Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05460

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05455 and ABZR86_RS05460 are separated by 67 nucleotidesABZR86_RS05460 and ABZR86_RS05465 are separated by 236 nucleotidesABZR86_RS05465 and ABZR86_RS05470 are separated by 74 nucleotides ABZR86_RS05455: ABZR86_RS05455 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 1,228,491 to 1,229,627 _RS05455 ABZR86_RS05460: ABZR86_RS05460 - nucleoside-diphosphate kinase, at 1,229,695 to 1,230,120 _RS05460 ABZR86_RS05465: ABZR86_RS05465 - TetR/AcrR family transcriptional regulator, at 1,230,357 to 1,230,974 _RS05465 ABZR86_RS05470: ABZR86_RS05470 - 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein, at 1,231,049 to 1,233,445 _RS05470 Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -1 0 1 2at 1228.814 kb on - strand, within ABZR86_RS05455at 1228.814 kb on - strand, within ABZR86_RS05455at 1228.814 kb on - strand, within ABZR86_RS05455at 1228.814 kb on - strand, within ABZR86_RS05455at 1228.814 kb on - strand, within ABZR86_RS05455at 1228.814 kb on - strand, within ABZR86_RS05455at 1229.167 kb on + strand, within ABZR86_RS05455at 1229.168 kb on - strand, within ABZR86_RS05455at 1229.168 kb on - strand, within ABZR86_RS05455at 1229.168 kb on - strand, within ABZR86_RS05455at 1229.318 kb on - strand, within ABZR86_RS05455at 1229.318 kb on - strand, within ABZR86_RS05455at 1229.318 kb on - strand, within ABZR86_RS05455at 1229.318 kb on - strand, within ABZR86_RS05455at 1229.318 kb on - strand, within ABZR86_RS05455at 1229.416 kb on + strand, within ABZR86_RS05455at 1229.417 kb on - strand, within ABZR86_RS05455at 1229.417 kb on - strand, within ABZR86_RS05455at 1229.417 kb on - strand, within ABZR86_RS05455at 1229.495 kb on - strand, within ABZR86_RS05455at 1229.495 kb on - strand, within ABZR86_RS05455at 1229.495 kb on - strand, within ABZR86_RS05455at 1229.495 kb on - strand, within ABZR86_RS05455at 1229.696 kb on + strandat 1229.697 kb on - strandat 1230.147 kb on - strandat 1230.147 kb on - strandat 1230.147 kb on - strandat 1230.171 kb on - strandat 1230.182 kb on + strandat 1230.183 kb on - strandat 1230.183 kb on - strandat 1230.213 kb on - strandat 1230.237 kb on + strandat 1230.245 kb on - strandat 1230.245 kb on - strandat 1230.245 kb on - strandat 1230.245 kb on - strandat 1230.245 kb on - strandat 1230.269 kb on + strandat 1230.269 kb on + strandat 1230.304 kb on + strandat 1230.335 kb on + strandat 1230.492 kb on + strand, within ABZR86_RS05465at 1230.492 kb on + strand, within ABZR86_RS05465at 1230.492 kb on + strand, within ABZR86_RS05465at 1230.492 kb on + strand, within ABZR86_RS05465at 1230.492 kb on + strand, within ABZR86_RS05465at 1230.493 kb on - strand, within ABZR86_RS05465at 1230.493 kb on - strand, within ABZR86_RS05465at 1230.493 kb on - strand, within ABZR86_RS05465at 1230.493 kb on - strand, within ABZR86_RS05465at 1230.493 kb on - strand, within ABZR86_RS05465at 1230.493 kb on - strand, within ABZR86_RS05465at 1230.747 kb on + strand, within ABZR86_RS05465at 1230.747 kb on + strand, within ABZR86_RS05465at 1230.748 kb on - strand, within ABZR86_RS05465at 1230.748 kb on - strand, within ABZR86_RS05465at 1230.748 kb on - strand, within ABZR86_RS05465at 1230.748 kb on - strand, within ABZR86_RS05465at 1230.819 kb on + strand, within ABZR86_RS05465at 1230.819 kb on + strand, within ABZR86_RS05465at 1230.819 kb on + strand, within ABZR86_RS05465at 1230.820 kb on - strand, within ABZR86_RS05465at 1230.820 kb on - strand, within ABZR86_RS05465at 1230.820 kb on - strand, within ABZR86_RS05465at 1230.972 kb on + strandat 1231.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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1,228,814 - ABZR86_RS05455 0.28 +0.8
1,228,814 - ABZR86_RS05455 0.28 +0.7
1,228,814 - ABZR86_RS05455 0.28 +1.2
1,228,814 - ABZR86_RS05455 0.28 +1.5
1,228,814 - ABZR86_RS05455 0.28 +2.1
1,228,814 - ABZR86_RS05455 0.28 +1.2
1,229,167 + ABZR86_RS05455 0.59 +0.0
1,229,168 - ABZR86_RS05455 0.60 +0.8
1,229,168 - ABZR86_RS05455 0.60 +0.8
1,229,168 - ABZR86_RS05455 0.60 +1.8
1,229,318 - ABZR86_RS05455 0.73 +1.4
1,229,318 - ABZR86_RS05455 0.73 +0.9
1,229,318 - ABZR86_RS05455 0.73 +1.0
1,229,318 - ABZR86_RS05455 0.73 +1.2
1,229,318 - ABZR86_RS05455 0.73 +1.6
1,229,416 + ABZR86_RS05455 0.81 -0.3
1,229,417 - ABZR86_RS05455 0.81 -0.1
1,229,417 - ABZR86_RS05455 0.81 +1.1
1,229,417 - ABZR86_RS05455 0.81 +0.6
1,229,495 - ABZR86_RS05455 0.88 +0.7
1,229,495 - ABZR86_RS05455 0.88 -0.9
1,229,495 - ABZR86_RS05455 0.88 +0.6
1,229,495 - ABZR86_RS05455 0.88 +1.1
1,229,696 + +0.4
1,229,697 - -0.2
1,230,147 - -0.0
1,230,147 - +0.1
1,230,147 - -1.0
1,230,171 - +0.2
1,230,182 + -0.6
1,230,183 - -1.2
1,230,183 - +0.8
1,230,213 - -0.1
1,230,237 + +0.0
1,230,245 - -0.8
1,230,245 - -0.7
1,230,245 - -1.1
1,230,245 - +0.5
1,230,245 - -1.0
1,230,269 + +0.7
1,230,269 + +0.7
1,230,304 + +0.2
1,230,335 + -1.1
1,230,492 + ABZR86_RS05465 0.22 +0.2
1,230,492 + ABZR86_RS05465 0.22 +0.5
1,230,492 + ABZR86_RS05465 0.22 -0.1
1,230,492 + ABZR86_RS05465 0.22 +0.4
1,230,492 + ABZR86_RS05465 0.22 -0.3
1,230,493 - ABZR86_RS05465 0.22 -0.0
1,230,493 - ABZR86_RS05465 0.22 -0.6
1,230,493 - ABZR86_RS05465 0.22 +0.0
1,230,493 - ABZR86_RS05465 0.22 -0.2
1,230,493 - ABZR86_RS05465 0.22 -0.6
1,230,493 - ABZR86_RS05465 0.22 -0.5
1,230,747 + ABZR86_RS05465 0.63 -0.0
1,230,747 + ABZR86_RS05465 0.63 +0.3
1,230,748 - ABZR86_RS05465 0.63 +0.6
1,230,748 - ABZR86_RS05465 0.63 +0.2
1,230,748 - ABZR86_RS05465 0.63 -0.9
1,230,748 - ABZR86_RS05465 0.63 -0.2
1,230,819 + ABZR86_RS05465 0.75 -0.1
1,230,819 + ABZR86_RS05465 0.75 +0.4
1,230,819 + ABZR86_RS05465 0.75 +0.3
1,230,820 - ABZR86_RS05465 0.75 +0.5
1,230,820 - ABZR86_RS05465 0.75 +0.4
1,230,820 - ABZR86_RS05465 0.75 -0.6
1,230,972 + +0.4
1,231,034 - -0.7

Or see this region's nucleotide sequence