Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2609

Experiment: MoYLS4 with benzoic 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2608 and DvMF_2609 are separated by 281 nucleotidesDvMF_2609 and DvMF_2610 overlap by 1 nucleotidesDvMF_2610 and DvMF_2611 overlap by 8 nucleotides DvMF_2608: DvMF_2608 - inner-membrane translocator (RefSeq), at 3,295,961 to 3,296,869 _2608 DvMF_2609: DvMF_2609 - inner-membrane translocator (RefSeq), at 3,297,151 to 3,298,398 _2609 DvMF_2610: DvMF_2610 - ABC transporter related (RefSeq), at 3,298,398 to 3,299,210 _2610 DvMF_2611: DvMF_2611 - ABC transporter related (RefSeq), at 3,299,203 to 3,299,907 _2611 Position (kb) 3297 3298 3299Strain fitness (log2 ratio) -2 -1 0 1at 3296.538 kb on - strand, within DvMF_2608at 3296.848 kb on + strandat 3296.871 kb on - strandat 3296.871 kb on - strandat 3296.999 kb on - strandat 3297.127 kb on - strandat 3297.436 kb on + strand, within DvMF_2609at 3297.568 kb on + strand, within DvMF_2609at 3297.754 kb on - strand, within DvMF_2609at 3298.114 kb on + strand, within DvMF_2609at 3298.192 kb on - strand, within DvMF_2609at 3298.714 kb on + strand, within DvMF_2610at 3298.714 kb on - strand, within DvMF_2610at 3298.794 kb on + strand, within DvMF_2610at 3298.802 kb on - strand, within DvMF_2610at 3298.915 kb on + strand, within DvMF_2610at 3299.174 kb on + strandat 3299.390 kb on + strand, within DvMF_2611

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.25 mg/ml
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3,296,538 - DvMF_2608 0.63 -2.7
3,296,848 + -1.0
3,296,871 - -0.2
3,296,871 - -0.4
3,296,999 - -0.5
3,297,127 - -0.9
3,297,436 + DvMF_2609 0.23 -1.9
3,297,568 + DvMF_2609 0.33 -1.3
3,297,754 - DvMF_2609 0.48 -1.9
3,298,114 + DvMF_2609 0.77 -1.3
3,298,192 - DvMF_2609 0.83 -1.5
3,298,714 + DvMF_2610 0.39 -0.9
3,298,714 - DvMF_2610 0.39 -0.5
3,298,794 + DvMF_2610 0.49 -1.1
3,298,802 - DvMF_2610 0.50 -1.7
3,298,915 + DvMF_2610 0.64 -0.9
3,299,174 + -1.8
3,299,390 + DvMF_2611 0.27 -1.3

Or see this region's nucleotide sequence