Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03934

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00737 and CCNA_03934 are separated by 78 nucleotidesCCNA_03934 and CCNA_00738 are separated by 190 nucleotides CCNA_00737: CCNA_00737 - isoleucyl-tRNA synthetase, at 793,796 to 796,705 _00737 CCNA_03934: CCNA_03934 - hypothetical protein, at 796,784 to 796,828 _03934 CCNA_00738: CCNA_00738 - DegQ-family trypsin-like serine prototease, at 797,019 to 798,110 _00738 Position (kb) 796 797Strain fitness (log2 ratio) -2 -1 0 1 2 3at 796.686 kb on + strandat 796.709 kb on + strandat 796.754 kb on - strandat 796.829 kb on - strandat 796.832 kb on - strandat 796.838 kb on - strandat 796.845 kb on - strandat 796.862 kb on + strandat 796.866 kb on + strandat 796.874 kb on - strandat 796.876 kb on + strandat 796.878 kb on + strandat 796.881 kb on + strandat 796.907 kb on + strandat 796.917 kb on + strandat 796.925 kb on - strandat 796.941 kb on + strandat 796.968 kb on - strandat 796.999 kb on - strandat 797.045 kb on + strandat 797.069 kb on + strandat 797.074 kb on + strandat 797.085 kb on + strandat 797.092 kb on - strandat 797.101 kb on - strandat 797.121 kb on - strandat 797.123 kb on - strandat 797.125 kb on + strandat 797.135 kb on + strand, within CCNA_00738at 797.151 kb on + strand, within CCNA_00738at 797.151 kb on + strand, within CCNA_00738at 797.164 kb on - strand, within CCNA_00738at 797.244 kb on - strand, within CCNA_00738at 797.253 kb on - strand, within CCNA_00738at 797.258 kb on - strand, within CCNA_00738at 797.258 kb on - strand, within CCNA_00738at 797.274 kb on + strand, within CCNA_00738at 797.274 kb on + strand, within CCNA_00738at 797.274 kb on + strand, within CCNA_00738at 797.274 kb on + strand, within CCNA_00738at 797.274 kb on + strand, within CCNA_00738at 797.282 kb on - strand, within CCNA_00738at 797.282 kb on - strand, within CCNA_00738at 797.282 kb on - strand, within CCNA_00738at 797.282 kb on - strand, within CCNA_00738at 797.290 kb on + strand, within CCNA_00738at 797.300 kb on + strand, within CCNA_00738at 797.351 kb on - strand, within CCNA_00738at 797.394 kb on + strand, within CCNA_00738at 797.401 kb on + strand, within CCNA_00738at 797.401 kb on + strand, within CCNA_00738at 797.402 kb on - strand, within CCNA_00738at 797.407 kb on - strand, within CCNA_00738at 797.407 kb on - strand, within CCNA_00738at 797.438 kb on + strand, within CCNA_00738at 797.457 kb on + strand, within CCNA_00738at 797.457 kb on + strand, within CCNA_00738at 797.457 kb on + strand, within CCNA_00738at 797.457 kb on + strand, within CCNA_00738at 797.457 kb on + strandat 797.457 kb on + strand, within CCNA_00738at 797.465 kb on - strand, within CCNA_00738at 797.465 kb on - strand, within CCNA_00738at 797.482 kb on + strand, within CCNA_00738at 797.500 kb on + strand, within CCNA_00738at 797.520 kb on - strand, within CCNA_00738at 797.545 kb on + strand, within CCNA_00738at 797.550 kb on + strand, within CCNA_00738at 797.550 kb on + strand, within CCNA_00738at 797.553 kb on - strand, within CCNA_00738at 797.558 kb on - strand, within CCNA_00738at 797.565 kb on - strand, within CCNA_00738at 797.579 kb on - strand, within CCNA_00738at 797.582 kb on - strand, within CCNA_00738at 797.584 kb on + strand, within CCNA_00738at 797.592 kb on + strand, within CCNA_00738at 797.592 kb on + strand, within CCNA_00738at 797.600 kb on - strand, within CCNA_00738at 797.600 kb on - strand, within CCNA_00738at 797.600 kb on - strand, within CCNA_00738at 797.610 kb on + strand, within CCNA_00738at 797.662 kb on + strand, within CCNA_00738at 797.662 kb on - strand, within CCNA_00738at 797.681 kb on + strand, within CCNA_00738at 797.686 kb on + strand, within CCNA_00738at 797.686 kb on + strand, within CCNA_00738at 797.686 kb on + strand, within CCNA_00738at 797.686 kb on + strand, within CCNA_00738at 797.694 kb on - strand, within CCNA_00738at 797.694 kb on - strand, within CCNA_00738at 797.694 kb on - strand, within CCNA_00738at 797.694 kb on - strand, within CCNA_00738at 797.694 kb on - strand, within CCNA_00738at 797.694 kb on - strand, within CCNA_00738at 797.696 kb on + strand, within CCNA_00738at 797.696 kb on + strand, within CCNA_00738at 797.760 kb on + strand, within CCNA_00738at 797.775 kb on + strand, within CCNA_00738at 797.781 kb on + strand, within CCNA_00738at 797.782 kb on + strand, within CCNA_00738at 797.792 kb on + strand, within CCNA_00738at 797.802 kb on + strand, within CCNA_00738at 797.807 kb on + strand, within CCNA_00738at 797.807 kb on + strand, within CCNA_00738at 797.815 kb on - strand, within CCNA_00738at 797.817 kb on + strand, within CCNA_00738at 797.826 kb on - strand, within CCNA_00738

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol%
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796,686 + +3.5
796,709 + +1.3
796,754 - +1.4
796,829 - +1.6
796,832 - +1.4
796,838 - +1.7
796,845 - +1.7
796,862 + -0.1
796,866 + +0.3
796,874 - -1.6
796,876 + -1.0
796,878 + +0.6
796,881 + +0.8
796,907 + +1.2
796,917 + +0.4
796,925 - +0.9
796,941 + -0.6
796,968 - +0.1
796,999 - +1.5
797,045 + -0.2
797,069 + +0.3
797,074 + +0.9
797,085 + -1.2
797,092 - +0.8
797,101 - +1.4
797,121 - +1.0
797,123 - +1.2
797,125 + +0.0
797,135 + CCNA_00738 0.11 -0.6
797,151 + CCNA_00738 0.12 +0.0
797,151 + CCNA_00738 0.12 -1.5
797,164 - CCNA_00738 0.13 +0.8
797,244 - CCNA_00738 0.21 +0.6
797,253 - CCNA_00738 0.21 -0.0
797,258 - CCNA_00738 0.22 -0.1
797,258 - CCNA_00738 0.22 +1.7
797,274 + CCNA_00738 0.23 -0.5
797,274 + CCNA_00738 0.23 -2.1
797,274 + CCNA_00738 0.23 +0.3
797,274 + CCNA_00738 0.23 -0.7
797,274 + CCNA_00738 0.23 -0.9
797,282 - CCNA_00738 0.24 +0.3
797,282 - CCNA_00738 0.24 +0.3
797,282 - CCNA_00738 0.24 +1.3
797,282 - CCNA_00738 0.24 -0.2
797,290 + CCNA_00738 0.25 -0.2
797,300 + CCNA_00738 0.26 -1.4
797,351 - CCNA_00738 0.30 -1.7
797,394 + CCNA_00738 0.34 +1.9
797,401 + CCNA_00738 0.35 -0.3
797,401 + CCNA_00738 0.35 -0.4
797,402 - CCNA_00738 0.35 +0.5
797,407 - CCNA_00738 0.36 -0.5
797,407 - CCNA_00738 0.36 -0.5
797,438 + CCNA_00738 0.38 -0.6
797,457 + CCNA_00738 0.40 -0.1
797,457 + CCNA_00738 0.40 +0.4
797,457 + CCNA_00738 0.40 -0.1
797,457 + CCNA_00738 0.40 -0.5
797,457 + +1.2
797,457 + CCNA_00738 0.40 +0.0
797,465 - CCNA_00738 0.41 +1.4
797,465 - CCNA_00738 0.41 -0.5
797,482 + CCNA_00738 0.42 +0.9
797,500 + CCNA_00738 0.44 -1.1
797,520 - CCNA_00738 0.46 +1.2
797,545 + CCNA_00738 0.48 -0.5
797,550 + CCNA_00738 0.49 +1.1
797,550 + CCNA_00738 0.49 -0.8
797,553 - CCNA_00738 0.49 +0.2
797,558 - CCNA_00738 0.49 +0.2
797,565 - CCNA_00738 0.50 -0.6
797,579 - CCNA_00738 0.51 +0.6
797,582 - CCNA_00738 0.52 +0.2
797,584 + CCNA_00738 0.52 +0.0
797,592 + CCNA_00738 0.52 +1.5
797,592 + CCNA_00738 0.52 -0.2
797,600 - CCNA_00738 0.53 +1.6
797,600 - CCNA_00738 0.53 +1.0
797,600 - CCNA_00738 0.53 -0.6
797,610 + CCNA_00738 0.54 +0.3
797,662 + CCNA_00738 0.59 -1.1
797,662 - CCNA_00738 0.59 +1.3
797,681 + CCNA_00738 0.61 -1.2
797,686 + CCNA_00738 0.61 -0.6
797,686 + CCNA_00738 0.61 -2.2
797,686 + CCNA_00738 0.61 -1.2
797,686 + CCNA_00738 0.61 -1.3
797,694 - CCNA_00738 0.62 -0.4
797,694 - CCNA_00738 0.62 +0.9
797,694 - CCNA_00738 0.62 +1.2
797,694 - CCNA_00738 0.62 -0.5
797,694 - CCNA_00738 0.62 +1.1
797,694 - CCNA_00738 0.62 -0.4
797,696 + CCNA_00738 0.62 +1.1
797,696 + CCNA_00738 0.62 +1.5
797,760 + CCNA_00738 0.68 -0.2
797,775 + CCNA_00738 0.69 +1.9
797,781 + CCNA_00738 0.70 +0.0
797,782 + CCNA_00738 0.70 -1.6
797,792 + CCNA_00738 0.71 +1.8
797,802 + CCNA_00738 0.72 -0.8
797,807 + CCNA_00738 0.72 -1.2
797,807 + CCNA_00738 0.72 -1.7
797,815 - CCNA_00738 0.73 -0.3
797,817 + CCNA_00738 0.73 +0.7
797,826 - CCNA_00738 0.74 +2.9

Or see this region's nucleotide sequence