Strain Fitness in Azospirillum brasilense Sp245 around GFF2272

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11870 and GFF2272 are separated by 124 nucleotidesGFF2272 and GFF2273 are separated by 100 nucleotidesGFF2273 and AZOBR_RS11880 are separated by 19 nucleotides AZOBR_RS11870: AZOBR_RS11870 - peptidase, at 2,495,778 to 2,497,094 _RS11870 GFF2272 - gamma-glutamyltranspeptidase, at 2,497,219 to 2,498,248 GFF2272 GFF2273 - gamma-glutamyltranspeptidase, at 2,498,349 to 2,498,598 GFF2273 AZOBR_RS11880: AZOBR_RS11880 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,498,618 to 2,499,772 _RS11880 Position (kb) 2497 2498 2499Strain fitness (log2 ratio) -2 -1 0 1at 2496.274 kb on + strand, within AZOBR_RS11870at 2496.275 kb on - strand, within AZOBR_RS11870at 2496.320 kb on - strand, within AZOBR_RS11870at 2496.355 kb on + strand, within AZOBR_RS11870at 2496.587 kb on - strand, within AZOBR_RS11870at 2496.587 kb on - strand, within AZOBR_RS11870at 2497.001 kb on + strandat 2497.001 kb on + strandat 2497.002 kb on - strandat 2497.002 kb on - strandat 2497.274 kb on - strandat 2497.810 kb on + strand, within GFF2272at 2497.810 kb on + strand, within GFF2272at 2498.997 kb on - strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.237 kb on - strand, within AZOBR_RS11880

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,496,274 + AZOBR_RS11870 0.38 -1.7
2,496,275 - AZOBR_RS11870 0.38 -0.4
2,496,320 - AZOBR_RS11870 0.41 -0.0
2,496,355 + AZOBR_RS11870 0.44 -0.9
2,496,587 - AZOBR_RS11870 0.61 -1.9
2,496,587 - AZOBR_RS11870 0.61 -0.1
2,497,001 + +0.7
2,497,001 + -0.7
2,497,002 - -1.3
2,497,002 - +0.9
2,497,274 - -0.1
2,497,810 + GFF2272 0.57 +1.0
2,497,810 + GFF2272 0.57 +0.5
2,498,997 - AZOBR_RS11880 0.33 +0.0
2,499,236 + AZOBR_RS11880 0.54 +0.3
2,499,236 + AZOBR_RS11880 0.54 +0.1
2,499,237 - AZOBR_RS11880 0.54 +0.5

Or see this region's nucleotide sequence