RS06690at 1474.675 kb on + strand, within ABZR86_RS06690at 1474.876 kb on + strandat 1474.877 kb on - strandat 1474.878 kb on + strandat 1474.916 kb on + strandat 1475.016 kb on + strandat 1475.017 kb on - strandat 1475.017 kb on - strandat 1475.017 kb on - strandat 1475.017 kb on - strandat 1475.159 kb on + strand, within ABZR86_RS06695at 1475.211 kb on + strand, within ABZR86_RS06695at 1475.212 kb on - strand, within ABZR86_RS06695at 1475.231 kb on + strand, within ABZR86_RS06695at 1475.231 kb on + strand, within ABZR86_RS06695at 1475.268 kb on + strand, within ABZR86_RS06695at 1475.269 kb on - strand, within ABZR86_RS06695at 1475.269 kb on - strand, within ABZR86_RS06695at 1475.289 kb on - strand, within ABZR86_RS06695at 1475.459 kb on + strand, within ABZR86_RS06695at 1475.460 kb on - strand, within ABZR86_RS06695at 1475.604 kb on - strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1476.071 kb on + strandat 1476.102 kb on + strandat 1476.123 kb on + strandat 1476.124 kb on - strandat 1476.172 kb on + strandat 1476.343 kb on - strand, within ABZR86_RS06700at 1476.343 kb on - strand, within ABZR86_RS06700at 1476.343 kb on - strand, within ABZR86_RS06700at 1476.644 kb on - strand, within ABZR86_RS06700at 1476.645 kb on + strand, within ABZR86_RS06700at 1476.645 kb on + strand, within ABZR86_RS06700at 1476.646 kb on - strand, within ABZR86_RS06700at 1476.801 kb on + strandat 1476.801 kb on + strandat 1476.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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1,473,944 + ABZR86_RS06685 0.64 -0.2
1,473,945 - ABZR86_RS06685 0.64 -1.7
1,473,945 - ABZR86_RS06685 0.64 -1.6
1,474,026 - ABZR86_RS06685 0.79 -0.4
1,474,588 + ABZR86_RS06690 0.54 -1.0
1,474,588 + ABZR86_RS06690 0.54 -2.3
1,474,588 + ABZR86_RS06690 0.54 -2.3
1,474,589 - ABZR86_RS06690 0.54 -1.5
1,474,594 + ABZR86_RS06690 0.55 -2.6
1,474,594 + ABZR86_RS06690 0.55 -0.5
1,474,595 - ABZR86_RS06690 0.55 -3.2
1,474,595 - ABZR86_RS06690 0.55 -2.1
1,474,675 + ABZR86_RS06690 0.66 -1.6
1,474,876 + -1.0
1,474,877 - -0.3
1,474,878 + -0.9
1,474,916 + +0.2
1,475,016 + +0.4
1,475,017 - +0.4
1,475,017 - -0.2
1,475,017 - -0.1
1,475,017 - +0.9
1,475,159 + ABZR86_RS06695 0.23 -0.5
1,475,211 + ABZR86_RS06695 0.28 +0.3
1,475,212 - ABZR86_RS06695 0.28 +0.6
1,475,231 + ABZR86_RS06695 0.30 -0.1
1,475,231 + ABZR86_RS06695 0.30 -0.4
1,475,268 + ABZR86_RS06695 0.33 +1.9
1,475,269 - ABZR86_RS06695 0.33 -1.1
1,475,269 - ABZR86_RS06695 0.33 +0.0
1,475,289 - ABZR86_RS06695 0.35 -0.3
1,475,459 + ABZR86_RS06695 0.52 -0.9
1,475,460 - ABZR86_RS06695 0.52 +0.2
1,475,604 - ABZR86_RS06695 0.66 -0.5
1,475,711 + ABZR86_RS06695 0.76 -0.1
1,475,711 + ABZR86_RS06695 0.76 +0.1
1,475,711 + ABZR86_RS06695 0.76 -0.5
1,475,711 + ABZR86_RS06695 0.76 +0.1
1,475,712 - ABZR86_RS06695 0.76 +0.2
1,475,712 - ABZR86_RS06695 0.76 -0.6
1,475,712 - ABZR86_RS06695 0.76 +0.1
1,475,712 - ABZR86_RS06695 0.76 -0.3
1,475,712 - ABZR86_RS06695 0.76 -1.3
1,476,071 + +1.4
1,476,102 + -0.1
1,476,123 + +0.8
1,476,124 - +0.5
1,476,172 + +0.1
1,476,343 - ABZR86_RS06700 0.35 +0.5
1,476,343 - ABZR86_RS06700 0.35 -0.2
1,476,343 - ABZR86_RS06700 0.35 -0.6
1,476,644 - ABZR86_RS06700 0.82 +0.5
1,476,645 + ABZR86_RS06700 0.83 +0.5
1,476,645 + ABZR86_RS06700 0.83 +0.5
1,476,646 - ABZR86_RS06700 0.83 -2.3
1,476,801 + -0.0
1,476,801 + -0.5
1,476,802 - +0.0

Or see this region's nucleotide sequence