Experiment: PYE with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02329 and CCNA_02330 are separated by 27 nucleotides CCNA_02330 and CCNA_02331 overlap by 16 nucleotides CCNA_02331 and CCNA_02332 are separated by 135 nucleotides
CCNA_02329: CCNA_02329 - exodeoxyribonuclease VII large subunit, at 2,471,231 to 2,472,748
_02329
CCNA_02330: CCNA_02330 - hypothetical protein, at 2,472,776 to 2,472,991
_02330
CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827
_02331
CCNA_02332: CCNA_02332 - chemotaxis receiver protein cheYIII, at 2,473,963 to 2,474,481
_02332
Position (kb)
2472
2473 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2471.786 kb on + strand, within CCNA_02329 at 2471.794 kb on - strand, within CCNA_02329 at 2471.799 kb on - strand, within CCNA_02329 at 2471.850 kb on + strand, within CCNA_02329 at 2471.893 kb on + strand, within CCNA_02329 at 2471.915 kb on + strand, within CCNA_02329 at 2471.923 kb on - strand, within CCNA_02329 at 2471.923 kb on - strand, within CCNA_02329 at 2471.923 kb on - strand, within CCNA_02329 at 2471.953 kb on + strand, within CCNA_02329 at 2471.987 kb on - strand, within CCNA_02329 at 2471.987 kb on - strand, within CCNA_02329 at 2472.051 kb on - strand, within CCNA_02329 at 2472.116 kb on - strand, within CCNA_02329 at 2472.120 kb on + strand, within CCNA_02329 at 2472.120 kb on + strand, within CCNA_02329 at 2472.140 kb on + strand, within CCNA_02329 at 2472.189 kb on + strand, within CCNA_02329 at 2472.244 kb on - strand, within CCNA_02329 at 2472.247 kb on + strand, within CCNA_02329 at 2472.271 kb on - strand, within CCNA_02329 at 2472.305 kb on - strand, within CCNA_02329 at 2472.432 kb on + strand, within CCNA_02329 at 2472.682 kb on - strand at 2472.690 kb on + strand at 2472.698 kb on - strand at 2472.727 kb on + strand at 2472.742 kb on + strand at 2472.750 kb on - strand at 2472.750 kb on - strand at 2472.813 kb on + strand, within CCNA_02330 at 2472.834 kb on - strand, within CCNA_02330 at 2472.853 kb on + strand, within CCNA_02330 at 2472.872 kb on + strand, within CCNA_02330 at 2472.911 kb on + strand, within CCNA_02330 at 2472.921 kb on + strand, within CCNA_02330 at 2472.943 kb on + strand, within CCNA_02330 at 2472.943 kb on + strand, within CCNA_02330 at 2472.944 kb on + strand, within CCNA_02330 at 2472.951 kb on - strand, within CCNA_02330 at 2472.967 kb on + strand, within CCNA_02330 at 2472.975 kb on - strand at 2473.006 kb on - strand at 2473.011 kb on - strand at 2473.011 kb on - strand at 2473.011 kb on - strand at 2473.032 kb on - strand at 2473.033 kb on - strand at 2473.105 kb on + strand, within CCNA_02331 at 2473.136 kb on + strand, within CCNA_02331 at 2473.145 kb on + strand, within CCNA_02331 at 2473.145 kb on + strand, within CCNA_02331 at 2473.153 kb on - strand, within CCNA_02331 at 2473.238 kb on - strand, within CCNA_02331 at 2473.310 kb on + strand, within CCNA_02331 at 2473.310 kb on + strand, within CCNA_02331 at 2473.323 kb on - strand, within CCNA_02331 at 2473.500 kb on - strand, within CCNA_02331 at 2473.513 kb on + strand, within CCNA_02331 at 2473.607 kb on + strand, within CCNA_02331 at 2473.627 kb on + strand, within CCNA_02331 at 2473.635 kb on - strand, within CCNA_02331 at 2473.651 kb on - strand, within CCNA_02331 at 2473.747 kb on + strand at 2473.755 kb on - strand at 2473.755 kb on - strand at 2473.795 kb on + strand at 2473.800 kb on + strand at 2473.805 kb on + strand at 2473.829 kb on + strand at 2473.914 kb on - strand at 2473.943 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol% remove 2,471,786 + CCNA_02329 0.37 -0.4 2,471,794 - CCNA_02329 0.37 -0.4 2,471,799 - CCNA_02329 0.37 -0.1 2,471,850 + CCNA_02329 0.41 -0.5 2,471,893 + CCNA_02329 0.44 +1.3 2,471,915 + CCNA_02329 0.45 -2.5 2,471,923 - CCNA_02329 0.46 -1.1 2,471,923 - CCNA_02329 0.46 +1.4 2,471,923 - CCNA_02329 0.46 -0.3 2,471,953 + CCNA_02329 0.48 -1.3 2,471,987 - CCNA_02329 0.50 -0.8 2,471,987 - CCNA_02329 0.50 +0.9 2,472,051 - CCNA_02329 0.54 -1.2 2,472,116 - CCNA_02329 0.58 -1.7 2,472,120 + CCNA_02329 0.59 -1.1 2,472,120 + CCNA_02329 0.59 +0.3 2,472,140 + CCNA_02329 0.60 -0.7 2,472,189 + CCNA_02329 0.63 -2.8 2,472,244 - CCNA_02329 0.67 -1.5 2,472,247 + CCNA_02329 0.67 +0.3 2,472,271 - CCNA_02329 0.69 -0.8 2,472,305 - CCNA_02329 0.71 +0.6 2,472,432 + CCNA_02329 0.79 +0.1 2,472,682 - +0.9 2,472,690 + +1.1 2,472,698 - -0.8 2,472,727 + +0.6 2,472,742 + -0.2 2,472,750 - +0.9 2,472,750 - +0.1 2,472,813 + CCNA_02330 0.17 +1.1 2,472,834 - CCNA_02330 0.27 -1.3 2,472,853 + CCNA_02330 0.36 +0.7 2,472,872 + CCNA_02330 0.44 +1.7 2,472,911 + CCNA_02330 0.62 +1.8 2,472,921 + CCNA_02330 0.67 +0.9 2,472,943 + CCNA_02330 0.77 +1.5 2,472,943 + CCNA_02330 0.77 +1.4 2,472,944 + CCNA_02330 0.78 +1.8 2,472,951 - CCNA_02330 0.81 -0.2 2,472,967 + CCNA_02330 0.88 +2.0 2,472,975 - -1.2 2,473,006 - -0.7 2,473,011 - +0.4 2,473,011 - -0.7 2,473,011 - -0.8 2,473,032 - -2.0 2,473,033 - -1.0 2,473,105 + CCNA_02331 0.15 +0.6 2,473,136 + CCNA_02331 0.19 +0.0 2,473,145 + CCNA_02331 0.20 +1.1 2,473,145 + CCNA_02331 0.20 +1.6 2,473,153 - CCNA_02331 0.21 -0.1 2,473,238 - CCNA_02331 0.31 -0.6 2,473,310 + CCNA_02331 0.39 +1.4 2,473,310 + CCNA_02331 0.39 -0.0 2,473,323 - CCNA_02331 0.41 +0.4 2,473,500 - CCNA_02331 0.62 +0.3 2,473,513 + CCNA_02331 0.63 +1.1 2,473,607 + CCNA_02331 0.74 -0.1 2,473,627 + CCNA_02331 0.76 -0.4 2,473,635 - CCNA_02331 0.77 +0.1 2,473,651 - CCNA_02331 0.79 -1.5 2,473,747 + -0.7 2,473,755 - -0.4 2,473,755 - -1.0 2,473,795 + -0.2 2,473,800 + +0.6 2,473,805 + +0.3 2,473,829 + -2.3 2,473,914 - -1.0 2,473,943 + +0.9
Or see this region's nucleotide sequence