Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03015

Experiment: formate McAA B12 dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03010 and MMJJ_RS03015 are separated by 83 nucleotides MMJJ_RS03010: MMJJ_RS03010 - replication factor C small subunit, at 563,261 to 564,208 _RS03010 MMJJ_RS03015: MMJJ_RS03015 - Ig-like domain-containing protein, at 564,292 to 566,091 _RS03015 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 563.826 kb on + strand, within MMJJ_RS03010at 563.866 kb on + strand, within MMJJ_RS03010at 564.083 kb on + strand, within MMJJ_RS03010at 564.244 kb on - strandat 564.286 kb on + strandat 564.293 kb on - strandat 564.301 kb on - strandat 564.359 kb on + strandat 564.376 kb on - strandat 564.377 kb on + strandat 564.415 kb on + strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.421 kb on - strandat 564.422 kb on + strandat 564.428 kb on - strandat 564.428 kb on - strandat 564.462 kb on - strandat 564.462 kb on - strandat 564.463 kb on + strandat 564.536 kb on - strand, within MMJJ_RS03015at 564.536 kb on - strand, within MMJJ_RS03015at 564.537 kb on + strand, within MMJJ_RS03015at 564.537 kb on + strand, within MMJJ_RS03015at 564.617 kb on + strand, within MMJJ_RS03015at 564.617 kb on + strand, within MMJJ_RS03015at 564.641 kb on - strand, within MMJJ_RS03015at 564.667 kb on - strand, within MMJJ_RS03015at 564.668 kb on + strand, within MMJJ_RS03015at 564.696 kb on - strand, within MMJJ_RS03015at 564.697 kb on + strand, within MMJJ_RS03015at 564.711 kb on - strand, within MMJJ_RS03015at 564.712 kb on + strandat 564.712 kb on + strand, within MMJJ_RS03015at 564.771 kb on - strand, within MMJJ_RS03015at 564.772 kb on + strand, within MMJJ_RS03015at 564.772 kb on + strand, within MMJJ_RS03015at 564.787 kb on - strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.852 kb on + strand, within MMJJ_RS03015at 564.852 kb on + strand, within MMJJ_RS03015at 564.888 kb on + strand, within MMJJ_RS03015at 564.890 kb on - strand, within MMJJ_RS03015at 564.891 kb on + strand, within MMJJ_RS03015at 564.921 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.006 kb on + strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.008 kb on + strand, within MMJJ_RS03015at 565.008 kb on + strand, within MMJJ_RS03015at 565.038 kb on - strand, within MMJJ_RS03015at 565.290 kb on - strand, within MMJJ_RS03015at 565.290 kb on - strand, within MMJJ_RS03015at 565.533 kb on + strand, within MMJJ_RS03015at 565.533 kb on + strand, within MMJJ_RS03015at 565.533 kb on + strand, within MMJJ_RS03015at 565.539 kb on + strand, within MMJJ_RS03015at 565.539 kb on + strand, within MMJJ_RS03015at 565.576 kb on - strand, within MMJJ_RS03015at 565.576 kb on - strandat 565.576 kb on - strand, within MMJJ_RS03015at 565.590 kb on - strand, within MMJJ_RS03015at 565.590 kb on - strand, within MMJJ_RS03015

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA B12 dropout
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563,826 + MMJJ_RS03010 0.60 -1.7
563,866 + MMJJ_RS03010 0.64 -3.2
564,083 + MMJJ_RS03010 0.87 -0.7
564,244 - -0.8
564,286 + -0.3
564,293 - +0.5
564,301 - +0.4
564,359 + -0.2
564,376 - -0.1
564,377 + +1.2
564,415 + +0.4
564,416 - -0.0
564,416 - +0.1
564,416 - +0.4
564,416 - -0.3
564,416 - +0.6
564,416 - +0.7
564,416 - +0.0
564,416 - +0.9
564,417 + +0.9
564,417 + -0.7
564,417 + +0.2
564,417 + +0.2
564,417 + +0.2
564,417 + -0.4
564,421 - -0.7
564,422 + +0.1
564,428 - -0.9
564,428 - -0.4
564,462 - -3.5
564,462 - +0.3
564,463 + +0.2
564,536 - MMJJ_RS03015 0.14 +0.4
564,536 - MMJJ_RS03015 0.14 +1.4
564,537 + MMJJ_RS03015 0.14 +0.6
564,537 + MMJJ_RS03015 0.14 +0.3
564,617 + MMJJ_RS03015 0.18 -0.2
564,617 + MMJJ_RS03015 0.18 -0.1
564,641 - MMJJ_RS03015 0.19 -0.5
564,667 - MMJJ_RS03015 0.21 +0.3
564,668 + MMJJ_RS03015 0.21 +2.0
564,696 - MMJJ_RS03015 0.22 -0.2
564,697 + MMJJ_RS03015 0.23 +0.7
564,711 - MMJJ_RS03015 0.23 +0.6
564,712 + -0.2
564,712 + MMJJ_RS03015 0.23 +0.7
564,771 - MMJJ_RS03015 0.27 -0.2
564,772 + MMJJ_RS03015 0.27 +0.5
564,772 + MMJJ_RS03015 0.27 +0.1
564,787 - MMJJ_RS03015 0.28 -1.7
564,788 + MMJJ_RS03015 0.28 +0.8
564,788 + MMJJ_RS03015 0.28 -0.2
564,788 + MMJJ_RS03015 0.28 +0.1
564,852 + MMJJ_RS03015 0.31 -0.4
564,852 + MMJJ_RS03015 0.31 +0.6
564,888 + MMJJ_RS03015 0.33 +0.6
564,890 - MMJJ_RS03015 0.33 +0.7
564,891 + MMJJ_RS03015 0.33 +0.3
564,921 - MMJJ_RS03015 0.35 +0.5
565,005 - MMJJ_RS03015 0.40 +0.6
565,005 - MMJJ_RS03015 0.40 -0.2
565,005 - MMJJ_RS03015 0.40 -0.0
565,005 - MMJJ_RS03015 0.40 +0.1
565,006 + MMJJ_RS03015 0.40 -0.7
565,007 - MMJJ_RS03015 0.40 +0.6
565,007 - MMJJ_RS03015 0.40 +1.2
565,007 - MMJJ_RS03015 0.40 -0.3
565,007 - MMJJ_RS03015 0.40 +1.0
565,008 + MMJJ_RS03015 0.40 -1.0
565,008 + MMJJ_RS03015 0.40 -0.9
565,038 - MMJJ_RS03015 0.41 -1.2
565,290 - MMJJ_RS03015 0.55 +1.3
565,290 - MMJJ_RS03015 0.55 -0.0
565,533 + MMJJ_RS03015 0.69 -0.1
565,533 + MMJJ_RS03015 0.69 +0.6
565,533 + MMJJ_RS03015 0.69 -0.2
565,539 + MMJJ_RS03015 0.69 -1.5
565,539 + MMJJ_RS03015 0.69 -0.7
565,576 - MMJJ_RS03015 0.71 +1.0
565,576 - -0.7
565,576 - MMJJ_RS03015 0.71 +0.5
565,590 - MMJJ_RS03015 0.72 +0.9
565,590 - MMJJ_RS03015 0.72 -0.3

Or see this region's nucleotide sequence