Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04640

Experiment: formate McAA B12 dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA B12 dropout
863,615	+				-0.4
863,615	+				+0.8
863,617	-				-0.4
863,617	-				-0.0
863,618	+				+0.6
863,669	-				-0.3
863,669	-				-1.1
863,677	-				+0.4
863,677	-				+0.2
863,678	+				-1.0
863,700	-				-0.0
863,704	-				+0.5
863,705	+				+1.1
863,731	+				+0.4
863,736	-				+0.4
863,736	-				-1.3
863,738	-				-0.7
863,750	-				+1.1
863,754	-				-0.6
863,754	-				+0.0
863,755	+				+1.0
863,755	+				+0.0
863,758	+				+0.4
863,761	+				+0.6
863,778	-				+0.6
863,792	+				-2.1
863,804	-				-0.2
863,804	-				-1.2
863,805	+				+0.9
863,911	-		MMJJ_RS04630	0.28	-2.1
864,015	-				-2.2
864,182	+		MMJJ_RS04635	0.32	+0.0
864,182	+		MMJJ_RS04635	0.32	+0.0
864,186	+		MMJJ_RS04635	0.32	-0.6
864,186	+		MMJJ_RS04635	0.32	+0.7
864,199	-		MMJJ_RS04635	0.35	-1.1
864,208	-		MMJJ_RS04635	0.37	+0.3
864,208	-		MMJJ_RS04635	0.37	+0.2
864,209	+		MMJJ_RS04635	0.37	-0.4
864,213	-		MMJJ_RS04635	0.38	-0.5
864,216	-		MMJJ_RS04635	0.38	+0.4
864,444	-		MMJJ_RS04635	0.82	+0.9
864,486	-				-0.5
864,486	-				+0.1
864,486	-				+1.0
864,487	+				-1.4
864,518	-				+0.3
864,519	+				-0.3
864,519	+				+0.8
864,520	-				+0.4
864,520	-				+1.6
864,520	-				-0.6
864,520	-				+0.5
864,520	-				-1.2
864,521	+				+1.0
864,544	-				+1.3
864,549	-				-0.8
864,549	-				-1.2
864,549	-				+0.4
864,549	-				+0.5
864,549	-				-0.2
864,549	-				+1.2
864,549	-				+0.8
864,549	-				-0.7
864,549	-				-0.2
864,549	-				+0.1
864,549	-				-1.1
864,550	+				-0.8
864,550	+				+0.8
864,550	+				+0.3
864,550	+				-0.5
864,550	+				+0.1
864,550	+				-0.1
864,550	+				+0.8
864,551	-				+0.4
864,551	-				+0.8
864,551	-				+0.7
864,551	-				+0.9
864,551	-				-0.2
864,551	-				-1.8
864,551	-				+0.8
864,551	-				-0.1
864,551	-				+0.1
864,551	-				+0.5
864,551	-				+1.1
864,551	-				+1.0
864,551	-				+0.6
864,551	-				-0.2
864,552	+				-0.3
864,552	+				+0.4
864,552	+				+0.3
864,552	+				+0.1
864,552	+				+0.3
864,552	+				+0.1
864,553	-				+1.5
864,553	-				-1.1
864,553	-				-1.7
864,553	-				-1.1
864,553	-				+0.5
864,553	-				-0.5
864,554	+				-0.7
864,554	+				+0.1
864,559	-				-3.7
864,559	-				-0.0
864,559	-				-2.2
864,559	-				+0.4
864,559	-				+0.8
864,561	-				-1.1
864,561	-				-0.5
864,562	+				-1.1
864,562	+				-2.1
864,562	+				+0.1
864,568	-				+0.9
864,568	-				-0.6
864,568	-				+1.2
864,568	-				-1.2
864,568	-				+0.9
864,568	-				-0.7
864,568	-				+1.4
864,568	-				-0.5
864,568	-				-0.1
864,568	-				+0.8
864,568	-				-0.6
864,569	+				+0.0
864,569	+				+0.0
864,569	+				+1.6
864,585	-				+0.5
864,586	+				+0.4
864,591	-				-1.3
864,592	+				+0.6
864,814	+		MMJJ_RS04640	0.20	+0.7
864,834	+		MMJJ_RS04640	0.22	-0.8
864,961	+		MMJJ_RS04640	0.34	+1.4
864,987	+		MMJJ_RS04640	0.36	+0.8
864,998	-		MMJJ_RS04640	0.37	+0.7
865,022	-		MMJJ_RS04640	0.40	+0.5
865,071	-		MMJJ_RS04640	0.44	+0.5
865,078	-		MMJJ_RS04640	0.45	-0.9
865,078	-		MMJJ_RS04640	0.45	+0.2
865,079	+		MMJJ_RS04640	0.45	+0.5
865,079	+		MMJJ_RS04640	0.45	+0.1
865,079	+		MMJJ_RS04640	0.45	+1.1
865,079	+		MMJJ_RS04640	0.45	+0.7
865,081	+		MMJJ_RS04640	0.45	+0.4
865,081	+		MMJJ_RS04640	0.45	-0.1
865,081	+		MMJJ_RS04640	0.45	-0.5
865,088	-		MMJJ_RS04640	0.46	+0.7
865,114	-		MMJJ_RS04640	0.48	-0.1
865,115	+		MMJJ_RS04640	0.49	+0.9
865,125	-		MMJJ_RS04640	0.49	+0.1
865,139	-		MMJJ_RS04640	0.51	+0.5
865,139	-		MMJJ_RS04640	0.51	+0.3
865,140	+				+1.7
865,147	-		MMJJ_RS04640	0.52	+0.7
865,147	-		MMJJ_RS04640	0.52	-1.1
865,148	+		MMJJ_RS04640	0.52	+0.0
865,167	+		MMJJ_RS04640	0.53	+0.0
865,193	-		MMJJ_RS04640	0.56	+0.1
865,193	-		MMJJ_RS04640	0.56	+0.1
865,193	-		MMJJ_RS04640	0.56	+0.9
865,194	+		MMJJ_RS04640	0.56	-0.6
865,199	-		MMJJ_RS04640	0.57	+0.6
865,199	-		MMJJ_RS04640	0.57	-0.1
865,199	-		MMJJ_RS04640	0.57	-0.3
865,200	+		MMJJ_RS04640	0.57	+0.4
865,200	+		MMJJ_RS04640	0.57	+0.7
865,200	+		MMJJ_RS04640	0.57	+1.4
865,209	-		MMJJ_RS04640	0.57	+0.6
865,209	-		MMJJ_RS04640	0.57	+1.2
865,259	-		MMJJ_RS04640	0.62	-0.1
865,277	-		MMJJ_RS04640	0.64	-0.3
865,278	+		MMJJ_RS04640	0.64	-0.5
865,289	-		MMJJ_RS04640	0.65	-0.7
865,319	-		MMJJ_RS04640	0.68	-0.7
865,319	-		MMJJ_RS04640	0.68	+0.8
865,331	-		MMJJ_RS04640	0.69	+1.2
865,334	-		MMJJ_RS04640	0.69	+0.4
865,335	+		MMJJ_RS04640	0.69	+1.4
865,348	-		MMJJ_RS04640	0.71	-2.6
865,348	-		MMJJ_RS04640	0.71	+0.6
865,348	-		MMJJ_RS04640	0.71	+0.6
865,348	-		MMJJ_RS04640	0.71	+2.0
865,348	-		MMJJ_RS04640	0.71	+0.8
865,349	+		MMJJ_RS04640	0.71	-1.1
865,349	+		MMJJ_RS04640	0.71	-0.5
865,349	+		MMJJ_RS04640	0.71	-0.6
865,349	+		MMJJ_RS04640	0.71	+1.9
865,436	-		MMJJ_RS04640	0.79	+0.7
865,437	+		MMJJ_RS04640	0.79	+0.0
865,437	+		MMJJ_RS04640	0.79	-0.1
865,479	-		MMJJ_RS04640	0.83	-0.6
865,480	+		MMJJ_RS04640	0.83	+0.0
865,480	+		MMJJ_RS04640	0.83	-0.1
865,497	+		MMJJ_RS04640	0.85	+0.1
865,526	-		MMJJ_RS04640	0.88	+3.1
865,527	+		MMJJ_RS04640	0.88	+0.8
865,540	-		MMJJ_RS04640	0.89	+0.2
865,541	+		MMJJ_RS04640	0.89	+0.0
865,541	+		MMJJ_RS04640	0.89	+0.3
865,541	+		MMJJ_RS04640	0.89	-1.4
865,545	+		MMJJ_RS04640	0.89	-0.2
865,547	-		MMJJ_RS04640	0.90	+0.5
865,548	+		MMJJ_RS04640	0.90	+0.1
865,614	-				+0.9
865,615	+				-0.0
865,615	+				+1.1
865,623	-				+1.4
865,630	-				+0.2
865,630	-				-0.3
865,630	-				+1.2
865,630	-				-0.3
865,631	+				+0.6
865,631	+				+0.6
865,631	+				-0.7
865,631	+				-0.2
865,631	+				-0.6
865,632	-				+0.1
865,632	-				-0.2
865,632	-				-0.1
865,632	-				+0.3
865,633	+				+0.1
865,633	+				+0.6
865,633	+				-1.0
865,682	+				+1.7
865,687	-				-0.0
865,722	-				+0.8
865,758	-				-0.5
865,842	-				+0.6
865,874	-		MMJJ_RS04645	0.10	+0.1
865,892	-		MMJJ_RS04645	0.11	-0.2
865,905	-		MMJJ_RS04645	0.12	-0.8
865,906	+		MMJJ_RS04645	0.12	+0.7
865,944	-		MMJJ_RS04645	0.14	+1.3
865,944	-		MMJJ_RS04645	0.14	+0.6
865,945	+		MMJJ_RS04645	0.14	+0.9
865,946	-		MMJJ_RS04645	0.14	+0.2
865,947	+		MMJJ_RS04645	0.14	+0.9
865,995	-		MMJJ_RS04645	0.16	-0.9
865,995	-		MMJJ_RS04645	0.16	+0.2
865,996	+		MMJJ_RS04645	0.17	-1.1
865,996	+		MMJJ_RS04645	0.17	-0.3
865,996	+		MMJJ_RS04645	0.17	-1.4
866,018	-		MMJJ_RS04645	0.18	+0.2
866,019	+		MMJJ_RS04645	0.18	-0.8
866,060	-		MMJJ_RS04645	0.20	-1.2
866,061	+		MMJJ_RS04645	0.20	+2.0
866,061	+		MMJJ_RS04645	0.20	+0.8
866,079	-		MMJJ_RS04645	0.21	-1.2
866,079	-		MMJJ_RS04645	0.21	+0.4
866,110	-		MMJJ_RS04645	0.23	+0.9
866,186	+		MMJJ_RS04645	0.26	-1.4
866,241	+		MMJJ_RS04645	0.29	+1.5
866,289	-		MMJJ_RS04645	0.32	-0.2
866,371	-		MMJJ_RS04645	0.36	+0.2
866,371	-		MMJJ_RS04645	0.36	+1.3
866,372	+		MMJJ_RS04645	0.36	+0.7
866,372	+		MMJJ_RS04645	0.36	-0.4
866,373	-		MMJJ_RS04645	0.36	-0.5
866,373	-		MMJJ_RS04645	0.36	-0.1
866,374	+		MMJJ_RS04645	0.36	-1.3
866,374	+		MMJJ_RS04645	0.36	+0.3
866,405	+		MMJJ_RS04645	0.38	+0.4
866,440	+		MMJJ_RS04645	0.40	-1.1
866,445	+		MMJJ_RS04645	0.40	-0.9
866,446	-		MMJJ_RS04645	0.40	-0.1
866,446	-		MMJJ_RS04645	0.40	-2.1
866,446	-		MMJJ_RS04645	0.40	+0.8
866,447	+		MMJJ_RS04645	0.40	-0.7
866,447	+		MMJJ_RS04645	0.40	+0.0
866,450	+		MMJJ_RS04645	0.40	+0.7
866,450	+		MMJJ_RS04645	0.40	+0.2
866,494	+		MMJJ_RS04645	0.43	-0.4
866,512	+		MMJJ_RS04645	0.44	-0.2
866,523	+		MMJJ_RS04645	0.44	-1.3
866,542	-		MMJJ_RS04645	0.45	-0.8
866,542	-		MMJJ_RS04645	0.45	+1.8
866,542	-		MMJJ_RS04645	0.45	-0.7
866,543	+		MMJJ_RS04645	0.45	+0.1
866,578	-		MMJJ_RS04645	0.47	+0.3
866,578	-		MMJJ_RS04645	0.47	-1.9
866,578	-		MMJJ_RS04645	0.47	-1.2
866,578	-		MMJJ_RS04645	0.47	+1.0
866,579	+		MMJJ_RS04645	0.47	-1.7
866,579	+		MMJJ_RS04645	0.47	-0.2
866,580	-		MMJJ_RS04645	0.47	+1.3
866,588	-		MMJJ_RS04645	0.48	+1.0
866,588	-		MMJJ_RS04645	0.48	-0.8
866,605	+		MMJJ_RS04645	0.48	+1.4
866,641	+		MMJJ_RS04645	0.50	-0.5
866,641	+		MMJJ_RS04645	0.50	+0.5