Experiment: PYE with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01739 and CCNA_01740 are separated by 13 nucleotides CCNA_01740 and CCNA_01741 are separated by 14 nucleotides CCNA_01741 and CCNA_01742 are separated by 268 nucleotides CCNA_01742 and CCNA_01743 overlap by 26 nucleotides
CCNA_01739: CCNA_01739 - LSU ribosomal protein L9P, at 1,869,268 to 1,869,852
_01739
CCNA_01740: CCNA_01740 - SSU ribosomal protein S18P, at 1,869,866 to 1,870,144
_01740
CCNA_01741: CCNA_01741 - SSU ribosomal protein S6P, at 1,870,159 to 1,870,539
_01741
CCNA_01742: CCNA_01742 - hypothetical protein, at 1,870,808 to 1,871,467
_01742
CCNA_01743: CCNA_01743 - sterol desaturase family protein, at 1,871,442 to 1,872,251
_01743
Position (kb)
1870
1871 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.273 kb on - strand at 1869.327 kb on - strand, within CCNA_01739 at 1869.431 kb on - strand, within CCNA_01739 at 1869.431 kb on - strand, within CCNA_01739 at 1869.432 kb on - strand, within CCNA_01739 at 1869.454 kb on - strand, within CCNA_01739 at 1869.487 kb on - strand, within CCNA_01739 at 1869.632 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.642 kb on - strand, within CCNA_01739 at 1869.747 kb on - strand, within CCNA_01739 at 1869.752 kb on - strand, within CCNA_01739 at 1869.884 kb on - strand at 1870.778 kb on + strand at 1870.778 kb on + strand at 1870.786 kb on - strand at 1870.786 kb on - strand at 1870.818 kb on + strand at 1870.826 kb on - strand at 1870.870 kb on + strand at 1870.870 kb on + strand at 1870.946 kb on + strand, within CCNA_01742 at 1870.946 kb on + strand, within CCNA_01742 at 1870.954 kb on - strand, within CCNA_01742 at 1870.954 kb on - strand, within CCNA_01742 at 1871.046 kb on - strand, within CCNA_01742 at 1871.050 kb on + strand, within CCNA_01742 at 1871.064 kb on + strand, within CCNA_01742 at 1871.079 kb on + strand, within CCNA_01742 at 1871.087 kb on - strand, within CCNA_01742 at 1871.087 kb on - strand, within CCNA_01742 at 1871.141 kb on - strand, within CCNA_01742 at 1871.194 kb on + strand, within CCNA_01742 at 1871.261 kb on + strand, within CCNA_01742 at 1871.298 kb on + strand, within CCNA_01742 at 1871.339 kb on + strand, within CCNA_01742 at 1871.347 kb on - strand, within CCNA_01742 at 1871.370 kb on + strand, within CCNA_01742 at 1871.440 kb on + strand at 1871.474 kb on + strand at 1871.476 kb on + strand at 1871.484 kb on - strand at 1871.518 kb on + strand at 1871.538 kb on + strand, within CCNA_01743
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol% remove 1,869,273 - +2.7 1,869,273 - +2.7 1,869,273 - +2.9 1,869,273 - +2.7 1,869,327 - CCNA_01739 0.10 +1.9 1,869,431 - CCNA_01739 0.28 +3.3 1,869,431 - CCNA_01739 0.28 +1.9 1,869,432 - CCNA_01739 0.28 +1.3 1,869,454 - CCNA_01739 0.32 +2.2 1,869,487 - CCNA_01739 0.37 +2.3 1,869,632 - CCNA_01739 0.62 +2.0 1,869,642 - CCNA_01739 0.64 +2.7 1,869,642 - CCNA_01739 0.64 +2.1 1,869,642 - CCNA_01739 0.64 +2.8 1,869,747 - CCNA_01739 0.82 +2.7 1,869,752 - CCNA_01739 0.83 +2.1 1,869,884 - +2.8 1,870,778 + -0.6 1,870,778 + +1.1 1,870,786 - -0.4 1,870,786 - +0.8 1,870,818 + +2.1 1,870,826 - -1.8 1,870,870 + +1.9 1,870,870 + +1.9 1,870,946 + CCNA_01742 0.21 +2.0 1,870,946 + CCNA_01742 0.21 +2.5 1,870,954 - CCNA_01742 0.22 -1.1 1,870,954 - CCNA_01742 0.22 -0.4 1,871,046 - CCNA_01742 0.36 -0.9 1,871,050 + CCNA_01742 0.37 +2.2 1,871,064 + CCNA_01742 0.39 +1.0 1,871,079 + CCNA_01742 0.41 +1.9 1,871,087 - CCNA_01742 0.42 +0.9 1,871,087 - CCNA_01742 0.42 -1.3 1,871,141 - CCNA_01742 0.50 +1.9 1,871,194 + CCNA_01742 0.58 +2.0 1,871,261 + CCNA_01742 0.69 +2.2 1,871,298 + CCNA_01742 0.74 +2.2 1,871,339 + CCNA_01742 0.80 +1.8 1,871,347 - CCNA_01742 0.82 -0.2 1,871,370 + CCNA_01742 0.85 +2.1 1,871,440 + +2.0 1,871,474 + +1.5 1,871,476 + -0.4 1,871,484 - -1.1 1,871,518 + -0.2 1,871,538 + CCNA_01743 0.12 -1.0
Or see this region's nucleotide sequence