Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02310

Experiment: formate McAA B12 dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02300 and MMJJ_RS02305 are separated by 39 nucleotidesMMJJ_RS02305 and MMJJ_RS02310 are separated by 194 nucleotidesMMJJ_RS02310 and MMJJ_RS02315 are separated by 88 nucleotidesMMJJ_RS02315 and MMJJ_RS02320 are separated by 119 nucleotides MMJJ_RS02300: MMJJ_RS02300 - hypothetical protein, at 435,005 to 435,463 _RS02300 MMJJ_RS02305: MMJJ_RS02305 - hypothetical protein, at 435,503 to 436,078 _RS02305 MMJJ_RS02310: MMJJ_RS02310 - ABC transporter ATP-binding protein, at 436,273 to 436,977 _RS02310 MMJJ_RS02315: MMJJ_RS02315 - magnesium chelatase, at 437,066 to 437,710 _RS02315 MMJJ_RS02320: MMJJ_RS02320 - VWA domain-containing protein, at 437,830 to 438,564 _RS02320 Position (kb) 436 437Strain fitness (log2 ratio) -2 -1 0 1 2 3at 435.314 kb on + strand, within MMJJ_RS02300at 435.314 kb on + strand, within MMJJ_RS02300at 435.338 kb on - strand, within MMJJ_RS02300at 435.339 kb on + strand, within MMJJ_RS02300at 435.339 kb on + strand, within MMJJ_RS02300at 435.339 kb on + strand, within MMJJ_RS02300at 435.358 kb on - strand, within MMJJ_RS02300at 435.359 kb on + strand, within MMJJ_RS02300at 435.359 kb on + strand, within MMJJ_RS02300at 435.359 kb on + strand, within MMJJ_RS02300at 435.359 kb on + strand, within MMJJ_RS02300at 435.367 kb on - strand, within MMJJ_RS02300at 435.396 kb on + strand, within MMJJ_RS02300at 435.455 kb on + strandat 435.488 kb on - strandat 435.489 kb on + strandat 435.491 kb on + strandat 435.491 kb on + strandat 435.491 kb on + strandat 435.526 kb on + strandat 435.526 kb on + strandat 435.602 kb on + strand, within MMJJ_RS02305at 435.603 kb on - strand, within MMJJ_RS02305at 435.603 kb on - strand, within MMJJ_RS02305at 435.603 kb on - strand, within MMJJ_RS02305at 435.603 kb on - strand, within MMJJ_RS02305at 435.604 kb on + strand, within MMJJ_RS02305at 435.604 kb on + strand, within MMJJ_RS02305at 435.604 kb on + strand, within MMJJ_RS02305at 435.604 kb on + strand, within MMJJ_RS02305at 435.604 kb on + strand, within MMJJ_RS02305at 435.604 kb on + strand, within MMJJ_RS02305at 435.690 kb on + strand, within MMJJ_RS02305at 435.714 kb on - strand, within MMJJ_RS02305at 435.714 kb on - strand, within MMJJ_RS02305at 435.714 kb on - strand, within MMJJ_RS02305at 435.789 kb on - strand, within MMJJ_RS02305at 435.790 kb on + strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.793 kb on - strand, within MMJJ_RS02305at 435.794 kb on + strand, within MMJJ_RS02305at 435.794 kb on + strandat 435.794 kb on + strand, within MMJJ_RS02305at 435.794 kb on + strand, within MMJJ_RS02305at 435.794 kb on + strand, within MMJJ_RS02305at 435.794 kb on + strand, within MMJJ_RS02305at 435.796 kb on - strand, within MMJJ_RS02305at 435.797 kb on + strand, within MMJJ_RS02305at 436.019 kb on + strand, within MMJJ_RS02305at 436.019 kb on + strand, within MMJJ_RS02305at 436.019 kb on + strand, within MMJJ_RS02305at 436.019 kb on + strandat 436.019 kb on + strand, within MMJJ_RS02305at 436.022 kb on + strandat 436.022 kb on + strandat 436.022 kb on + strandat 436.066 kb on - strandat 436.080 kb on - strandat 436.080 kb on - strandat 436.080 kb on - strandat 436.080 kb on - strandat 436.081 kb on + strandat 436.081 kb on + strandat 436.081 kb on + strandat 436.114 kb on - strandat 436.114 kb on - strandat 436.178 kb on + strandat 436.184 kb on + strandat 436.189 kb on - strandat 436.190 kb on + strandat 436.248 kb on + strandat 436.272 kb on - strandat 436.273 kb on + strandat 436.273 kb on + strandat 436.273 kb on + strandat 436.285 kb on + strandat 436.287 kb on + strandat 436.313 kb on + strandat 436.365 kb on + strand, within MMJJ_RS02310at 436.365 kb on + strand, within MMJJ_RS02310at 436.365 kb on + strand, within MMJJ_RS02310at 436.365 kb on + strand, within MMJJ_RS02310at 436.369 kb on + strand, within MMJJ_RS02310at 436.369 kb on + strand, within MMJJ_RS02310at 436.428 kb on - strand, within MMJJ_RS02310at 436.433 kb on - strand, within MMJJ_RS02310at 436.434 kb on + strand, within MMJJ_RS02310at 436.434 kb on + strand, within MMJJ_RS02310at 436.474 kb on + strand, within MMJJ_RS02310at 436.479 kb on - strand, within MMJJ_RS02310at 436.494 kb on - strand, within MMJJ_RS02310at 436.511 kb on - strand, within MMJJ_RS02310at 436.557 kb on - strand, within MMJJ_RS02310at 436.562 kb on - strand, within MMJJ_RS02310at 436.766 kb on - strand, within MMJJ_RS02310at 436.767 kb on + strand, within MMJJ_RS02310at 436.785 kb on - strand, within MMJJ_RS02310at 436.785 kb on - strand, within MMJJ_RS02310at 436.785 kb on - strand, within MMJJ_RS02310at 436.823 kb on - strand, within MMJJ_RS02310at 436.863 kb on - strand, within MMJJ_RS02310at 436.863 kb on - strand, within MMJJ_RS02310at 436.866 kb on - strand, within MMJJ_RS02310at 436.872 kb on - strand, within MMJJ_RS02310at 436.873 kb on + strand, within MMJJ_RS02310at 436.873 kb on + strand, within MMJJ_RS02310at 436.873 kb on + strand, within MMJJ_RS02310at 436.898 kb on + strand, within MMJJ_RS02310at 436.919 kb on - strandat 436.942 kb on + strandat 436.942 kb on + strandat 436.942 kb on + strandat 436.944 kb on + strandat 436.944 kb on + strandat 436.944 kb on + strandat 436.979 kb on + strandat 436.988 kb on + strandat 437.028 kb on - strandat 437.054 kb on - strandat 437.055 kb on + strandat 437.082 kb on + strandat 437.087 kb on + strandat 437.153 kb on + strand, within MMJJ_RS02315at 437.175 kb on - strand, within MMJJ_RS02315at 437.176 kb on + strand, within MMJJ_RS02315at 437.185 kb on - strand, within MMJJ_RS02315at 437.185 kb on - strand, within MMJJ_RS02315at 437.186 kb on + strand, within MMJJ_RS02315at 437.221 kb on + strand, within MMJJ_RS02315at 437.221 kb on + strand, within MMJJ_RS02315at 437.227 kb on - strand, within MMJJ_RS02315at 437.240 kb on - strand, within MMJJ_RS02315at 437.240 kb on - strand, within MMJJ_RS02315at 437.290 kb on + strand, within MMJJ_RS02315at 437.330 kb on - strand, within MMJJ_RS02315at 437.339 kb on - strand, within MMJJ_RS02315at 437.339 kb on - strand, within MMJJ_RS02315at 437.340 kb on + strand, within MMJJ_RS02315at 437.422 kb on + strand, within MMJJ_RS02315at 437.446 kb on + strand, within MMJJ_RS02315at 437.446 kb on + strand, within MMJJ_RS02315at 437.481 kb on - strand, within MMJJ_RS02315at 437.490 kb on - strand, within MMJJ_RS02315at 437.527 kb on - strand, within MMJJ_RS02315at 437.527 kb on - strand, within MMJJ_RS02315at 437.536 kb on - strand, within MMJJ_RS02315at 437.537 kb on + strand, within MMJJ_RS02315at 437.550 kb on - strand, within MMJJ_RS02315at 437.586 kb on - strand, within MMJJ_RS02315at 437.587 kb on + strand, within MMJJ_RS02315at 437.587 kb on + strand, within MMJJ_RS02315at 437.591 kb on + strand, within MMJJ_RS02315at 437.635 kb on - strand, within MMJJ_RS02315at 437.688 kb on - strandat 437.708 kb on - strandat 437.770 kb on + strandat 437.879 kb on - strandat 437.918 kb on + strand, within MMJJ_RS02320at 437.919 kb on - strand, within MMJJ_RS02320at 437.919 kb on - strand, within MMJJ_RS02320at 437.920 kb on + strand, within MMJJ_RS02320at 437.920 kb on + strand, within MMJJ_RS02320at 437.920 kb on + strand, within MMJJ_RS02320at 437.954 kb on - strand, within MMJJ_RS02320at 437.955 kb on + strand, within MMJJ_RS02320

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA B12 dropout
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435,314 + MMJJ_RS02300 0.67 +1.7
435,314 + MMJJ_RS02300 0.67 +0.1
435,338 - MMJJ_RS02300 0.73 +0.6
435,339 + MMJJ_RS02300 0.73 -1.0
435,339 + MMJJ_RS02300 0.73 -0.8
435,339 + MMJJ_RS02300 0.73 -0.2
435,358 - MMJJ_RS02300 0.77 -0.4
435,359 + MMJJ_RS02300 0.77 -0.8
435,359 + MMJJ_RS02300 0.77 +1.0
435,359 + MMJJ_RS02300 0.77 -1.5
435,359 + MMJJ_RS02300 0.77 -2.1
435,367 - MMJJ_RS02300 0.79 -0.1
435,396 + MMJJ_RS02300 0.85 +0.9
435,455 + +0.1
435,488 - +0.6
435,489 + +0.9
435,491 + +1.0
435,491 + -0.2
435,491 + +0.0
435,526 + -0.1
435,526 + +0.5
435,602 + MMJJ_RS02305 0.17 -0.4
435,603 - MMJJ_RS02305 0.17 -0.0
435,603 - MMJJ_RS02305 0.17 -0.0
435,603 - MMJJ_RS02305 0.17 -0.7
435,603 - MMJJ_RS02305 0.17 -0.0
435,604 + MMJJ_RS02305 0.18 +0.3
435,604 + MMJJ_RS02305 0.18 +0.2
435,604 + MMJJ_RS02305 0.18 +2.2
435,604 + MMJJ_RS02305 0.18 -0.2
435,604 + MMJJ_RS02305 0.18 -0.3
435,604 + MMJJ_RS02305 0.18 +0.0
435,690 + MMJJ_RS02305 0.32 +0.6
435,714 - MMJJ_RS02305 0.37 +2.1
435,714 - MMJJ_RS02305 0.37 +0.4
435,714 - MMJJ_RS02305 0.37 +1.2
435,789 - MMJJ_RS02305 0.50 +0.8
435,790 + MMJJ_RS02305 0.50 -0.1
435,793 - MMJJ_RS02305 0.50 -0.6
435,793 - MMJJ_RS02305 0.50 +0.1
435,793 - MMJJ_RS02305 0.50 +0.2
435,793 - MMJJ_RS02305 0.50 -0.4
435,793 - MMJJ_RS02305 0.50 -0.8
435,793 - MMJJ_RS02305 0.50 +1.4
435,793 - MMJJ_RS02305 0.50 +0.4
435,793 - MMJJ_RS02305 0.50 +0.2
435,793 - MMJJ_RS02305 0.50 +0.2
435,793 - MMJJ_RS02305 0.50 -0.6
435,794 + MMJJ_RS02305 0.51 +0.2
435,794 + +3.2
435,794 + MMJJ_RS02305 0.51 -1.5
435,794 + MMJJ_RS02305 0.51 -0.5
435,794 + MMJJ_RS02305 0.51 +0.3
435,794 + MMJJ_RS02305 0.51 +0.2
435,796 - MMJJ_RS02305 0.51 +0.1
435,797 + MMJJ_RS02305 0.51 +0.4
436,019 + MMJJ_RS02305 0.90 -0.6
436,019 + MMJJ_RS02305 0.90 -1.9
436,019 + MMJJ_RS02305 0.90 -1.3
436,019 + -1.5
436,019 + MMJJ_RS02305 0.90 +0.1
436,022 + +0.2
436,022 + +0.9
436,022 + -0.2
436,066 - +1.3
436,080 - -0.5
436,080 - -0.4
436,080 - +0.1
436,080 - +0.2
436,081 + -1.1
436,081 + +1.2
436,081 + +0.7
436,114 - +0.4
436,114 - +0.6
436,178 + +0.7
436,184 + +0.3
436,189 - +0.3
436,190 + -1.1
436,248 + -0.5
436,272 - -2.3
436,273 + +0.2
436,273 + +0.2
436,273 + -0.6
436,285 + +0.2
436,287 + +0.3
436,313 + +0.8
436,365 + MMJJ_RS02310 0.13 -1.4
436,365 + MMJJ_RS02310 0.13 +1.5
436,365 + MMJJ_RS02310 0.13 -0.5
436,365 + MMJJ_RS02310 0.13 +0.2
436,369 + MMJJ_RS02310 0.14 -0.4
436,369 + MMJJ_RS02310 0.14 +0.2
436,428 - MMJJ_RS02310 0.22 +0.1
436,433 - MMJJ_RS02310 0.23 +0.1
436,434 + MMJJ_RS02310 0.23 -0.3
436,434 + MMJJ_RS02310 0.23 +0.3
436,474 + MMJJ_RS02310 0.29 +0.6
436,479 - MMJJ_RS02310 0.29 +0.8
436,494 - MMJJ_RS02310 0.31 -2.1
436,511 - MMJJ_RS02310 0.34 +1.0
436,557 - MMJJ_RS02310 0.40 +0.2
436,562 - MMJJ_RS02310 0.41 +1.2
436,766 - MMJJ_RS02310 0.70 +0.8
436,767 + MMJJ_RS02310 0.70 +1.0
436,785 - MMJJ_RS02310 0.73 -0.0
436,785 - MMJJ_RS02310 0.73 -0.4
436,785 - MMJJ_RS02310 0.73 -0.8
436,823 - MMJJ_RS02310 0.78 -0.0
436,863 - MMJJ_RS02310 0.84 -0.7
436,863 - MMJJ_RS02310 0.84 +1.3
436,866 - MMJJ_RS02310 0.84 +0.4
436,872 - MMJJ_RS02310 0.85 +0.7
436,873 + MMJJ_RS02310 0.85 +0.8
436,873 + MMJJ_RS02310 0.85 -0.5
436,873 + MMJJ_RS02310 0.85 -0.2
436,898 + MMJJ_RS02310 0.89 +0.9
436,919 - -1.1
436,942 + +0.4
436,942 + -1.9
436,942 + +0.3
436,944 + -0.2
436,944 + -1.7
436,944 + +0.4
436,979 + -1.3
436,988 + -0.2
437,028 - +1.1
437,054 - +0.2
437,055 + +0.5
437,082 + -1.3
437,087 + -0.4
437,153 + MMJJ_RS02315 0.13 +0.3
437,175 - MMJJ_RS02315 0.17 +0.2
437,176 + MMJJ_RS02315 0.17 +1.1
437,185 - MMJJ_RS02315 0.18 -1.0
437,185 - MMJJ_RS02315 0.18 -1.0
437,186 + MMJJ_RS02315 0.19 +0.7
437,221 + MMJJ_RS02315 0.24 +0.5
437,221 + MMJJ_RS02315 0.24 -0.2
437,227 - MMJJ_RS02315 0.25 +2.4
437,240 - MMJJ_RS02315 0.27 -1.1
437,240 - MMJJ_RS02315 0.27 -0.3
437,290 + MMJJ_RS02315 0.35 +1.5
437,330 - MMJJ_RS02315 0.41 -0.1
437,339 - MMJJ_RS02315 0.42 +0.3
437,339 - MMJJ_RS02315 0.42 -2.0
437,340 + MMJJ_RS02315 0.42 +0.3
437,422 + MMJJ_RS02315 0.55 +0.7
437,446 + MMJJ_RS02315 0.59 -0.9
437,446 + MMJJ_RS02315 0.59 -2.0
437,481 - MMJJ_RS02315 0.64 +0.4
437,490 - MMJJ_RS02315 0.66 +1.0
437,527 - MMJJ_RS02315 0.71 +0.1
437,527 - MMJJ_RS02315 0.71 +0.7
437,536 - MMJJ_RS02315 0.73 -1.2
437,537 + MMJJ_RS02315 0.73 +0.5
437,550 - MMJJ_RS02315 0.75 -0.3
437,586 - MMJJ_RS02315 0.81 +0.0
437,587 + MMJJ_RS02315 0.81 +1.5
437,587 + MMJJ_RS02315 0.81 +0.9
437,591 + MMJJ_RS02315 0.81 -1.4
437,635 - MMJJ_RS02315 0.88 -1.9
437,688 - -0.1
437,708 - +0.6
437,770 + +0.2
437,879 - -1.3
437,918 + MMJJ_RS02320 0.12 +0.3
437,919 - MMJJ_RS02320 0.12 -0.2
437,919 - MMJJ_RS02320 0.12 -1.1
437,920 + MMJJ_RS02320 0.12 +0.4
437,920 + MMJJ_RS02320 0.12 +0.9
437,920 + MMJJ_RS02320 0.12 -0.9
437,954 - MMJJ_RS02320 0.17 +0.3
437,955 + MMJJ_RS02320 0.17 -0.9

Or see this region's nucleotide sequence