Experiment: formate McAA B12 dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04575 and MMJJ_RS04580 are separated by 18 nucleotides MMJJ_RS04580 and MMJJ_RS04585 are separated by 151 nucleotides MMJJ_RS04585 and MMJJ_RS04590 are separated by 71 nucleotides MMJJ_RS04590 and MMJJ_RS04595 are separated by 16 nucleotides MMJJ_RS04595 and MMJJ_RS04600 are separated by 0 nucleotides
MMJJ_RS04575: MMJJ_RS04575 - DUF116 domain-containing protein, at 853,617 to 854,261
_RS04575
MMJJ_RS04580: MMJJ_RS04580 - 2-phosphosulfolactate phosphatase, at 854,280 to 855,026
_RS04580
MMJJ_RS04585: MMJJ_RS04585 - phenylacetate--CoA ligase, at 855,178 to 856,479
_RS04585
MMJJ_RS04590: MMJJ_RS04590 - 50S ribosomal protein L39e, at 856,551 to 856,706
_RS04590
MMJJ_RS04595: MMJJ_RS04595 - hypothetical protein, at 856,723 to 857,322
_RS04595
MMJJ_RS04600: MMJJ_RS04600 - DNA-binding protein, at 857,323 to 857,682
_RS04600
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 854.178 kb on - strand, within MMJJ_RS04575 at 854.179 kb on + strand, within MMJJ_RS04575 at 854.196 kb on - strand, within MMJJ_RS04575 at 854.206 kb on + strand at 854.208 kb on - strand at 854.226 kb on - strand at 854.227 kb on + strand at 854.227 kb on + strand at 854.315 kb on - strand at 854.350 kb on + strand at 854.374 kb on - strand, within MMJJ_RS04580 at 854.396 kb on - strand, within MMJJ_RS04580 at 854.397 kb on + strand, within MMJJ_RS04580 at 854.402 kb on + strand, within MMJJ_RS04580 at 854.422 kb on - strand, within MMJJ_RS04580 at 854.422 kb on - strand, within MMJJ_RS04580 at 854.422 kb on - strand, within MMJJ_RS04580 at 854.423 kb on + strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.429 kb on + strand, within MMJJ_RS04580 at 854.429 kb on + strand, within MMJJ_RS04580 at 854.429 kb on + strand, within MMJJ_RS04580 at 854.436 kb on + strand, within MMJJ_RS04580 at 854.436 kb on + strand, within MMJJ_RS04580 at 854.436 kb on + strand, within MMJJ_RS04580 at 854.457 kb on + strand, within MMJJ_RS04580 at 854.458 kb on - strand, within MMJJ_RS04580 at 854.458 kb on - strand, within MMJJ_RS04580 at 854.459 kb on + strand, within MMJJ_RS04580 at 854.537 kb on + strand, within MMJJ_RS04580 at 854.543 kb on + strand, within MMJJ_RS04580 at 854.586 kb on + strand, within MMJJ_RS04580 at 854.642 kb on - strand, within MMJJ_RS04580 at 854.643 kb on + strand, within MMJJ_RS04580 at 854.648 kb on + strand, within MMJJ_RS04580 at 854.661 kb on + strand, within MMJJ_RS04580 at 854.691 kb on - strand, within MMJJ_RS04580 at 854.722 kb on - strand, within MMJJ_RS04580 at 854.797 kb on + strand, within MMJJ_RS04580 at 854.893 kb on - strand at 854.894 kb on + strand, within MMJJ_RS04580 at 854.935 kb on + strand, within MMJJ_RS04580 at 854.958 kb on + strand at 854.958 kb on + strand at 854.958 kb on + strand at 855.030 kb on + strand at 855.039 kb on - strand at 855.039 kb on - strand at 855.041 kb on - strand at 855.041 kb on - strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.043 kb on - strand at 855.043 kb on - strand at 855.043 kb on - strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.048 kb on + strand at 855.060 kb on - strand at 855.061 kb on + strand at 855.061 kb on + strand at 855.061 kb on + strand at 855.065 kb on - strand at 855.065 kb on - strand at 855.065 kb on - strand at 855.066 kb on + strand at 855.066 kb on + strand at 855.074 kb on - strand at 855.075 kb on + strand at 855.075 kb on + strand at 855.076 kb on - strand at 855.077 kb on + strand at 855.077 kb on + strand at 855.086 kb on - strand at 855.107 kb on + strand at 855.131 kb on - strand at 855.131 kb on - strand at 855.131 kb on - strand at 855.139 kb on - strand at 855.175 kb on + strand at 855.190 kb on + strand at 855.228 kb on + strand at 855.243 kb on + strand at 855.243 kb on + strand at 855.275 kb on - strand at 855.283 kb on - strand at 855.283 kb on - strand at 855.284 kb on + strand at 855.327 kb on + strand, within MMJJ_RS04585 at 855.336 kb on + strand, within MMJJ_RS04585 at 855.346 kb on + strand, within MMJJ_RS04585 at 855.366 kb on + strand, within MMJJ_RS04585 at 855.473 kb on - strand, within MMJJ_RS04585 at 855.474 kb on + strand, within MMJJ_RS04585 at 855.528 kb on + strand, within MMJJ_RS04585 at 855.543 kb on + strand, within MMJJ_RS04585 at 855.543 kb on + strand, within MMJJ_RS04585 at 855.605 kb on - strand, within MMJJ_RS04585 at 855.610 kb on - strand, within MMJJ_RS04585 at 855.711 kb on + strand, within MMJJ_RS04585 at 855.794 kb on - strand, within MMJJ_RS04585 at 855.893 kb on - strand, within MMJJ_RS04585 at 855.943 kb on + strand, within MMJJ_RS04585 at 856.025 kb on - strand, within MMJJ_RS04585 at 856.025 kb on - strand, within MMJJ_RS04585 at 856.029 kb on - strand, within MMJJ_RS04585 at 856.038 kb on - strand, within MMJJ_RS04585 at 856.038 kb on - strand, within MMJJ_RS04585 at 856.039 kb on + strand, within MMJJ_RS04585 at 856.039 kb on + strand, within MMJJ_RS04585 at 856.062 kb on - strand, within MMJJ_RS04585 at 856.275 kb on + strand, within MMJJ_RS04585 at 856.294 kb on + strand, within MMJJ_RS04585 at 856.296 kb on + strand, within MMJJ_RS04585 at 856.365 kb on - strand at 856.366 kb on + strand at 856.406 kb on - strand at 856.417 kb on + strand at 856.417 kb on + strand at 856.441 kb on + strand at 856.478 kb on + strand at 856.491 kb on + strand at 856.725 kb on + strand at 856.769 kb on - strand at 856.769 kb on - strand at 856.882 kb on - strand, within MMJJ_RS04595 at 856.882 kb on - strand, within MMJJ_RS04595 at 857.018 kb on + strand, within MMJJ_RS04595 at 857.024 kb on - strand, within MMJJ_RS04595 at 857.060 kb on + strand, within MMJJ_RS04595 at 857.122 kb on - strand, within MMJJ_RS04595 at 857.222 kb on + strand, within MMJJ_RS04595 at 857.274 kb on - strand at 857.275 kb on + strand at 857.450 kb on + strand, within MMJJ_RS04600
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA B12 dropout remove 854,178 - MMJJ_RS04575 0.87 -0.2 854,179 + MMJJ_RS04575 0.87 +1.1 854,196 - MMJJ_RS04575 0.90 -1.3 854,206 + +0.8 854,208 - +0.5 854,226 - +0.6 854,227 + -0.5 854,227 + +1.3 854,315 - +1.4 854,350 + +0.3 854,374 - MMJJ_RS04580 0.13 +0.9 854,396 - MMJJ_RS04580 0.16 +0.3 854,397 + MMJJ_RS04580 0.16 +1.1 854,402 + MMJJ_RS04580 0.16 +0.6 854,422 - MMJJ_RS04580 0.19 -1.1 854,422 - MMJJ_RS04580 0.19 +0.8 854,422 - MMJJ_RS04580 0.19 +2.8 854,423 + MMJJ_RS04580 0.19 +0.4 854,424 - MMJJ_RS04580 0.19 -1.4 854,424 - MMJJ_RS04580 0.19 +0.5 854,424 - MMJJ_RS04580 0.19 +0.3 854,424 - MMJJ_RS04580 0.19 -0.3 854,424 - MMJJ_RS04580 0.19 +1.5 854,424 - MMJJ_RS04580 0.19 +0.9 854,424 - MMJJ_RS04580 0.19 +0.4 854,424 - MMJJ_RS04580 0.19 -0.2 854,425 + MMJJ_RS04580 0.19 +0.4 854,425 + MMJJ_RS04580 0.19 -1.9 854,425 + MMJJ_RS04580 0.19 +0.8 854,425 + MMJJ_RS04580 0.19 -0.2 854,425 + MMJJ_RS04580 0.19 -1.4 854,425 + MMJJ_RS04580 0.19 +0.4 854,425 + MMJJ_RS04580 0.19 +0.6 854,425 + MMJJ_RS04580 0.19 -0.1 854,425 + MMJJ_RS04580 0.19 +0.9 854,425 + MMJJ_RS04580 0.19 +0.1 854,426 - MMJJ_RS04580 0.20 +0.7 854,426 - MMJJ_RS04580 0.20 +0.5 854,426 - MMJJ_RS04580 0.20 +0.4 854,426 - MMJJ_RS04580 0.20 -1.6 854,426 - MMJJ_RS04580 0.20 +1.1 854,426 - MMJJ_RS04580 0.20 +1.0 854,426 - MMJJ_RS04580 0.20 -0.1 854,426 - MMJJ_RS04580 0.20 +0.0 854,426 - MMJJ_RS04580 0.20 -1.2 854,427 + MMJJ_RS04580 0.20 +1.6 854,427 + -0.6 854,427 + MMJJ_RS04580 0.20 -0.1 854,427 + MMJJ_RS04580 0.20 +1.7 854,427 + MMJJ_RS04580 0.20 +0.7 854,427 + MMJJ_RS04580 0.20 -0.3 854,427 + MMJJ_RS04580 0.20 +0.3 854,427 + MMJJ_RS04580 0.20 +1.3 854,427 + MMJJ_RS04580 0.20 -0.4 854,427 + MMJJ_RS04580 0.20 +0.6 854,427 + MMJJ_RS04580 0.20 -0.0 854,427 + MMJJ_RS04580 0.20 -2.1 854,429 + MMJJ_RS04580 0.20 +0.7 854,429 + MMJJ_RS04580 0.20 +1.2 854,429 + MMJJ_RS04580 0.20 -1.2 854,436 + MMJJ_RS04580 0.21 +1.3 854,436 + MMJJ_RS04580 0.21 +0.7 854,436 + MMJJ_RS04580 0.21 +1.1 854,457 + MMJJ_RS04580 0.24 +0.5 854,458 - MMJJ_RS04580 0.24 +0.4 854,458 - MMJJ_RS04580 0.24 -0.7 854,459 + MMJJ_RS04580 0.24 -1.1 854,537 + MMJJ_RS04580 0.34 -0.1 854,543 + MMJJ_RS04580 0.35 +1.5 854,586 + MMJJ_RS04580 0.41 +0.5 854,642 - MMJJ_RS04580 0.48 +1.1 854,643 + MMJJ_RS04580 0.49 -0.4 854,648 + MMJJ_RS04580 0.49 -0.7 854,661 + MMJJ_RS04580 0.51 +0.3 854,691 - MMJJ_RS04580 0.55 -2.1 854,722 - MMJJ_RS04580 0.59 -0.4 854,797 + MMJJ_RS04580 0.69 +0.7 854,893 - -0.8 854,894 + MMJJ_RS04580 0.82 -0.3 854,935 + MMJJ_RS04580 0.88 -0.7 854,958 + -0.1 854,958 + +2.1 854,958 + +0.3 855,030 + +0.8 855,039 - +0.1 855,039 - +0.4 855,041 - -0.8 855,041 - -0.7 855,042 + +0.8 855,042 + -2.5 855,042 + +0.5 855,042 + -0.8 855,042 + -0.0 855,042 + +0.7 855,043 - -1.1 855,043 - +0.1 855,043 - -0.1 855,044 + -0.0 855,044 + -0.8 855,044 + -0.3 855,048 + +0.0 855,060 - +1.5 855,061 + +0.6 855,061 + -0.2 855,061 + +0.8 855,065 - -1.1 855,065 - +0.9 855,065 - +0.5 855,066 + -0.4 855,066 + -2.1 855,074 - +0.5 855,075 + -0.3 855,075 + +0.5 855,076 - -0.1 855,077 + +0.9 855,077 + -1.1 855,086 - +0.3 855,107 + -0.5 855,131 - -0.4 855,131 - -0.7 855,131 - +0.0 855,139 - +0.6 855,175 + +0.2 855,190 + -0.5 855,228 + -0.9 855,243 + -0.9 855,243 + -0.5 855,275 - -0.1 855,283 - -0.4 855,283 - +0.2 855,284 + -0.8 855,327 + MMJJ_RS04585 0.11 -0.0 855,336 + MMJJ_RS04585 0.12 -1.4 855,346 + MMJJ_RS04585 0.13 +0.0 855,366 + MMJJ_RS04585 0.14 +0.3 855,473 - MMJJ_RS04585 0.23 -0.2 855,474 + MMJJ_RS04585 0.23 -0.4 855,528 + MMJJ_RS04585 0.27 -0.9 855,543 + MMJJ_RS04585 0.28 +1.3 855,543 + MMJJ_RS04585 0.28 +0.5 855,605 - MMJJ_RS04585 0.33 -0.3 855,610 - MMJJ_RS04585 0.33 +1.0 855,711 + MMJJ_RS04585 0.41 +0.5 855,794 - MMJJ_RS04585 0.47 +0.8 855,893 - MMJJ_RS04585 0.55 +0.6 855,943 + MMJJ_RS04585 0.59 +0.1 856,025 - MMJJ_RS04585 0.65 -0.5 856,025 - MMJJ_RS04585 0.65 +0.1 856,029 - MMJJ_RS04585 0.65 +1.4 856,038 - MMJJ_RS04585 0.66 -0.4 856,038 - MMJJ_RS04585 0.66 -0.1 856,039 + MMJJ_RS04585 0.66 -0.5 856,039 + MMJJ_RS04585 0.66 +1.7 856,062 - MMJJ_RS04585 0.68 -0.8 856,275 + MMJJ_RS04585 0.84 +1.4 856,294 + MMJJ_RS04585 0.86 +0.5 856,296 + MMJJ_RS04585 0.86 -0.0 856,365 - +0.4 856,366 + -0.5 856,406 - +0.1 856,417 + -0.4 856,417 + +0.6 856,441 + -0.5 856,478 + +1.1 856,491 + +0.8 856,725 + -0.7 856,769 - -2.6 856,769 - -1.8 856,882 - MMJJ_RS04595 0.27 -1.2 856,882 - MMJJ_RS04595 0.27 -1.4 857,018 + MMJJ_RS04595 0.49 -0.8 857,024 - MMJJ_RS04595 0.50 -1.5 857,060 + MMJJ_RS04595 0.56 -2.3 857,122 - MMJJ_RS04595 0.67 -0.7 857,222 + MMJJ_RS04595 0.83 -1.5 857,274 - -1.9 857,275 + -2.4 857,450 + MMJJ_RS04600 0.35 -1.1
Or see this region's nucleotide sequence