Experiment: Growth with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25400 and PFLU_RS25405 are separated by 123 nucleotides PFLU_RS25405 and PFLU_RS25410 are separated by 29 nucleotides PFLU_RS25410 and PFLU_RS25415 are separated by 1 nucleotides PFLU_RS25415 and PFLU_RS25420 are separated by 26 nucleotides
PFLU_RS25400: PFLU_RS25400 - methyl-accepting chemotaxis protein, at 5,669,858 to 5,671,777
_RS25400
PFLU_RS25405: PFLU_RS25405 - VOC family protein, at 5,671,901 to 5,672,269
_RS25405
PFLU_RS25410: PFLU_RS25410 - D-aminoacylase, at 5,672,299 to 5,673,762
_RS25410
PFLU_RS25415: PFLU_RS25415 - MurR/RpiR family transcriptional regulator, at 5,673,764 to 5,674,624
_RS25415
PFLU_RS25420: PFLU_RS25420 - 2-keto-3-deoxygluconate permease, at 5,674,651 to 5,676,000
_RS25420
Position (kb) 5672
5673
5674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5671.542 kb on + strand, within PFLU_RS25400 at 5671.542 kb on + strand, within PFLU_RS25400 at 5671.542 kb on + strand, within PFLU_RS25400 at 5671.542 kb on + strand, within PFLU_RS25400 at 5671.542 kb on + strand, within PFLU_RS25400 at 5671.543 kb on - strand, within PFLU_RS25400 at 5671.543 kb on - strand, within PFLU_RS25400 at 5671.564 kb on + strand, within PFLU_RS25400 at 5671.564 kb on + strand, within PFLU_RS25400 at 5671.565 kb on - strand, within PFLU_RS25400 at 5671.688 kb on - strand at 5671.688 kb on - strand at 5671.775 kb on + strand at 5671.775 kb on + strand at 5671.776 kb on - strand at 5672.004 kb on + strand, within PFLU_RS25405 at 5672.004 kb on + strand, within PFLU_RS25405 at 5672.005 kb on - strand, within PFLU_RS25405 at 5672.037 kb on + strand, within PFLU_RS25405 at 5672.037 kb on + strand, within PFLU_RS25405 at 5672.038 kb on - strand, within PFLU_RS25405 at 5672.038 kb on - strand, within PFLU_RS25405 at 5672.138 kb on + strand, within PFLU_RS25405 at 5672.138 kb on + strand, within PFLU_RS25405 at 5672.138 kb on + strand, within PFLU_RS25405 at 5672.139 kb on - strand, within PFLU_RS25405 at 5672.142 kb on + strand, within PFLU_RS25405 at 5672.142 kb on + strand, within PFLU_RS25405 at 5672.143 kb on - strand, within PFLU_RS25405 at 5672.143 kb on - strand, within PFLU_RS25405 at 5672.143 kb on - strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.205 kb on + strand, within PFLU_RS25405 at 5672.206 kb on - strand, within PFLU_RS25405 at 5672.206 kb on - strand, within PFLU_RS25405 at 5672.206 kb on - strand, within PFLU_RS25405 at 5672.261 kb on + strand at 5672.262 kb on - strand at 5672.285 kb on + strand at 5672.286 kb on - strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.300 kb on + strand at 5672.301 kb on - strand at 5672.301 kb on - strand at 5672.301 kb on - strand at 5672.301 kb on - strand at 5672.301 kb on - strand at 5672.302 kb on + strand at 5672.302 kb on + strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.303 kb on - strand at 5672.384 kb on + strand at 5672.385 kb on - strand at 5672.741 kb on + strand, within PFLU_RS25410 at 5672.742 kb on - strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.744 kb on + strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410 at 5672.745 kb on - strand, within PFLU_RS25410 at 5672.764 kb on + strand, within PFLU_RS25410 at 5672.764 kb on + strand, within PFLU_RS25410 at 5672.765 kb on - strand, within PFLU_RS25410 at 5672.765 kb on - strand, within PFLU_RS25410 at 5672.859 kb on + strand, within PFLU_RS25410 at 5672.859 kb on + strand, within PFLU_RS25410 at 5672.860 kb on - strand, within PFLU_RS25410 at 5672.868 kb on + strand, within PFLU_RS25410 at 5672.869 kb on - strand, within PFLU_RS25410 at 5672.869 kb on - strand, within PFLU_RS25410 at 5672.921 kb on + strand, within PFLU_RS25410 at 5672.921 kb on + strand, within PFLU_RS25410 at 5672.921 kb on + strand, within PFLU_RS25410 at 5672.991 kb on + strand, within PFLU_RS25410 at 5672.991 kb on + strand, within PFLU_RS25410 at 5673.003 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.200 kb on + strand, within PFLU_RS25410 at 5673.201 kb on - strand, within PFLU_RS25410 at 5673.201 kb on - strand, within PFLU_RS25410 at 5673.201 kb on - strand, within PFLU_RS25410 at 5673.376 kb on + strand, within PFLU_RS25410 at 5673.377 kb on - strand, within PFLU_RS25410 at 5673.377 kb on - strand, within PFLU_RS25410 at 5673.377 kb on - strand, within PFLU_RS25410 at 5673.377 kb on - strand, within PFLU_RS25410 at 5673.701 kb on + strand at 5673.701 kb on + strand at 5673.701 kb on + strand at 5673.701 kb on + strand at 5673.702 kb on - strand at 5673.702 kb on - strand at 5673.702 kb on - strand at 5673.702 kb on - strand at 5673.702 kb on - strand at 5673.742 kb on + strand at 5673.742 kb on + strand at 5673.743 kb on - strand at 5673.755 kb on + strand at 5673.755 kb on + strand at 5673.756 kb on - strand at 5673.756 kb on - strand at 5673.927 kb on + strand, within PFLU_RS25415 at 5673.928 kb on - strand, within PFLU_RS25415 at 5673.928 kb on - strand, within PFLU_RS25415 at 5673.928 kb on - strand, within PFLU_RS25415 at 5673.928 kb on - strand, within PFLU_RS25415 at 5673.928 kb on - strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.932 kb on - strand, within PFLU_RS25415 at 5674.007 kb on - strand, within PFLU_RS25415 at 5674.007 kb on - strand, within PFLU_RS25415 at 5674.026 kb on + strand, within PFLU_RS25415 at 5674.026 kb on + strand, within PFLU_RS25415 at 5674.026 kb on + strand, within PFLU_RS25415 at 5674.026 kb on + strand, within PFLU_RS25415 at 5674.026 kb on + strand, within PFLU_RS25415 at 5674.027 kb on - strand, within PFLU_RS25415 at 5674.027 kb on - strand, within PFLU_RS25415 at 5674.184 kb on + strand, within PFLU_RS25415 at 5674.184 kb on + strand, within PFLU_RS25415 at 5674.185 kb on - strand, within PFLU_RS25415 at 5674.185 kb on - strand, within PFLU_RS25415 at 5674.185 kb on - strand, within PFLU_RS25415 at 5674.445 kb on - strand, within PFLU_RS25415 at 5674.445 kb on - strand, within PFLU_RS25415 at 5674.445 kb on - strand, within PFLU_RS25415 at 5674.445 kb on - strand, within PFLU_RS25415 at 5674.445 kb on - strand, within PFLU_RS25415 at 5674.565 kb on - strand at 5674.611 kb on + strand at 5674.611 kb on + strand at 5674.611 kb on + strand at 5674.612 kb on - strand at 5674.612 kb on - strand at 5674.638 kb on + strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.655 kb on - strand at 5674.655 kb on - strand at 5674.655 kb on - strand at 5674.655 kb on - strand at 5674.655 kb on - strand at 5674.673 kb on + strand at 5674.673 kb on + strand at 5674.674 kb on - strand at 5674.674 kb on - strand at 5674.674 kb on - strand at 5674.749 kb on + strand at 5674.750 kb on - strand at 5674.750 kb on - strand at 5674.750 kb on - strand at 5674.757 kb on + strand at 5674.757 kb on + strand at 5674.757 kb on + strand at 5674.757 kb on + strand at 5674.757 kb on + strand at 5674.757 kb on + strand at 5674.757 kb on + strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth with Chloride 200 mM remove 5,671,542 + PFLU_RS25400 0.88 +0.9 5,671,542 + PFLU_RS25400 0.88 -0.2 5,671,542 + PFLU_RS25400 0.88 +0.2 5,671,542 + PFLU_RS25400 0.88 +0.8 5,671,542 + PFLU_RS25400 0.88 +0.6 5,671,543 - PFLU_RS25400 0.88 +0.7 5,671,543 - PFLU_RS25400 0.88 -1.3 5,671,564 + PFLU_RS25400 0.89 +0.2 5,671,564 + PFLU_RS25400 0.89 -0.7 5,671,565 - PFLU_RS25400 0.89 -0.6 5,671,688 - +0.1 5,671,688 - -1.3 5,671,775 + -0.1 5,671,775 + -1.3 5,671,776 - +0.1 5,672,004 + PFLU_RS25405 0.28 +1.9 5,672,004 + PFLU_RS25405 0.28 +0.6 5,672,005 - PFLU_RS25405 0.28 -1.9 5,672,037 + PFLU_RS25405 0.37 -1.2 5,672,037 + PFLU_RS25405 0.37 +0.1 5,672,038 - PFLU_RS25405 0.37 +1.5 5,672,038 - PFLU_RS25405 0.37 +0.1 5,672,138 + PFLU_RS25405 0.64 -0.0 5,672,138 + PFLU_RS25405 0.64 -2.1 5,672,138 + PFLU_RS25405 0.64 -2.7 5,672,139 - PFLU_RS25405 0.64 +0.8 5,672,142 + PFLU_RS25405 0.65 +0.7 5,672,142 + PFLU_RS25405 0.65 -0.9 5,672,143 - PFLU_RS25405 0.66 -0.2 5,672,143 - PFLU_RS25405 0.66 +0.1 5,672,143 - PFLU_RS25405 0.66 -2.4 5,672,205 + PFLU_RS25405 0.82 +0.0 5,672,205 + PFLU_RS25405 0.82 +0.4 5,672,205 + PFLU_RS25405 0.82 +0.7 5,672,205 + PFLU_RS25405 0.82 -1.8 5,672,205 + PFLU_RS25405 0.82 -0.9 5,672,205 + PFLU_RS25405 0.82 +1.0 5,672,205 + PFLU_RS25405 0.82 -1.0 5,672,206 - PFLU_RS25405 0.83 -0.3 5,672,206 - PFLU_RS25405 0.83 +0.4 5,672,206 - PFLU_RS25405 0.83 +0.5 5,672,261 + -0.1 5,672,262 - -0.4 5,672,285 + +0.3 5,672,286 - +0.1 5,672,300 + -0.9 5,672,300 + +0.4 5,672,300 + +0.1 5,672,300 + +0.0 5,672,300 + +0.0 5,672,300 + +0.7 5,672,301 - +0.8 5,672,301 - -0.7 5,672,301 - +0.9 5,672,301 - -1.7 5,672,301 - -1.1 5,672,302 + -1.7 5,672,302 + -2.4 5,672,303 - +1.2 5,672,303 - -0.3 5,672,303 - +0.5 5,672,303 - -1.6 5,672,303 - +1.1 5,672,303 - +0.9 5,672,303 - -0.4 5,672,384 + +0.9 5,672,385 - +1.1 5,672,741 + PFLU_RS25410 0.30 -0.6 5,672,742 - PFLU_RS25410 0.30 -1.3 5,672,744 + PFLU_RS25410 0.30 +1.2 5,672,744 + PFLU_RS25410 0.30 -1.1 5,672,744 + PFLU_RS25410 0.30 -0.9 5,672,744 + PFLU_RS25410 0.30 -0.7 5,672,744 + PFLU_RS25410 0.30 -0.4 5,672,744 + PFLU_RS25410 0.30 +0.1 5,672,744 + PFLU_RS25410 0.30 -0.0 5,672,744 + PFLU_RS25410 0.30 +1.0 5,672,745 - PFLU_RS25410 0.30 -0.5 5,672,745 - PFLU_RS25410 0.30 +1.6 5,672,745 - PFLU_RS25410 0.30 +0.7 5,672,745 - PFLU_RS25410 0.30 +1.6 5,672,745 - PFLU_RS25410 0.30 -1.7 5,672,764 + PFLU_RS25410 0.32 -0.0 5,672,764 + PFLU_RS25410 0.32 -0.1 5,672,765 - PFLU_RS25410 0.32 +0.6 5,672,765 - PFLU_RS25410 0.32 +0.5 5,672,859 + PFLU_RS25410 0.38 -2.3 5,672,859 + PFLU_RS25410 0.38 -0.2 5,672,860 - PFLU_RS25410 0.38 -0.3 5,672,868 + PFLU_RS25410 0.39 +0.1 5,672,869 - PFLU_RS25410 0.39 +1.0 5,672,869 - PFLU_RS25410 0.39 +0.1 5,672,921 + PFLU_RS25410 0.42 -1.7 5,672,921 + PFLU_RS25410 0.42 +0.1 5,672,921 + PFLU_RS25410 0.42 +0.4 5,672,991 + PFLU_RS25410 0.47 -1.1 5,672,991 + PFLU_RS25410 0.47 -0.1 5,673,003 + PFLU_RS25410 0.48 +0.1 5,673,125 + PFLU_RS25410 0.56 -0.4 5,673,125 + PFLU_RS25410 0.56 -1.6 5,673,125 + PFLU_RS25410 0.56 -0.6 5,673,125 + PFLU_RS25410 0.56 +0.4 5,673,125 + PFLU_RS25410 0.56 -0.3 5,673,125 + PFLU_RS25410 0.56 -1.2 5,673,125 + PFLU_RS25410 0.56 +0.7 5,673,126 - PFLU_RS25410 0.56 +1.1 5,673,126 - PFLU_RS25410 0.56 +0.4 5,673,126 - PFLU_RS25410 0.56 -1.3 5,673,126 - PFLU_RS25410 0.56 -0.7 5,673,126 - PFLU_RS25410 0.56 -0.1 5,673,126 - PFLU_RS25410 0.56 -0.3 5,673,126 - PFLU_RS25410 0.56 -3.2 5,673,126 - PFLU_RS25410 0.56 -0.1 5,673,126 - PFLU_RS25410 0.56 -0.3 5,673,200 + PFLU_RS25410 0.62 -0.6 5,673,201 - PFLU_RS25410 0.62 +0.6 5,673,201 - PFLU_RS25410 0.62 -0.1 5,673,201 - PFLU_RS25410 0.62 -0.5 5,673,376 + PFLU_RS25410 0.74 -0.1 5,673,377 - PFLU_RS25410 0.74 -0.9 5,673,377 - PFLU_RS25410 0.74 +0.7 5,673,377 - PFLU_RS25410 0.74 +1.7 5,673,377 - PFLU_RS25410 0.74 -0.3 5,673,701 + -0.5 5,673,701 + -1.0 5,673,701 + +1.7 5,673,701 + +1.5 5,673,702 - +0.1 5,673,702 - +1.0 5,673,702 - -1.1 5,673,702 - +0.6 5,673,702 - -2.1 5,673,742 + +0.4 5,673,742 + +0.4 5,673,743 - -0.4 5,673,755 + -0.9 5,673,755 + -0.1 5,673,756 - +0.1 5,673,756 - +1.1 5,673,927 + PFLU_RS25415 0.19 +1.0 5,673,928 - PFLU_RS25415 0.19 -2.4 5,673,928 - PFLU_RS25415 0.19 +0.9 5,673,928 - PFLU_RS25415 0.19 +0.7 5,673,928 - PFLU_RS25415 0.19 +0.7 5,673,928 - PFLU_RS25415 0.19 +0.7 5,673,931 + PFLU_RS25415 0.19 -0.3 5,673,931 + PFLU_RS25415 0.19 -0.5 5,673,931 + PFLU_RS25415 0.19 -0.4 5,673,931 + PFLU_RS25415 0.19 -0.3 5,673,931 + PFLU_RS25415 0.19 +1.3 5,673,931 + PFLU_RS25415 0.19 -0.6 5,673,932 - PFLU_RS25415 0.20 -0.9 5,674,007 - PFLU_RS25415 0.28 +0.6 5,674,007 - PFLU_RS25415 0.28 -1.1 5,674,026 + PFLU_RS25415 0.30 +0.7 5,674,026 + PFLU_RS25415 0.30 +2.3 5,674,026 + PFLU_RS25415 0.30 -0.6 5,674,026 + PFLU_RS25415 0.30 -0.4 5,674,026 + PFLU_RS25415 0.30 +1.7 5,674,027 - PFLU_RS25415 0.31 +1.1 5,674,027 - PFLU_RS25415 0.31 +0.7 5,674,184 + PFLU_RS25415 0.49 +1.7 5,674,184 + PFLU_RS25415 0.49 +0.0 5,674,185 - PFLU_RS25415 0.49 +0.1 5,674,185 - PFLU_RS25415 0.49 +1.0 5,674,185 - PFLU_RS25415 0.49 -0.6 5,674,445 - PFLU_RS25415 0.79 +0.4 5,674,445 - PFLU_RS25415 0.79 +0.2 5,674,445 - PFLU_RS25415 0.79 +0.1 5,674,445 - PFLU_RS25415 0.79 +0.7 5,674,445 - PFLU_RS25415 0.79 -0.4 5,674,565 - +0.3 5,674,611 + +1.3 5,674,611 + +0.7 5,674,611 + +1.2 5,674,612 - -0.6 5,674,612 - -0.2 5,674,638 + +0.3 5,674,654 + -0.6 5,674,654 + -0.6 5,674,654 + +0.4 5,674,655 - -1.3 5,674,655 - +1.3 5,674,655 - -1.1 5,674,655 - +0.5 5,674,655 - -0.6 5,674,673 + +0.4 5,674,673 + +0.3 5,674,674 - +1.3 5,674,674 - -0.3 5,674,674 - -1.1 5,674,749 + +1.1 5,674,750 - +0.6 5,674,750 - +0.9 5,674,750 - -0.6 5,674,757 + -0.0 5,674,757 + -1.4 5,674,757 + +0.8 5,674,757 + +2.5 5,674,757 + +0.3 5,674,757 + +0.1 5,674,757 + -0.3 5,674,758 - -1.6 5,674,758 - +1.1 5,674,758 - -2.1 5,674,758 - +0.3 5,674,758 - +1.7 5,674,758 - +0.6 5,674,758 - -1.2 5,674,758 - -1.1 5,674,758 - +0.3 5,674,758 - -0.2
Or see this region's nucleotide sequence