Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00939

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Dimethyl Sulfoxide 5 vol%
1,013,557	+		CCNA_00938	0.40	+0.2
1,013,565	-		CCNA_00938	0.40	+0.3
1,013,565	-		CCNA_00938	0.40	-0.0
1,013,565	-		CCNA_00938	0.40	-1.1
1,013,565	-		CCNA_00938	0.40	+0.6
1,013,581	+		CCNA_00938	0.42	-1.8
1,013,584	-		CCNA_00938	0.42	+0.3
1,013,600	-		CCNA_00938	0.43	+0.7
1,013,605	-		CCNA_00938	0.44	+0.6
1,013,618	+		CCNA_00938	0.45	+0.2
1,013,672	+		CCNA_00938	0.49	-1.7
1,013,672	+		CCNA_00938	0.49	-1.8
1,013,680	-		CCNA_00938	0.50	+0.8
1,013,680	-		CCNA_00938	0.50	-0.6
1,013,686	+		CCNA_00938	0.51	-1.0
1,013,686	+		CCNA_00938	0.51	-0.9
1,013,694	-		CCNA_00938	0.51	-0.2
1,013,699	+		CCNA_00938	0.52	-0.6
1,013,699	+		CCNA_00938	0.52	+0.3
1,013,707	-		CCNA_00938	0.52	-1.0
1,013,713	-		CCNA_00938	0.53	+0.3
1,013,719	-		CCNA_00938	0.53	-2.5
1,013,719	-		CCNA_00938	0.53	+0.2
1,013,742	+		CCNA_00938	0.55	-0.2
1,013,764	-		CCNA_00938	0.57	+1.0
1,013,769	-				+0.9
1,013,773	+		CCNA_00938	0.58	-0.1
1,013,776	-		CCNA_00938	0.58	-0.1
1,013,781	-		CCNA_00938	0.59	-0.5
1,013,781	-		CCNA_00938	0.59	-0.4
1,013,789	+		CCNA_00938	0.59	+1.9
1,013,797	-		CCNA_00938	0.60	+1.1
1,013,797	-		CCNA_00938	0.60	+0.5
1,013,815	-		CCNA_00938	0.61	+1.1
1,013,817	+		CCNA_00938	0.62	+0.2
1,013,821	-		CCNA_00938	0.62	+0.4
1,013,825	-		CCNA_00938	0.62	+0.7
1,013,856	-		CCNA_00938	0.65	+0.1
1,013,893	+				+1.7
1,013,895	+		CCNA_00938	0.68	+1.6
1,013,907	-		CCNA_00938	0.69	+0.9
1,013,925	-		CCNA_00938	0.71	+1.3
1,013,973	-		CCNA_00938	0.75	+1.6
1,013,986	-		CCNA_00938	0.76	+0.8
1,013,986	-		CCNA_00938	0.76	+1.5
1,014,045	-		CCNA_00938	0.81	-0.0
1,014,052	-		CCNA_00938	0.81	+0.5
1,014,057	-		CCNA_00938	0.82	+0.6
1,014,078	+		CCNA_00938	0.84	+2.0
1,014,084	+		CCNA_00938	0.84	-2.2
1,014,086	-		CCNA_00938	0.84	+0.7
1,014,086	-		CCNA_00938	0.84	+0.9
1,014,103	+		CCNA_00938	0.86	-0.4
1,014,107	+		CCNA_00938	0.86	-0.9
1,014,111	-		CCNA_00938	0.86	+1.1
1,014,122	+		CCNA_00938	0.87	-0.5
1,014,158	+				-1.5
1,014,166	-				+0.3
1,014,166	-				+0.6
1,014,166	-				+0.3
1,014,180	+				+0.1
1,014,189	+				+1.0
1,014,207	-				+0.7
1,014,217	-				+0.7
1,014,266	-				+0.8
1,014,266	-				-0.8
1,014,305	+				-0.1
1,014,314	-				-0.3
1,014,327	+				+0.0
1,014,330	-				+2.6
1,014,330	-				+2.4
1,014,332	+				-1.3
1,014,332	+				+0.3
1,014,332	+				-0.3
1,014,332	+				-0.3
1,014,332	+				-0.1
1,014,332	+				-1.2
1,014,340	-				-0.5
1,014,340	-				-0.6
1,014,340	-				-0.9
1,014,340	-				+0.9
1,014,340	-				-1.6
1,014,344	+				+1.3
1,014,406	+				-0.6
1,014,410	-				+0.7
1,014,493	+				-0.5
1,014,494	+				+1.9
1,014,501	-				+0.3
1,014,502	-				+0.3
1,014,524	+				+1.8
1,014,585	-		CCNA_00939	0.15	-0.1
1,014,596	-		CCNA_00939	0.17	-2.0
1,014,624	+		CCNA_00939	0.23	+2.2
1,014,665	+		CCNA_00939	0.31	+2.5
1,014,723	+		CCNA_00939	0.42	+2.4
1,014,731	-		CCNA_00939	0.44	+0.4
1,014,793	+		CCNA_00939	0.56	+2.3
1,014,793	+		CCNA_00939	0.56	+2.4
1,014,832	+		CCNA_00939	0.64	+2.6
1,014,856	+		CCNA_00939	0.69	+2.6
1,014,877	+		CCNA_00939	0.73	+2.5
1,014,882	+		CCNA_00939	0.74	+2.7
1,014,887	+		CCNA_00939	0.75	+2.9
1,014,895	-		CCNA_00939	0.77	-1.3
1,014,902	+		CCNA_00939	0.78	+3.1
1,014,980	+				+1.8
1,014,980	+				+1.7
1,014,980	+				+1.5
1,015,048	+				+0.4
1,015,048	+				+1.5
1,015,056	-				-1.0
1,015,073	+				-0.1
1,015,081	-				+1.1
1,015,144	+				+1.1
1,015,176	+				+0.1
1,015,236	+				+1.5
1,015,239	-				-1.5
1,015,242	+				+0.4
1,015,244	+				-1.3
1,015,244	-				+0.1
1,015,244	-				-1.6
1,015,244	-				-0.8
1,015,252	-				+0.9
1,015,267	-				-0.3
1,015,300	-				-0.2
1,015,314	+		CCNA_00940	0.10	+0.9
1,015,320	+		CCNA_00940	0.11	-1.0
1,015,395	-		CCNA_00940	0.14	-1.5
1,015,395	-		CCNA_00940	0.14	-2.4
1,015,415	-		CCNA_00940	0.15	-0.7
1,015,416	-		CCNA_00940	0.15	-1.1
1,015,437	+		CCNA_00940	0.16	+0.5
1,015,467	+		CCNA_00940	0.18	-0.4
1,015,597	-		CCNA_00940	0.24	+0.3
1,015,629	+		CCNA_00940	0.26	-0.1
1,015,637	-		CCNA_00940	0.26	-0.9
1,015,707	+		CCNA_00940	0.30	+1.1
1,015,720	-		CCNA_00940	0.30	-0.4
1,015,738	+		CCNA_00940	0.31	+0.1
1,015,740	-		CCNA_00940	0.31	-0.2
1,015,740	-		CCNA_00940	0.31	-0.9
1,015,746	+		CCNA_00940	0.32	+1.4
1,015,792	+		CCNA_00940	0.34	-0.7
1,015,835	-		CCNA_00940	0.36	-2.2
1,015,854	+		CCNA_00940	0.37	+0.7
1,015,854	+		CCNA_00940	0.37	+0.6
1,015,862	-		CCNA_00940	0.37	+0.7
1,015,862	-		CCNA_00940	0.37	-0.1
1,015,876	+		CCNA_00940	0.38	-0.3
1,015,876	+		CCNA_00940	0.38	+0.6
1,015,898	+		CCNA_00940	0.39	-0.3
1,015,904	+		CCNA_00940	0.39	-1.0
1,015,933	+		CCNA_00940	0.41	+0.0
1,015,965	+		CCNA_00940	0.42	-0.6
1,015,965	+		CCNA_00940	0.42	+0.3
1,015,965	+		CCNA_00940	0.42	-1.1
1,015,970	+		CCNA_00940	0.43	+0.1