Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05005

Experiment: formate McAA B12 dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05000 and MMJJ_RS05005 are separated by 8 nucleotidesMMJJ_RS05005 and MMJJ_RS05010 are separated by 321 nucleotides MMJJ_RS05000: MMJJ_RS05000 - mRNA surveillance protein pelota, at 928,476 to 929,522 _RS05000 MMJJ_RS05005: MMJJ_RS05005 - hypothetical protein, at 929,531 to 930,271 _RS05005 MMJJ_RS05010: MMJJ_RS05010 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 930,593 to 931,672 _RS05010 Position (kb) 929 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 928.560 kb on + strandat 928.713 kb on + strand, within MMJJ_RS05000at 928.769 kb on - strand, within MMJJ_RS05000at 928.937 kb on - strandat 929.104 kb on + strand, within MMJJ_RS05000at 929.354 kb on + strand, within MMJJ_RS05000at 929.372 kb on + strand, within MMJJ_RS05000at 929.516 kb on + strandat 929.520 kb on - strandat 929.520 kb on - strandat 929.521 kb on + strandat 929.521 kb on + strandat 929.553 kb on - strandat 929.554 kb on + strandat 929.581 kb on + strandat 929.592 kb on - strandat 929.592 kb on - strandat 929.593 kb on + strandat 929.594 kb on - strandat 929.594 kb on - strandat 929.594 kb on - strandat 929.594 kb on - strandat 929.594 kb on - strandat 929.594 kb on - strandat 929.595 kb on + strandat 929.595 kb on + strandat 929.597 kb on - strandat 929.598 kb on + strandat 929.598 kb on + strandat 929.614 kb on + strand, within MMJJ_RS05005at 929.640 kb on - strand, within MMJJ_RS05005at 929.640 kb on - strand, within MMJJ_RS05005at 929.642 kb on - strand, within MMJJ_RS05005at 929.665 kb on - strand, within MMJJ_RS05005at 929.674 kb on + strand, within MMJJ_RS05005at 929.683 kb on + strand, within MMJJ_RS05005at 929.753 kb on + strand, within MMJJ_RS05005at 929.753 kb on + strand, within MMJJ_RS05005at 929.796 kb on - strand, within MMJJ_RS05005at 929.801 kb on - strand, within MMJJ_RS05005at 929.812 kb on - strand, within MMJJ_RS05005at 929.827 kb on + strand, within MMJJ_RS05005at 929.850 kb on - strand, within MMJJ_RS05005at 929.854 kb on + strand, within MMJJ_RS05005at 929.854 kb on + strand, within MMJJ_RS05005at 929.860 kb on - strand, within MMJJ_RS05005at 929.894 kb on + strand, within MMJJ_RS05005at 929.986 kb on + strand, within MMJJ_RS05005at 929.986 kb on + strand, within MMJJ_RS05005at 929.986 kb on + strand, within MMJJ_RS05005at 929.989 kb on - strand, within MMJJ_RS05005at 930.043 kb on + strand, within MMJJ_RS05005at 930.043 kb on + strand, within MMJJ_RS05005at 930.094 kb on - strand, within MMJJ_RS05005at 930.122 kb on + strand, within MMJJ_RS05005at 930.138 kb on - strand, within MMJJ_RS05005at 930.139 kb on + strand, within MMJJ_RS05005at 930.139 kb on + strand, within MMJJ_RS05005at 930.139 kb on + strand, within MMJJ_RS05005at 930.139 kb on + strand, within MMJJ_RS05005at 930.139 kb on + strand, within MMJJ_RS05005at 930.139 kb on + strand, within MMJJ_RS05005at 930.139 kb on + strand, within MMJJ_RS05005at 930.176 kb on - strand, within MMJJ_RS05005at 930.176 kb on - strand, within MMJJ_RS05005at 930.176 kb on - strand, within MMJJ_RS05005at 930.176 kb on - strand, within MMJJ_RS05005at 930.176 kb on - strand, within MMJJ_RS05005at 930.176 kb on - strand, within MMJJ_RS05005at 930.177 kb on + strand, within MMJJ_RS05005at 930.185 kb on - strand, within MMJJ_RS05005at 930.185 kb on - strand, within MMJJ_RS05005at 930.186 kb on + strand, within MMJJ_RS05005at 930.197 kb on + strand, within MMJJ_RS05005at 930.210 kb on - strandat 930.246 kb on - strandat 930.269 kb on - strandat 930.284 kb on - strandat 930.284 kb on - strandat 930.284 kb on - strandat 930.285 kb on + strandat 930.304 kb on - strandat 930.304 kb on - strandat 930.305 kb on + strandat 930.308 kb on - strandat 930.309 kb on + strandat 930.309 kb on + strandat 930.309 kb on + strandat 930.323 kb on - strandat 930.338 kb on - strandat 930.385 kb on + strandat 930.395 kb on + strandat 930.421 kb on - strandat 930.429 kb on - strandat 930.438 kb on - strandat 930.444 kb on + strandat 930.461 kb on - strandat 930.461 kb on - strandat 930.476 kb on - strandat 930.505 kb on + strandat 930.525 kb on - strandat 930.533 kb on - strandat 930.534 kb on + strandat 930.544 kb on - strandat 930.560 kb on - strandat 930.569 kb on + strandat 930.604 kb on - strandat 930.729 kb on + strand, within MMJJ_RS05010at 930.731 kb on - strand, within MMJJ_RS05010at 930.732 kb on + strand, within MMJJ_RS05010at 930.796 kb on - strand, within MMJJ_RS05010at 930.831 kb on - strand, within MMJJ_RS05010at 930.832 kb on + strand, within MMJJ_RS05010at 930.832 kb on + strand, within MMJJ_RS05010at 930.832 kb on + strand, within MMJJ_RS05010at 930.854 kb on + strand, within MMJJ_RS05010at 930.863 kb on - strand, within MMJJ_RS05010at 930.863 kb on - strand, within MMJJ_RS05010at 930.864 kb on + strand, within MMJJ_RS05010at 930.875 kb on - strand, within MMJJ_RS05010at 930.875 kb on - strand, within MMJJ_RS05010at 930.875 kb on - strand, within MMJJ_RS05010at 930.875 kb on - strand, within MMJJ_RS05010at 930.875 kb on - strand, within MMJJ_RS05010at 930.876 kb on + strand, within MMJJ_RS05010at 930.876 kb on + strand, within MMJJ_RS05010at 930.876 kb on + strand, within MMJJ_RS05010at 930.876 kb on + strand, within MMJJ_RS05010at 930.876 kb on + strand, within MMJJ_RS05010at 930.887 kb on - strand, within MMJJ_RS05010at 930.887 kb on - strand, within MMJJ_RS05010at 930.950 kb on - strand, within MMJJ_RS05010at 930.951 kb on + strand, within MMJJ_RS05010at 930.951 kb on + strand, within MMJJ_RS05010at 930.967 kb on - strand, within MMJJ_RS05010at 931.037 kb on - strand, within MMJJ_RS05010at 931.038 kb on + strand, within MMJJ_RS05010at 931.075 kb on - strand, within MMJJ_RS05010at 931.076 kb on + strand, within MMJJ_RS05010at 931.128 kb on + strand, within MMJJ_RS05010at 931.128 kb on + strand, within MMJJ_RS05010at 931.140 kb on + strand, within MMJJ_RS05010at 931.170 kb on - strand, within MMJJ_RS05010at 931.170 kb on - strand, within MMJJ_RS05010at 931.170 kb on - strand, within MMJJ_RS05010at 931.174 kb on - strand, within MMJJ_RS05010at 931.175 kb on + strand, within MMJJ_RS05010at 931.219 kb on + strand, within MMJJ_RS05010at 931.243 kb on - strand, within MMJJ_RS05010at 931.255 kb on - strand, within MMJJ_RS05010

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA B12 dropout
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928,560 + -1.1
928,713 + MMJJ_RS05000 0.23 +0.9
928,769 - MMJJ_RS05000 0.28 -0.3
928,937 - -0.9
929,104 + MMJJ_RS05000 0.60 -0.9
929,354 + MMJJ_RS05000 0.84 -0.1
929,372 + MMJJ_RS05000 0.86 -2.1
929,516 + -1.5
929,520 - +0.8
929,520 - -0.6
929,521 + +0.3
929,521 + +0.1
929,553 - +0.4
929,554 + +0.7
929,581 + +0.3
929,592 - -0.5
929,592 - -0.2
929,593 + +0.3
929,594 - -0.0
929,594 - -1.4
929,594 - -0.2
929,594 - -0.6
929,594 - +0.7
929,594 - -0.9
929,595 + -0.2
929,595 + -1.2
929,597 - -0.2
929,598 + -0.4
929,598 + -0.1
929,614 + MMJJ_RS05005 0.11 +1.1
929,640 - MMJJ_RS05005 0.15 +0.2
929,640 - MMJJ_RS05005 0.15 +0.1
929,642 - MMJJ_RS05005 0.15 -0.4
929,665 - MMJJ_RS05005 0.18 +0.7
929,674 + MMJJ_RS05005 0.19 +0.5
929,683 + MMJJ_RS05005 0.21 +0.1
929,753 + MMJJ_RS05005 0.30 -0.1
929,753 + MMJJ_RS05005 0.30 +0.6
929,796 - MMJJ_RS05005 0.36 +0.0
929,801 - MMJJ_RS05005 0.36 +1.4
929,812 - MMJJ_RS05005 0.38 -0.2
929,827 + MMJJ_RS05005 0.40 +1.2
929,850 - MMJJ_RS05005 0.43 +0.4
929,854 + MMJJ_RS05005 0.44 -0.0
929,854 + MMJJ_RS05005 0.44 -0.4
929,860 - MMJJ_RS05005 0.44 -0.6
929,894 + MMJJ_RS05005 0.49 +0.1
929,986 + MMJJ_RS05005 0.61 -1.0
929,986 + MMJJ_RS05005 0.61 +0.4
929,986 + MMJJ_RS05005 0.61 -1.6
929,989 - MMJJ_RS05005 0.62 +0.8
930,043 + MMJJ_RS05005 0.69 +0.4
930,043 + MMJJ_RS05005 0.69 +0.0
930,094 - MMJJ_RS05005 0.76 -0.2
930,122 + MMJJ_RS05005 0.80 -1.6
930,138 - MMJJ_RS05005 0.82 -0.6
930,139 + MMJJ_RS05005 0.82 +0.7
930,139 + MMJJ_RS05005 0.82 -0.5
930,139 + MMJJ_RS05005 0.82 +0.7
930,139 + MMJJ_RS05005 0.82 +0.8
930,139 + MMJJ_RS05005 0.82 +0.1
930,139 + MMJJ_RS05005 0.82 -2.0
930,139 + MMJJ_RS05005 0.82 -0.7
930,176 - MMJJ_RS05005 0.87 +0.3
930,176 - MMJJ_RS05005 0.87 +1.2
930,176 - MMJJ_RS05005 0.87 +1.2
930,176 - MMJJ_RS05005 0.87 +1.2
930,176 - MMJJ_RS05005 0.87 +0.9
930,176 - MMJJ_RS05005 0.87 -0.6
930,177 + MMJJ_RS05005 0.87 +1.1
930,185 - MMJJ_RS05005 0.88 +0.0
930,185 - MMJJ_RS05005 0.88 +0.3
930,186 + MMJJ_RS05005 0.88 +0.6
930,197 + MMJJ_RS05005 0.90 +0.7
930,210 - +0.8
930,246 - -0.6
930,269 - -0.4
930,284 - +0.3
930,284 - -0.3
930,284 - -0.1
930,285 + -2.5
930,304 - +0.3
930,304 - -0.3
930,305 + +0.2
930,308 - +0.3
930,309 + -0.3
930,309 + -1.4
930,309 + +0.4
930,323 - +1.6
930,338 - +0.6
930,385 + +0.2
930,395 + +0.5
930,421 - -0.2
930,429 - -0.5
930,438 - +0.4
930,444 + -0.2
930,461 - -0.8
930,461 - -0.4
930,476 - +1.2
930,505 + +0.6
930,525 - -1.6
930,533 - +0.3
930,534 + +0.3
930,544 - +1.0
930,560 - +0.5
930,569 + +0.9
930,604 - -0.1
930,729 + MMJJ_RS05010 0.13 -2.8
930,731 - MMJJ_RS05010 0.13 +0.3
930,732 + MMJJ_RS05010 0.13 -1.3
930,796 - MMJJ_RS05010 0.19 -0.3
930,831 - MMJJ_RS05010 0.22 +0.1
930,832 + MMJJ_RS05010 0.22 +1.8
930,832 + MMJJ_RS05010 0.22 -1.4
930,832 + MMJJ_RS05010 0.22 -1.1
930,854 + MMJJ_RS05010 0.24 +0.2
930,863 - MMJJ_RS05010 0.25 +0.5
930,863 - MMJJ_RS05010 0.25 -2.2
930,864 + MMJJ_RS05010 0.25 -0.4
930,875 - MMJJ_RS05010 0.26 +0.8
930,875 - MMJJ_RS05010 0.26 +0.8
930,875 - MMJJ_RS05010 0.26 +0.6
930,875 - MMJJ_RS05010 0.26 +0.1
930,875 - MMJJ_RS05010 0.26 -1.1
930,876 + MMJJ_RS05010 0.26 +0.5
930,876 + MMJJ_RS05010 0.26 +0.1
930,876 + MMJJ_RS05010 0.26 +0.1
930,876 + MMJJ_RS05010 0.26 +0.5
930,876 + MMJJ_RS05010 0.26 +0.2
930,887 - MMJJ_RS05010 0.27 -0.7
930,887 - MMJJ_RS05010 0.27 -0.3
930,950 - MMJJ_RS05010 0.33 -0.1
930,951 + MMJJ_RS05010 0.33 -0.3
930,951 + MMJJ_RS05010 0.33 +0.5
930,967 - MMJJ_RS05010 0.35 +0.1
931,037 - MMJJ_RS05010 0.41 -0.5
931,038 + MMJJ_RS05010 0.41 +0.3
931,075 - MMJJ_RS05010 0.45 -0.2
931,076 + MMJJ_RS05010 0.45 +0.5
931,128 + MMJJ_RS05010 0.50 -2.1
931,128 + MMJJ_RS05010 0.50 +0.2
931,140 + MMJJ_RS05010 0.51 -1.0
931,170 - MMJJ_RS05010 0.53 -0.8
931,170 - MMJJ_RS05010 0.53 -1.3
931,170 - MMJJ_RS05010 0.53 -0.2
931,174 - MMJJ_RS05010 0.54 -1.0
931,175 + MMJJ_RS05010 0.54 -0.2
931,219 + MMJJ_RS05010 0.58 -0.9
931,243 - MMJJ_RS05010 0.60 -1.9
931,255 - MMJJ_RS05010 0.61 -0.7

Or see this region's nucleotide sequence