Experiment: Chlorite 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05345 and ABZR86_RS05350 are separated by 166 nucleotides ABZR86_RS05350 and ABZR86_RS05355 are separated by 19 nucleotides ABZR86_RS05355 and ABZR86_RS05360 are separated by 149 nucleotides
ABZR86_RS05345: ABZR86_RS05345 - NAD-dependent protein deacetylase, at 1,201,424 to 1,202,266
_RS05345
ABZR86_RS05350: ABZR86_RS05350 - CHAD domain-containing protein, at 1,202,433 to 1,203,344
_RS05350
ABZR86_RS05355: ABZR86_RS05355 - tRNA adenosine(34) deaminase TadA, at 1,203,364 to 1,203,855
_RS05355
ABZR86_RS05360: ABZR86_RS05360 - AlpA family transcriptional regulator, at 1,204,005 to 1,204,529
_RS05360
Position (kb)
1202
1203
1204 Strain fitness (log2 ratio)
-1
0
1
2 at 1201.601 kb on + strand, within ABZR86_RS05345 at 1201.601 kb on + strand, within ABZR86_RS05345 at 1201.601 kb on + strand, within ABZR86_RS05345 at 1201.601 kb on + strand, within ABZR86_RS05345 at 1201.601 kb on + strand, within ABZR86_RS05345 at 1201.602 kb on - strand, within ABZR86_RS05345 at 1201.602 kb on - strand, within ABZR86_RS05345 at 1201.602 kb on - strand, within ABZR86_RS05345 at 1201.602 kb on - strand, within ABZR86_RS05345 at 1201.602 kb on - strand, within ABZR86_RS05345 at 1201.737 kb on + strand, within ABZR86_RS05345 at 1201.737 kb on + strand, within ABZR86_RS05345 at 1201.737 kb on + strand, within ABZR86_RS05345 at 1201.737 kb on + strand, within ABZR86_RS05345 at 1201.737 kb on + strand, within ABZR86_RS05345 at 1201.738 kb on - strand, within ABZR86_RS05345 at 1201.738 kb on - strand, within ABZR86_RS05345 at 1201.920 kb on + strand, within ABZR86_RS05345 at 1201.920 kb on + strand, within ABZR86_RS05345 at 1201.920 kb on + strand, within ABZR86_RS05345 at 1201.920 kb on + strand, within ABZR86_RS05345 at 1201.921 kb on - strand, within ABZR86_RS05345 at 1201.921 kb on - strand, within ABZR86_RS05345 at 1201.921 kb on - strand, within ABZR86_RS05345 at 1201.921 kb on - strand, within ABZR86_RS05345 at 1202.185 kb on + strand at 1202.186 kb on - strand at 1202.258 kb on - strand at 1202.295 kb on - strand at 1202.295 kb on - strand at 1202.295 kb on - strand at 1202.295 kb on - strand at 1202.302 kb on + strand at 1202.302 kb on + strand at 1202.532 kb on + strand, within ABZR86_RS05350 at 1202.532 kb on + strand, within ABZR86_RS05350 at 1202.586 kb on + strand, within ABZR86_RS05350 at 1202.586 kb on + strand, within ABZR86_RS05350 at 1202.586 kb on + strand, within ABZR86_RS05350 at 1202.586 kb on + strand, within ABZR86_RS05350 at 1202.717 kb on + strand, within ABZR86_RS05350 at 1202.717 kb on + strand, within ABZR86_RS05350 at 1202.717 kb on + strand, within ABZR86_RS05350 at 1202.718 kb on - strand, within ABZR86_RS05350 at 1202.718 kb on - strand, within ABZR86_RS05350 at 1202.718 kb on - strand, within ABZR86_RS05350 at 1202.718 kb on - strand, within ABZR86_RS05350 at 1202.718 kb on - strand, within ABZR86_RS05350 at 1203.075 kb on + strand, within ABZR86_RS05350 at 1203.076 kb on - strand, within ABZR86_RS05350 at 1203.076 kb on - strand, within ABZR86_RS05350 at 1203.196 kb on + strand, within ABZR86_RS05350 at 1203.196 kb on + strand, within ABZR86_RS05350 at 1203.197 kb on - strand, within ABZR86_RS05350 at 1203.197 kb on - strand, within ABZR86_RS05350 at 1203.197 kb on - strand, within ABZR86_RS05350 at 1203.361 kb on + strand at 1203.879 kb on - strand at 1203.879 kb on - strand at 1203.879 kb on - strand at 1203.890 kb on + strand at 1203.890 kb on + strand at 1203.890 kb on + strand at 1203.891 kb on - strand at 1204.123 kb on + strand, within ABZR86_RS05360 at 1204.124 kb on - strand, within ABZR86_RS05360 at 1204.124 kb on - strand, within ABZR86_RS05360 at 1204.124 kb on - strand, within ABZR86_RS05360 at 1204.124 kb on - strand, within ABZR86_RS05360
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.32 mM remove 1,201,601 + ABZR86_RS05345 0.21 +0.2 1,201,601 + ABZR86_RS05345 0.21 -0.2 1,201,601 + ABZR86_RS05345 0.21 +1.2 1,201,601 + ABZR86_RS05345 0.21 +0.2 1,201,601 + ABZR86_RS05345 0.21 +0.4 1,201,602 - ABZR86_RS05345 0.21 -0.5 1,201,602 - ABZR86_RS05345 0.21 +0.7 1,201,602 - ABZR86_RS05345 0.21 +0.4 1,201,602 - ABZR86_RS05345 0.21 -0.4 1,201,602 - ABZR86_RS05345 0.21 -0.2 1,201,737 + ABZR86_RS05345 0.37 +0.6 1,201,737 + ABZR86_RS05345 0.37 +0.7 1,201,737 + ABZR86_RS05345 0.37 +0.4 1,201,737 + ABZR86_RS05345 0.37 +0.1 1,201,737 + ABZR86_RS05345 0.37 +0.2 1,201,738 - ABZR86_RS05345 0.37 +0.6 1,201,738 - ABZR86_RS05345 0.37 -1.1 1,201,920 + ABZR86_RS05345 0.59 -0.1 1,201,920 + ABZR86_RS05345 0.59 -0.0 1,201,920 + ABZR86_RS05345 0.59 -0.3 1,201,920 + ABZR86_RS05345 0.59 +1.0 1,201,921 - ABZR86_RS05345 0.59 +0.2 1,201,921 - ABZR86_RS05345 0.59 -0.5 1,201,921 - ABZR86_RS05345 0.59 +0.3 1,201,921 - ABZR86_RS05345 0.59 -0.1 1,202,185 + +0.4 1,202,186 - -0.4 1,202,258 - +0.3 1,202,295 - -0.0 1,202,295 - +0.2 1,202,295 - +0.3 1,202,295 - -0.2 1,202,302 + -0.5 1,202,302 + +0.7 1,202,532 + ABZR86_RS05350 0.11 +0.1 1,202,532 + ABZR86_RS05350 0.11 +0.3 1,202,586 + ABZR86_RS05350 0.17 +0.3 1,202,586 + ABZR86_RS05350 0.17 +1.0 1,202,586 + ABZR86_RS05350 0.17 +0.3 1,202,586 + ABZR86_RS05350 0.17 -1.1 1,202,717 + ABZR86_RS05350 0.31 -1.3 1,202,717 + ABZR86_RS05350 0.31 -1.2 1,202,717 + ABZR86_RS05350 0.31 -1.2 1,202,718 - ABZR86_RS05350 0.31 +0.8 1,202,718 - ABZR86_RS05350 0.31 -0.5 1,202,718 - ABZR86_RS05350 0.31 -0.2 1,202,718 - ABZR86_RS05350 0.31 +0.3 1,202,718 - ABZR86_RS05350 0.31 -0.8 1,203,075 + ABZR86_RS05350 0.70 +0.9 1,203,076 - ABZR86_RS05350 0.71 +0.2 1,203,076 - ABZR86_RS05350 0.71 -0.4 1,203,196 + ABZR86_RS05350 0.84 -0.4 1,203,196 + ABZR86_RS05350 0.84 -0.8 1,203,197 - ABZR86_RS05350 0.84 +0.8 1,203,197 - ABZR86_RS05350 0.84 +0.1 1,203,197 - ABZR86_RS05350 0.84 +0.2 1,203,361 + +0.2 1,203,879 - -1.0 1,203,879 - -0.4 1,203,879 - +0.2 1,203,890 + -0.4 1,203,890 + +1.8 1,203,890 + +0.7 1,203,891 - +0.7 1,204,123 + ABZR86_RS05360 0.22 +0.3 1,204,124 - ABZR86_RS05360 0.23 +0.7 1,204,124 - ABZR86_RS05360 0.23 -0.2 1,204,124 - ABZR86_RS05360 0.23 -0.3 1,204,124 - ABZR86_RS05360 0.23 -0.6
Or see this region's nucleotide sequence