Experiment: MoYLS4 with benzoic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1830 and DvMF_1831 are separated by 484 nucleotides DvMF_1831 and DvMF_1832 overlap by 4 nucleotides
DvMF_1830: DvMF_1830 - hypothetical protein (RefSeq), at 2,233,878 to 2,234,846
_1830
DvMF_1831: DvMF_1831 - transcriptional regulator, MarR family (RefSeq), at 2,235,331 to 2,235,993
_1831
DvMF_1832: DvMF_1832 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,235,990 to 2,237,174
_1832
Position (kb)
2235
2236 Strain fitness (log2 ratio)
-1
0
1 at 2234.667 kb on - strand, within DvMF_1830 at 2234.670 kb on + strand, within DvMF_1830 at 2234.681 kb on + strand, within DvMF_1830 at 2234.706 kb on - strand, within DvMF_1830 at 2234.760 kb on - strand at 2234.882 kb on + strand at 2234.926 kb on + strand at 2234.974 kb on - strand at 2234.979 kb on - strand at 2235.165 kb on - strand at 2235.172 kb on + strand at 2235.349 kb on + strand at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.599 kb on - strand, within DvMF_1831 at 2235.687 kb on + strand, within DvMF_1831 at 2235.725 kb on - strand, within DvMF_1831 at 2235.843 kb on + strand, within DvMF_1831 at 2235.846 kb on - strand, within DvMF_1831 at 2235.995 kb on - strand at 2236.205 kb on + strand, within DvMF_1832 at 2236.255 kb on + strand, within DvMF_1832 at 2236.359 kb on + strand, within DvMF_1832 at 2236.402 kb on - strand, within DvMF_1832 at 2236.423 kb on - strand, within DvMF_1832 at 2236.625 kb on - strand, within DvMF_1832 at 2236.668 kb on - strand, within DvMF_1832 at 2236.725 kb on - strand, within DvMF_1832 at 2236.786 kb on - strand, within DvMF_1832 at 2236.800 kb on - strand, within DvMF_1832 at 2236.840 kb on - strand, within DvMF_1832 at 2236.853 kb on - strand, within DvMF_1832
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.25 mg/ml remove 2,234,667 - DvMF_1830 0.81 -0.5 2,234,670 + DvMF_1830 0.82 -0.5 2,234,681 + DvMF_1830 0.83 -1.1 2,234,706 - DvMF_1830 0.85 -0.8 2,234,760 - -0.5 2,234,882 + +0.2 2,234,926 + -0.5 2,234,974 - -0.1 2,234,979 - -0.2 2,235,165 - -0.4 2,235,172 + -0.1 2,235,349 + -0.3 2,235,357 - +0.4 2,235,357 - +0.4 2,235,599 - DvMF_1831 0.40 -0.3 2,235,687 + DvMF_1831 0.54 -0.2 2,235,725 - DvMF_1831 0.59 -0.3 2,235,843 + DvMF_1831 0.77 -0.2 2,235,846 - DvMF_1831 0.78 -0.1 2,235,995 - -0.3 2,236,205 + DvMF_1832 0.18 -0.3 2,236,255 + DvMF_1832 0.22 +0.3 2,236,359 + DvMF_1832 0.31 -0.2 2,236,402 - DvMF_1832 0.35 -0.2 2,236,423 - DvMF_1832 0.37 +0.7 2,236,625 - DvMF_1832 0.54 -0.1 2,236,668 - DvMF_1832 0.57 -0.1 2,236,725 - DvMF_1832 0.62 -0.3 2,236,786 - DvMF_1832 0.67 -0.7 2,236,800 - DvMF_1832 0.68 +0.1 2,236,840 - DvMF_1832 0.72 +0.1 2,236,853 - DvMF_1832 0.73 -0.0
Or see this region's nucleotide sequence