Experiment: PYE with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02702 and CCNA_02703 overlap by 1 nucleotides CCNA_02703 and CCNA_02704 are separated by 335 nucleotides
CCNA_02702: CCNA_02702 - xanthine dehydrogenase small subunit, at 2,857,314 to 2,858,762
_02702
CCNA_02703: CCNA_02703 - 5-hydroxyisourate hydrolase, at 2,858,762 to 2,859,109
_02703
CCNA_02704: CCNA_02704 - NADP-dependent malic enzyme, at 2,859,445 to 2,861,721
_02704
Position (kb)
2858
2859
2860 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2857.768 kb on + strand, within CCNA_02702 at 2857.846 kb on + strand, within CCNA_02702 at 2857.846 kb on + strand, within CCNA_02702 at 2857.895 kb on + strand at 2857.900 kb on + strand, within CCNA_02702 at 2857.926 kb on - strand, within CCNA_02702 at 2857.928 kb on + strand, within CCNA_02702 at 2857.936 kb on - strand, within CCNA_02702 at 2857.936 kb on - strand, within CCNA_02702 at 2857.936 kb on - strand, within CCNA_02702 at 2857.948 kb on - strand, within CCNA_02702 at 2857.974 kb on - strand, within CCNA_02702 at 2857.976 kb on + strand, within CCNA_02702 at 2857.976 kb on + strand, within CCNA_02702 at 2857.997 kb on - strand, within CCNA_02702 at 2858.003 kb on - strand, within CCNA_02702 at 2858.006 kb on - strand, within CCNA_02702 at 2858.016 kb on - strand, within CCNA_02702 at 2858.043 kb on + strand, within CCNA_02702 at 2858.081 kb on + strand, within CCNA_02702 at 2858.089 kb on - strand, within CCNA_02702 at 2858.089 kb on - strand, within CCNA_02702 at 2858.089 kb on - strand, within CCNA_02702 at 2858.119 kb on + strand, within CCNA_02702 at 2858.119 kb on + strand, within CCNA_02702 at 2858.148 kb on - strand, within CCNA_02702 at 2858.219 kb on - strand, within CCNA_02702 at 2858.220 kb on - strand, within CCNA_02702 at 2858.230 kb on - strand, within CCNA_02702 at 2858.274 kb on - strand, within CCNA_02702 at 2858.289 kb on - strand, within CCNA_02702 at 2858.290 kb on + strand, within CCNA_02702 at 2858.311 kb on - strand, within CCNA_02702 at 2858.342 kb on - strand, within CCNA_02702 at 2858.370 kb on + strand, within CCNA_02702 at 2858.385 kb on + strand, within CCNA_02702 at 2858.393 kb on - strand, within CCNA_02702 at 2858.393 kb on - strand, within CCNA_02702 at 2858.454 kb on + strand, within CCNA_02702 at 2858.454 kb on + strand, within CCNA_02702 at 2858.462 kb on - strand, within CCNA_02702 at 2858.474 kb on - strand, within CCNA_02702 at 2858.474 kb on - strand, within CCNA_02702 at 2858.485 kb on - strand, within CCNA_02702 at 2858.485 kb on - strand, within CCNA_02702 at 2858.490 kb on - strand, within CCNA_02702 at 2858.547 kb on - strand, within CCNA_02702 at 2858.549 kb on - strand, within CCNA_02702 at 2858.564 kb on - strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.601 kb on + strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.609 kb on - strand, within CCNA_02702 at 2858.614 kb on - strand, within CCNA_02702 at 2858.644 kb on + strand at 2858.648 kb on - strand at 2858.688 kb on - strand at 2858.688 kb on - strand at 2858.688 kb on - strand at 2858.697 kb on + strand at 2858.718 kb on - strand at 2858.726 kb on - strand at 2858.814 kb on + strand, within CCNA_02703 at 2858.814 kb on + strand, within CCNA_02703 at 2858.822 kb on - strand, within CCNA_02703 at 2858.822 kb on - strand, within CCNA_02703 at 2858.822 kb on - strand, within CCNA_02703 at 2858.833 kb on - strand, within CCNA_02703 at 2858.862 kb on + strand, within CCNA_02703 at 2858.890 kb on + strand at 2858.898 kb on + strand, within CCNA_02703 at 2858.906 kb on + strand, within CCNA_02703 at 2858.951 kb on + strand, within CCNA_02703 at 2858.953 kb on - strand, within CCNA_02703 at 2858.999 kb on - strand, within CCNA_02703 at 2859.015 kb on - strand, within CCNA_02703 at 2859.080 kb on + strand at 2859.158 kb on + strand at 2859.163 kb on + strand at 2859.196 kb on - strand at 2859.342 kb on + strand at 2859.350 kb on - strand at 2859.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol% remove 2,857,768 + CCNA_02702 0.31 +0.5 2,857,846 + CCNA_02702 0.37 -0.7 2,857,846 + CCNA_02702 0.37 +1.9 2,857,895 + +0.9 2,857,900 + CCNA_02702 0.40 -0.4 2,857,926 - CCNA_02702 0.42 +1.5 2,857,928 + CCNA_02702 0.42 +0.5 2,857,936 - CCNA_02702 0.43 +1.0 2,857,936 - CCNA_02702 0.43 +1.5 2,857,936 - CCNA_02702 0.43 +1.5 2,857,948 - CCNA_02702 0.44 +0.3 2,857,974 - CCNA_02702 0.46 +0.6 2,857,976 + CCNA_02702 0.46 +0.9 2,857,976 + CCNA_02702 0.46 +0.3 2,857,997 - CCNA_02702 0.47 +0.6 2,858,003 - CCNA_02702 0.48 +1.5 2,858,006 - CCNA_02702 0.48 -0.9 2,858,016 - CCNA_02702 0.48 +0.6 2,858,043 + CCNA_02702 0.50 +1.3 2,858,081 + CCNA_02702 0.53 +3.0 2,858,089 - CCNA_02702 0.53 -0.3 2,858,089 - CCNA_02702 0.53 +0.6 2,858,089 - CCNA_02702 0.53 +0.1 2,858,119 + CCNA_02702 0.56 -1.4 2,858,119 + CCNA_02702 0.56 -1.4 2,858,148 - CCNA_02702 0.58 +1.2 2,858,219 - CCNA_02702 0.62 +0.3 2,858,220 - CCNA_02702 0.63 +0.9 2,858,230 - CCNA_02702 0.63 +1.0 2,858,274 - CCNA_02702 0.66 +1.1 2,858,289 - CCNA_02702 0.67 +0.1 2,858,290 + CCNA_02702 0.67 -0.4 2,858,311 - CCNA_02702 0.69 +0.3 2,858,342 - CCNA_02702 0.71 +0.4 2,858,370 + CCNA_02702 0.73 +0.6 2,858,385 + CCNA_02702 0.74 -1.1 2,858,393 - CCNA_02702 0.74 +0.8 2,858,393 - CCNA_02702 0.74 +0.4 2,858,454 + CCNA_02702 0.79 +1.1 2,858,454 + CCNA_02702 0.79 +0.6 2,858,462 - CCNA_02702 0.79 -0.1 2,858,474 - CCNA_02702 0.80 +2.2 2,858,474 - CCNA_02702 0.80 +1.0 2,858,485 - CCNA_02702 0.81 +0.6 2,858,485 - CCNA_02702 0.81 +0.3 2,858,490 - CCNA_02702 0.81 +0.7 2,858,547 - CCNA_02702 0.85 +1.7 2,858,549 - CCNA_02702 0.85 +1.6 2,858,564 - CCNA_02702 0.86 +1.1 2,858,601 + CCNA_02702 0.89 -2.2 2,858,601 + CCNA_02702 0.89 -0.7 2,858,601 + CCNA_02702 0.89 -1.5 2,858,601 + CCNA_02702 0.89 -0.5 2,858,609 - CCNA_02702 0.89 +0.9 2,858,609 - CCNA_02702 0.89 +1.0 2,858,609 - CCNA_02702 0.89 +1.3 2,858,614 - CCNA_02702 0.90 -0.2 2,858,644 + -0.9 2,858,648 - +0.8 2,858,688 - +0.1 2,858,688 - +1.5 2,858,688 - +0.0 2,858,697 + -0.0 2,858,718 - +1.0 2,858,726 - +0.9 2,858,814 + CCNA_02703 0.15 +0.1 2,858,814 + CCNA_02703 0.15 +0.1 2,858,822 - CCNA_02703 0.17 +0.5 2,858,822 - CCNA_02703 0.17 +0.9 2,858,822 - CCNA_02703 0.17 +1.9 2,858,833 - CCNA_02703 0.20 +0.8 2,858,862 + CCNA_02703 0.29 +0.1 2,858,890 + +3.5 2,858,898 + CCNA_02703 0.39 -0.6 2,858,906 + CCNA_02703 0.41 -0.2 2,858,951 + CCNA_02703 0.54 -0.5 2,858,953 - CCNA_02703 0.55 +0.2 2,858,999 - CCNA_02703 0.68 +1.5 2,859,015 - CCNA_02703 0.73 +0.5 2,859,080 + +1.5 2,859,158 + -2.0 2,859,163 + -1.6 2,859,196 - +1.8 2,859,342 + -0.5 2,859,350 - -1.6 2,859,428 + -0.1
Or see this region's nucleotide sequence