Experiment: PYE with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03763 and CCNA_03764 are separated by 81 nucleotides CCNA_03764 and CCNA_03765 are separated by 3 nucleotides CCNA_03765 and CCNA_03766 are separated by 23 nucleotides CCNA_03766 and CCNA_03767 are separated by 56 nucleotides
CCNA_03763: CCNA_03763 - deacetylase, at 3,931,762 to 3,932,676
_03763
CCNA_03764: CCNA_03764 - acyl-CoA thioesterase, at 3,932,758 to 3,933,612
_03764
CCNA_03765: CCNA_03765 - phosphohydrolase, MutT/nudix family protein, at 3,933,616 to 3,934,179
_03765
CCNA_03766: CCNA_03766 - 16S rRNA processing protein RimM, at 3,934,203 to 3,934,784
_03766
CCNA_03767: CCNA_03767 - SSU ribosomal protein S16P, at 3,934,841 to 3,935,338
_03767
Position (kb)
3933
3934
3935 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3932.640 kb on + strand at 3932.679 kb on - strand at 3932.683 kb on + strand at 3932.719 kb on + strand at 3932.741 kb on + strand at 3932.758 kb on + strand at 3932.761 kb on - strand at 3932.767 kb on + strand at 3932.767 kb on + strand at 3932.767 kb on + strand at 3932.775 kb on - strand at 3932.802 kb on + strand at 3932.825 kb on - strand at 3932.825 kb on - strand at 3932.895 kb on + strand, within CCNA_03764 at 3932.895 kb on + strand, within CCNA_03764 at 3932.913 kb on - strand, within CCNA_03764 at 3932.921 kb on + strand, within CCNA_03764 at 3932.927 kb on - strand, within CCNA_03764 at 3932.965 kb on + strand, within CCNA_03764 at 3932.976 kb on - strand, within CCNA_03764 at 3933.029 kb on + strand, within CCNA_03764 at 3933.053 kb on + strand, within CCNA_03764 at 3933.072 kb on + strand, within CCNA_03764 at 3933.102 kb on + strand, within CCNA_03764 at 3933.119 kb on + strand, within CCNA_03764 at 3933.162 kb on - strand, within CCNA_03764 at 3933.180 kb on + strand, within CCNA_03764 at 3933.296 kb on - strand, within CCNA_03764 at 3933.351 kb on - strand, within CCNA_03764 at 3933.351 kb on - strand, within CCNA_03764 at 3933.356 kb on - strand, within CCNA_03764 at 3933.361 kb on + strand, within CCNA_03764 at 3933.367 kb on + strand, within CCNA_03764 at 3933.369 kb on - strand, within CCNA_03764 at 3933.400 kb on - strand, within CCNA_03764 at 3933.402 kb on + strand, within CCNA_03764 at 3933.402 kb on + strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.438 kb on + strand, within CCNA_03764 at 3933.441 kb on - strand, within CCNA_03764 at 3933.496 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.503 kb on + strand, within CCNA_03764 at 3933.504 kb on + strand, within CCNA_03764 at 3933.521 kb on + strand, within CCNA_03764 at 3933.570 kb on + strand at 3933.573 kb on - strand at 3933.573 kb on - strand at 3933.614 kb on + strand at 3933.621 kb on - strand at 3933.622 kb on - strand at 3933.622 kb on - strand at 3933.668 kb on + strand at 3933.681 kb on - strand, within CCNA_03765 at 3933.700 kb on + strand, within CCNA_03765 at 3933.700 kb on + strand, within CCNA_03765 at 3933.708 kb on - strand, within CCNA_03765 at 3933.708 kb on - strand, within CCNA_03765 at 3933.735 kb on + strand, within CCNA_03765 at 3933.736 kb on - strand, within CCNA_03765 at 3933.772 kb on + strand, within CCNA_03765 at 3933.775 kb on - strand, within CCNA_03765 at 3933.799 kb on + strand, within CCNA_03765 at 3933.861 kb on + strand, within CCNA_03765 at 3933.861 kb on + strand, within CCNA_03765 at 3933.869 kb on - strand, within CCNA_03765 at 3933.921 kb on + strand, within CCNA_03765 at 3933.926 kb on + strand, within CCNA_03765 at 3933.970 kb on - strand, within CCNA_03765 at 3933.986 kb on - strand, within CCNA_03765 at 3934.043 kb on - strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.061 kb on + strand, within CCNA_03765 at 3934.062 kb on - strand, within CCNA_03765 at 3934.067 kb on - strand, within CCNA_03765 at 3934.069 kb on - strand, within CCNA_03765 at 3934.072 kb on + strand, within CCNA_03765 at 3934.074 kb on - strand, within CCNA_03765 at 3934.120 kb on + strand, within CCNA_03765 at 3934.201 kb on + strand at 3934.201 kb on + strand at 3934.209 kb on - strand at 3934.209 kb on - strand at 3934.228 kb on - strand at 3934.250 kb on - strand at 3934.250 kb on - strand at 3934.282 kb on + strand, within CCNA_03766 at 3934.301 kb on - strand at 3934.780 kb on + strand at 3934.790 kb on + strand at 3934.793 kb on - strand at 3934.793 kb on - strand at 3934.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol% remove 3,932,640 + +3.9 3,932,679 - +0.2 3,932,683 + +0.6 3,932,719 + -0.4 3,932,741 + +0.0 3,932,758 + +0.1 3,932,761 - -0.4 3,932,767 + -0.9 3,932,767 + -2.3 3,932,767 + +1.6 3,932,775 - +0.8 3,932,802 + +0.3 3,932,825 - -0.2 3,932,825 - +0.2 3,932,895 + CCNA_03764 0.16 +0.0 3,932,895 + CCNA_03764 0.16 -0.5 3,932,913 - CCNA_03764 0.18 -2.1 3,932,921 + CCNA_03764 0.19 +1.3 3,932,927 - CCNA_03764 0.20 -1.3 3,932,965 + CCNA_03764 0.24 +0.6 3,932,976 - CCNA_03764 0.25 +0.4 3,933,029 + CCNA_03764 0.32 +1.7 3,933,053 + CCNA_03764 0.35 -0.5 3,933,072 + CCNA_03764 0.37 +0.2 3,933,102 + CCNA_03764 0.40 +0.9 3,933,119 + CCNA_03764 0.42 +1.1 3,933,162 - CCNA_03764 0.47 +0.2 3,933,180 + CCNA_03764 0.49 +0.5 3,933,296 - CCNA_03764 0.63 +0.4 3,933,351 - CCNA_03764 0.69 +1.0 3,933,351 - CCNA_03764 0.69 +0.6 3,933,356 - CCNA_03764 0.70 -0.4 3,933,361 + CCNA_03764 0.71 +0.9 3,933,367 + CCNA_03764 0.71 +0.4 3,933,369 - CCNA_03764 0.71 +0.0 3,933,400 - CCNA_03764 0.75 +0.4 3,933,402 + CCNA_03764 0.75 +1.3 3,933,402 + CCNA_03764 0.75 +0.5 3,933,410 - CCNA_03764 0.76 -0.3 3,933,410 - CCNA_03764 0.76 -1.7 3,933,410 - CCNA_03764 0.76 +0.4 3,933,410 - CCNA_03764 0.76 -0.8 3,933,438 + CCNA_03764 0.80 +0.2 3,933,441 - CCNA_03764 0.80 +0.6 3,933,496 - CCNA_03764 0.86 -0.6 3,933,501 - CCNA_03764 0.87 +0.8 3,933,501 - CCNA_03764 0.87 +0.6 3,933,501 - CCNA_03764 0.87 +0.6 3,933,503 + CCNA_03764 0.87 +1.5 3,933,504 + CCNA_03764 0.87 -0.2 3,933,521 + CCNA_03764 0.89 +1.4 3,933,570 + -1.6 3,933,573 - -2.0 3,933,573 - +0.7 3,933,614 + +0.9 3,933,621 - +0.4 3,933,622 - -0.5 3,933,622 - +0.2 3,933,668 + +0.9 3,933,681 - CCNA_03765 0.12 -1.3 3,933,700 + CCNA_03765 0.15 +0.6 3,933,700 + CCNA_03765 0.15 +0.6 3,933,708 - CCNA_03765 0.16 +0.4 3,933,708 - CCNA_03765 0.16 +0.6 3,933,735 + CCNA_03765 0.21 +0.7 3,933,736 - CCNA_03765 0.21 +0.2 3,933,772 + CCNA_03765 0.28 +0.8 3,933,775 - CCNA_03765 0.28 +0.8 3,933,799 + CCNA_03765 0.32 +0.9 3,933,861 + CCNA_03765 0.43 -0.2 3,933,861 + CCNA_03765 0.43 +1.0 3,933,869 - CCNA_03765 0.45 +0.3 3,933,921 + CCNA_03765 0.54 -0.4 3,933,926 + CCNA_03765 0.55 +0.4 3,933,970 - CCNA_03765 0.63 +0.6 3,933,986 - CCNA_03765 0.66 +0.9 3,934,043 - CCNA_03765 0.76 +0.5 3,934,054 + CCNA_03765 0.78 -2.2 3,934,054 + CCNA_03765 0.78 -0.8 3,934,054 + CCNA_03765 0.78 -0.5 3,934,054 + CCNA_03765 0.78 -2.2 3,934,061 + CCNA_03765 0.79 +0.2 3,934,062 - CCNA_03765 0.79 -0.0 3,934,067 - CCNA_03765 0.80 +1.1 3,934,069 - CCNA_03765 0.80 +0.4 3,934,072 + CCNA_03765 0.81 -0.9 3,934,074 - CCNA_03765 0.81 +0.6 3,934,120 + CCNA_03765 0.89 -1.7 3,934,201 + -0.7 3,934,201 + -2.1 3,934,209 - -0.3 3,934,209 - +0.7 3,934,228 - +0.9 3,934,250 - +0.8 3,934,250 - +1.4 3,934,282 + CCNA_03766 0.14 -0.4 3,934,301 - +0.6 3,934,780 + -0.2 3,934,790 + +0.7 3,934,793 - +1.1 3,934,793 - +1.2 3,934,808 - +1.6
Or see this region's nucleotide sequence