Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01336

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Dimethyl Sulfoxide 5 vol%
1,447,838	-		CCNA_01335	0.13	+1.7
1,447,885	+				+0.1
1,447,888	-		CCNA_01335	0.18	-0.7
1,447,888	-		CCNA_01335	0.18	-0.1
1,447,888	-		CCNA_01335	0.18	-0.7
1,447,893	-		CCNA_01335	0.19	-0.3
1,447,927	-		CCNA_01335	0.22	-0.8
1,447,941	-		CCNA_01335	0.24	+0.2
1,447,960	-		CCNA_01335	0.26	+0.5
1,447,998	-		CCNA_01335	0.30	+1.3
1,448,010	+		CCNA_01335	0.31	+1.5
1,448,010	+		CCNA_01335	0.31	-0.6
1,448,055	+		CCNA_01335	0.36	-1.5
1,448,063	-		CCNA_01335	0.37	+1.3
1,448,063	-		CCNA_01335	0.37	+1.6
1,448,063	-		CCNA_01335	0.37	-0.0
1,448,065	+		CCNA_01335	0.37	+3.3
1,448,080	-		CCNA_01335	0.39	-0.0
1,448,100	+		CCNA_01335	0.41	+0.1
1,448,108	-		CCNA_01335	0.42	-0.6
1,448,163	-		CCNA_01335	0.48	+0.0
1,448,163	-		CCNA_01335	0.48	-0.4
1,448,228	+		CCNA_01335	0.55	+1.9
1,448,229	-		CCNA_01335	0.55	+1.1
1,448,229	-		CCNA_01335	0.55	+0.4
1,448,233	+		CCNA_01335	0.56	-0.1
1,448,233	+		CCNA_01335	0.56	-1.8
1,448,233	+		CCNA_01335	0.56	-1.8
1,448,233	+		CCNA_01335	0.56	+0.9
1,448,233	+		CCNA_01335	0.56	+0.3
1,448,233	+		CCNA_01335	0.56	+0.6
1,448,233	+		CCNA_01335	0.56	-2.0
1,448,233	+		CCNA_01335	0.56	-1.0
1,448,241	-		CCNA_01335	0.57	+0.4
1,448,241	-		CCNA_01335	0.57	-1.3
1,448,241	-		CCNA_01335	0.57	+1.8
1,448,241	-		CCNA_01335	0.57	-1.3
1,448,241	-		CCNA_01335	0.57	+0.5
1,448,241	-		CCNA_01335	0.57	+1.2
1,448,278	+		CCNA_01335	0.61	-0.3
1,448,287	-		CCNA_01335	0.62	+1.0
1,448,296	+		CCNA_01335	0.63	-0.6
1,448,373	-		CCNA_01335	0.71	+0.1
1,448,373	-		CCNA_01335	0.71	-0.9
1,448,391	+		CCNA_01335	0.73	+1.0
1,448,399	-		CCNA_01335	0.74	-0.4
1,448,409	+		CCNA_01335	0.75	-0.6
1,448,417	-		CCNA_01335	0.76	+0.4
1,448,422	-		CCNA_01335	0.76	-0.2
1,448,455	-		CCNA_01335	0.80	+0.3
1,448,482	+		CCNA_01335	0.83	-2.4
1,448,482	+		CCNA_01335	0.83	-0.1
1,448,490	-		CCNA_01335	0.84	+0.9
1,448,490	-		CCNA_01335	0.84	+0.2
1,448,501	-		CCNA_01335	0.85	-2.1
1,448,511	-		CCNA_01335	0.86	-0.1
1,448,612	+				-0.9
1,448,653	-				+0.3
1,448,681	+				+1.2
1,448,681	+				+1.3
1,448,717	-				+0.3
1,448,718	-				-0.3
1,448,718	-				-0.4
1,448,754	-				+0.1
1,448,798	-				-0.6
1,448,813	+				+0.9
1,448,844	-				-1.1
1,448,849	+				-2.2
1,448,849	+				-0.6
1,448,849	+				-0.3
1,448,850	-				+0.2
1,448,857	-				-1.6
1,448,985	-		CCNA_01336	0.14	+0.2
1,449,049	+		CCNA_01336	0.19	+0.6
1,449,091	+		CCNA_01336	0.23	-1.0
1,449,138	+		CCNA_01336	0.27	-1.9
1,449,171	-		CCNA_01336	0.29	-0.6
1,449,191	-		CCNA_01336	0.31	-0.6
1,449,191	-		CCNA_01336	0.31	-0.8
1,449,217	+		CCNA_01336	0.33	-1.9
1,449,217	+		CCNA_01336	0.33	-0.7
1,449,251	+		CCNA_01336	0.36	-2.2
1,449,281	-		CCNA_01336	0.38	-1.4
1,449,286	-		CCNA_01336	0.39	-1.1
1,449,291	-		CCNA_01336	0.39	-2.4
1,449,291	-		CCNA_01336	0.39	+0.4
1,449,291	-		CCNA_01336	0.39	+1.1
1,449,314	+		CCNA_01336	0.41	+0.3
1,449,322	-		CCNA_01336	0.42	+0.2
1,449,322	-		CCNA_01336	0.42	-1.6
1,449,324	+		CCNA_01336	0.42	-2.8
1,449,336	-		CCNA_01336	0.43	-1.7
1,449,385	+		CCNA_01336	0.47	+0.2
1,449,385	+		CCNA_01336	0.47	+0.6
1,449,391	+		CCNA_01336	0.47	-0.6
1,449,414	+		CCNA_01336	0.49	-1.3
1,449,414	+		CCNA_01336	0.49	-1.1
1,449,422	-		CCNA_01336	0.50	-0.1
1,449,455	-		CCNA_01336	0.52	+0.2
1,449,489	+		CCNA_01336	0.55	-1.5
1,449,490	-				+0.4
1,449,493	+		CCNA_01336	0.56	+1.1
1,449,563	+		CCNA_01336	0.61	-0.2
1,449,563	+		CCNA_01336	0.61	+1.3
1,449,563	+		CCNA_01336	0.61	-0.5
1,449,571	-		CCNA_01336	0.62	-1.1
1,449,582	-		CCNA_01336	0.63	-1.3
1,449,636	+		CCNA_01336	0.67	-0.8
1,449,673	+		CCNA_01336	0.70	-0.6
1,449,681	-		CCNA_01336	0.71	-0.9
1,449,689	+		CCNA_01336	0.71	-0.9
1,449,771	-		CCNA_01336	0.78	-0.3
1,449,855	+		CCNA_01336	0.85	-1.2
1,449,863	-		CCNA_01336	0.86	-0.6
1,449,863	-		CCNA_01336	0.86	+0.1
1,449,872	-		CCNA_01336	0.86	-0.3
1,449,935	+				-0.4
1,449,935	+				+0.8
1,449,945	+				+0.7
1,449,947	+				+0.6
1,449,953	-				+1.1
1,449,967	+				-1.1
1,449,970	-				+0.4
1,449,973	+				-0.5
1,450,017	-				-3.4
1,450,017	-				-1.1
1,450,083	+				+0.0
1,450,101	+				+1.0
1,450,101	+				-0.1
1,450,191	-				-1.5
1,450,222	+				+1.4
1,450,257	+				-1.2
1,450,257	+				+0.7
1,450,316	+		CCNA_01337	0.13	+2.4
1,450,337	+		CCNA_01337	0.14	-0.1
1,450,345	-		CCNA_01337	0.15	-0.7
1,450,345	-		CCNA_01337	0.15	+2.4
1,450,351	+		CCNA_01337	0.15	+1.2
1,450,352	+		CCNA_01337	0.15	-0.3
1,450,352	+		CCNA_01337	0.15	-1.2
1,450,352	+		CCNA_01337	0.15	-0.2
1,450,360	-		CCNA_01337	0.15	+1.4
1,450,581	+		CCNA_01337	0.29	-0.1
1,450,626	+		CCNA_01337	0.32	-0.2
1,450,629	-		CCNA_01337	0.32	-0.8
1,450,629	-		CCNA_01337	0.32	+0.4
1,450,629	-		CCNA_01337	0.32	-0.1
1,450,629	-		CCNA_01337	0.32	-1.7
1,450,671	+		CCNA_01337	0.35	-1.2
1,450,686	-		CCNA_01337	0.36	+0.7
1,450,734	+		CCNA_01337	0.39	+0.8
1,450,749	+		CCNA_01337	0.39	-0.8
1,450,757	-		CCNA_01337	0.40	+1.8
1,450,818	-		CCNA_01337	0.44	-0.7
1,450,829	+		CCNA_01337	0.44	-1.0
1,450,839	+				+0.8
1,450,902	+		CCNA_01337	0.49	+0.2
1,450,918	-		CCNA_01337	0.50	-0.9
1,450,943	-		CCNA_01337	0.51	-0.8
1,450,975	-		CCNA_01337	0.53	-0.4
1,450,986	-		CCNA_01337	0.54	-2.5
1,451,014	+		CCNA_01337	0.56	+0.9
1,451,032	+		CCNA_01337	0.57	-1.7
1,451,034	-		CCNA_01337	0.57	-0.8