Experiment: MoYLS4 with benzoic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2479 and DvMF_2480 are separated by 313 nucleotides DvMF_2480 and DvMF_2481 are separated by 123 nucleotides DvMF_2481 and DvMF_2482 are separated by 395 nucleotides
DvMF_2479: DvMF_2479 - beta-lactamase domain protein (RefSeq), at 3,125,789 to 3,126,997
_2479
DvMF_2480: DvMF_2480 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 3,127,311 to 3,127,469
_2480
DvMF_2481: DvMF_2481 - desulfoferrodoxin (RefSeq), at 3,127,593 to 3,127,967
_2481
DvMF_2482: DvMF_2482 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,128,363 to 3,130,384
_2482
Position (kb)
3127
3128 Strain fitness (log2 ratio)
-1
0
1 at 3126.555 kb on + strand, within DvMF_2479 at 3126.604 kb on + strand, within DvMF_2479 at 3126.628 kb on - strand, within DvMF_2479 at 3126.674 kb on + strand, within DvMF_2479 at 3126.821 kb on - strand, within DvMF_2479 at 3127.103 kb on + strand at 3127.264 kb on + strand at 3127.284 kb on + strand at 3127.292 kb on - strand at 3127.309 kb on + strand at 3127.359 kb on - strand, within DvMF_2480 at 3127.792 kb on - strand, within DvMF_2481 at 3127.941 kb on + strand at 3127.941 kb on + strand at 3128.110 kb on + strand at 3128.147 kb on - strand at 3128.352 kb on - strand at 3128.354 kb on + strand at 3128.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.25 mg/ml remove 3,126,555 + DvMF_2479 0.63 -0.2 3,126,604 + DvMF_2479 0.67 -0.6 3,126,628 - DvMF_2479 0.69 -0.4 3,126,674 + DvMF_2479 0.73 -0.3 3,126,821 - DvMF_2479 0.85 -0.3 3,127,103 + -0.5 3,127,264 + -0.7 3,127,284 + -0.3 3,127,292 - -0.0 3,127,309 + -0.2 3,127,359 - DvMF_2480 0.30 -0.1 3,127,792 - DvMF_2481 0.53 -0.2 3,127,941 + +0.1 3,127,941 + +0.3 3,128,110 + -0.3 3,128,147 - +0.2 3,128,352 - -0.2 3,128,354 + -0.3 3,128,362 - +0.0
Or see this region's nucleotide sequence