Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01950

Experiment: Chlorite 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01940 and ABZR86_RS01945 are separated by 22 nucleotidesABZR86_RS01945 and ABZR86_RS01950 are separated by 13 nucleotidesABZR86_RS01950 and ABZR86_RS01955 are separated by 165 nucleotides ABZR86_RS01940: ABZR86_RS01940 - triose-phosphate isomerase, at 421,108 to 421,857 _RS01940 ABZR86_RS01945: ABZR86_RS01945 - preprotein translocase subunit SecG, at 421,880 to 422,335 _RS01945 ABZR86_RS01950: ABZR86_RS01950 - tRNA-Leu, at 422,349 to 422,433 _RS01950 ABZR86_RS01955: ABZR86_RS01955 - integrase arm-type DNA-binding domain-containing protein, at 422,599 to 423,900 _RS01955 Position (kb) 422 423Strain fitness (log2 ratio) -2 -1 0 1 2 3at 422.096 kb on + strand, within ABZR86_RS01945at 422.096 kb on + strand, within ABZR86_RS01945at 422.097 kb on - strand, within ABZR86_RS01945at 422.097 kb on - strand, within ABZR86_RS01945at 422.097 kb on - strand, within ABZR86_RS01945at 422.097 kb on - strand, within ABZR86_RS01945at 422.097 kb on - strand, within ABZR86_RS01945at 422.333 kb on + strandat 422.333 kb on + strandat 422.333 kb on + strandat 422.333 kb on + strandat 422.333 kb on + strandat 422.486 kb on + strandat 422.599 kb on - strandat 422.609 kb on + strandat 422.609 kb on + strandat 422.610 kb on - strandat 422.622 kb on + strandat 422.623 kb on - strandat 422.665 kb on + strandat 422.665 kb on + strandat 422.665 kb on + strandat 422.697 kb on - strandat 422.697 kb on - strandat 422.718 kb on + strandat 422.719 kb on - strandat 422.719 kb on - strandat 422.831 kb on + strand, within ABZR86_RS01955at 422.831 kb on + strand, within ABZR86_RS01955at 422.832 kb on - strand, within ABZR86_RS01955at 422.832 kb on - strand, within ABZR86_RS01955at 422.859 kb on + strand, within ABZR86_RS01955at 422.859 kb on + strand, within ABZR86_RS01955at 422.859 kb on + strand, within ABZR86_RS01955at 422.860 kb on - strand, within ABZR86_RS01955at 422.860 kb on - strand, within ABZR86_RS01955at 422.860 kb on - strand, within ABZR86_RS01955at 422.860 kb on - strand, within ABZR86_RS01955at 423.020 kb on - strand, within ABZR86_RS01955at 423.020 kb on - strand, within ABZR86_RS01955at 423.020 kb on - strand, within ABZR86_RS01955at 423.049 kb on + strand, within ABZR86_RS01955at 423.049 kb on + strand, within ABZR86_RS01955at 423.049 kb on + strand, within ABZR86_RS01955at 423.049 kb on + strand, within ABZR86_RS01955at 423.050 kb on - strand, within ABZR86_RS01955at 423.050 kb on - strand, within ABZR86_RS01955at 423.050 kb on - strand, within ABZR86_RS01955at 423.050 kb on - strand, within ABZR86_RS01955at 423.050 kb on - strand, within ABZR86_RS01955at 423.050 kb on - strand, within ABZR86_RS01955at 423.050 kb on - strand, within ABZR86_RS01955at 423.053 kb on + strand, within ABZR86_RS01955at 423.053 kb on + strand, within ABZR86_RS01955at 423.053 kb on + strand, within ABZR86_RS01955at 423.054 kb on - strand, within ABZR86_RS01955at 423.054 kb on - strand, within ABZR86_RS01955at 423.054 kb on - strand, within ABZR86_RS01955at 423.054 kb on - strand, within ABZR86_RS01955at 423.166 kb on + strand, within ABZR86_RS01955at 423.166 kb on + strand, within ABZR86_RS01955at 423.166 kb on + strand, within ABZR86_RS01955at 423.166 kb on + strand, within ABZR86_RS01955at 423.166 kb on + strand, within ABZR86_RS01955at 423.167 kb on - strand, within ABZR86_RS01955at 423.167 kb on - strand, within ABZR86_RS01955at 423.167 kb on - strand, within ABZR86_RS01955at 423.167 kb on - strand, within ABZR86_RS01955at 423.167 kb on - strand, within ABZR86_RS01955at 423.210 kb on + strand, within ABZR86_RS01955at 423.210 kb on + strand, within ABZR86_RS01955at 423.210 kb on + strand, within ABZR86_RS01955at 423.211 kb on - strand, within ABZR86_RS01955at 423.267 kb on + strand, within ABZR86_RS01955at 423.268 kb on - strand, within ABZR86_RS01955at 423.268 kb on - strand, within ABZR86_RS01955at 423.322 kb on + strand, within ABZR86_RS01955at 423.322 kb on + strand, within ABZR86_RS01955at 423.322 kb on + strand, within ABZR86_RS01955at 423.322 kb on + strand, within ABZR86_RS01955at 423.322 kb on + strand, within ABZR86_RS01955at 423.323 kb on - strand, within ABZR86_RS01955at 423.323 kb on - strand, within ABZR86_RS01955at 423.323 kb on - strand, within ABZR86_RS01955at 423.323 kb on - strand, within ABZR86_RS01955at 423.345 kb on - strand, within ABZR86_RS01955at 423.419 kb on + strand, within ABZR86_RS01955at 423.419 kb on + strand, within ABZR86_RS01955at 423.419 kb on + strand, within ABZR86_RS01955at 423.419 kb on + strand, within ABZR86_RS01955at 423.419 kb on + strand, within ABZR86_RS01955at 423.419 kb on + strand, within ABZR86_RS01955at 423.420 kb on - strand, within ABZR86_RS01955at 423.420 kb on - strand, within ABZR86_RS01955at 423.420 kb on - strand, within ABZR86_RS01955at 423.420 kb on - strand, within ABZR86_RS01955at 423.420 kb on - strand, within ABZR86_RS01955at 423.420 kb on - strand, within ABZR86_RS01955

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.32 mM
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422,096 + ABZR86_RS01945 0.47 +2.1
422,096 + ABZR86_RS01945 0.47 +3.1
422,097 - ABZR86_RS01945 0.48 +2.2
422,097 - ABZR86_RS01945 0.48 -0.9
422,097 - ABZR86_RS01945 0.48 +0.3
422,097 - ABZR86_RS01945 0.48 +0.8
422,097 - ABZR86_RS01945 0.48 +2.0
422,333 + -0.1
422,333 + -0.5
422,333 + +0.4
422,333 + +0.0
422,333 + -1.3
422,486 + -0.2
422,599 - +0.5
422,609 + +0.3
422,609 + +0.3
422,610 - +0.1
422,622 + -0.3
422,623 - +0.4
422,665 + +0.8
422,665 + +2.0
422,665 + +0.7
422,697 - -1.3
422,697 - -0.5
422,718 + +0.1
422,719 - +1.4
422,719 - -1.0
422,831 + ABZR86_RS01955 0.18 +0.4
422,831 + ABZR86_RS01955 0.18 +0.9
422,832 - ABZR86_RS01955 0.18 -0.5
422,832 - ABZR86_RS01955 0.18 +0.4
422,859 + ABZR86_RS01955 0.20 -0.3
422,859 + ABZR86_RS01955 0.20 +0.3
422,859 + ABZR86_RS01955 0.20 -0.2
422,860 - ABZR86_RS01955 0.20 +0.5
422,860 - ABZR86_RS01955 0.20 +0.2
422,860 - ABZR86_RS01955 0.20 -0.1
422,860 - ABZR86_RS01955 0.20 -0.3
423,020 - ABZR86_RS01955 0.32 +0.4
423,020 - ABZR86_RS01955 0.32 -0.5
423,020 - ABZR86_RS01955 0.32 +0.2
423,049 + ABZR86_RS01955 0.35 +0.2
423,049 + ABZR86_RS01955 0.35 +0.1
423,049 + ABZR86_RS01955 0.35 +0.6
423,049 + ABZR86_RS01955 0.35 +0.9
423,050 - ABZR86_RS01955 0.35 -0.3
423,050 - ABZR86_RS01955 0.35 -0.5
423,050 - ABZR86_RS01955 0.35 -0.1
423,050 - ABZR86_RS01955 0.35 -0.1
423,050 - ABZR86_RS01955 0.35 +0.5
423,050 - ABZR86_RS01955 0.35 -0.5
423,050 - ABZR86_RS01955 0.35 +0.4
423,053 + ABZR86_RS01955 0.35 +0.1
423,053 + ABZR86_RS01955 0.35 +0.1
423,053 + ABZR86_RS01955 0.35 +0.5
423,054 - ABZR86_RS01955 0.35 -1.3
423,054 - ABZR86_RS01955 0.35 +1.0
423,054 - ABZR86_RS01955 0.35 -0.3
423,054 - ABZR86_RS01955 0.35 +0.4
423,166 + ABZR86_RS01955 0.44 -0.1
423,166 + ABZR86_RS01955 0.44 +1.2
423,166 + ABZR86_RS01955 0.44 +0.1
423,166 + ABZR86_RS01955 0.44 +0.3
423,166 + ABZR86_RS01955 0.44 +0.6
423,167 - ABZR86_RS01955 0.44 -0.1
423,167 - ABZR86_RS01955 0.44 +0.6
423,167 - ABZR86_RS01955 0.44 -0.6
423,167 - ABZR86_RS01955 0.44 +0.4
423,167 - ABZR86_RS01955 0.44 +0.1
423,210 + ABZR86_RS01955 0.47 -0.9
423,210 + ABZR86_RS01955 0.47 +0.2
423,210 + ABZR86_RS01955 0.47 -0.2
423,211 - ABZR86_RS01955 0.47 +0.4
423,267 + ABZR86_RS01955 0.51 +0.2
423,268 - ABZR86_RS01955 0.51 -0.0
423,268 - ABZR86_RS01955 0.51 +0.2
423,322 + ABZR86_RS01955 0.56 -0.2
423,322 + ABZR86_RS01955 0.56 -0.3
423,322 + ABZR86_RS01955 0.56 -0.1
423,322 + ABZR86_RS01955 0.56 -0.1
423,322 + ABZR86_RS01955 0.56 +0.1
423,323 - ABZR86_RS01955 0.56 -0.1
423,323 - ABZR86_RS01955 0.56 -0.2
423,323 - ABZR86_RS01955 0.56 +0.4
423,323 - ABZR86_RS01955 0.56 +0.6
423,345 - ABZR86_RS01955 0.57 -0.3
423,419 + ABZR86_RS01955 0.63 -0.2
423,419 + ABZR86_RS01955 0.63 +0.8
423,419 + ABZR86_RS01955 0.63 -0.4
423,419 + ABZR86_RS01955 0.63 +0.2
423,419 + ABZR86_RS01955 0.63 +0.5
423,419 + ABZR86_RS01955 0.63 -1.6
423,420 - ABZR86_RS01955 0.63 +0.7
423,420 - ABZR86_RS01955 0.63 -2.1
423,420 - ABZR86_RS01955 0.63 +0.3
423,420 - ABZR86_RS01955 0.63 -0.8
423,420 - ABZR86_RS01955 0.63 +1.4
423,420 - ABZR86_RS01955 0.63 -0.5

Or see this region's nucleotide sequence