Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00887

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00886 and CCNA_00887 are separated by 182 nucleotidesCCNA_00887 and CCNA_00888 are separated by 124 nucleotidesCCNA_00888 and CCNA_00889 are separated by 3 nucleotides CCNA_00886: CCNA_00886 - aspartokinase, at 964,937 to 966,184 _00886 CCNA_00887: CCNA_00887 - hypothetical protein, at 966,367 to 966,831 _00887 CCNA_00888: CCNA_00888 - MCP-signal associated domain protein, at 966,956 to 967,309 _00888 CCNA_00889: CCNA_00889 - lumazine-binding domain protein, at 967,313 to 967,756 _00889 Position (kb) 966 967Strain fitness (log2 ratio) -2 -1 0 1 2at 966.178 kb on + strandat 966.178 kb on + strandat 966.178 kb on + strandat 966.178 kb on + strandat 966.178 kb on + strandat 966.186 kb on - strandat 966.186 kb on - strandat 966.186 kb on - strandat 966.194 kb on - strandat 966.228 kb on + strandat 966.236 kb on - strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.238 kb on + strandat 966.246 kb on - strandat 966.246 kb on - strandat 966.246 kb on - strandat 966.246 kb on - strandat 966.246 kb on - strandat 966.246 kb on - strandat 966.254 kb on + strandat 966.254 kb on + strandat 966.254 kb on + strandat 966.262 kb on - strandat 966.262 kb on - strandat 966.262 kb on - strandat 966.262 kb on - strandat 966.269 kb on + strandat 966.277 kb on - strandat 966.277 kb on - strandat 966.279 kb on - strandat 966.279 kb on - strandat 966.336 kb on - strandat 966.344 kb on - strandat 966.349 kb on - strandat 966.349 kb on - strandat 966.349 kb on - strandat 966.368 kb on + strandat 966.376 kb on + strandat 966.386 kb on - strandat 966.396 kb on + strandat 966.396 kb on + strandat 966.454 kb on - strand, within CCNA_00887at 966.466 kb on - strand, within CCNA_00887at 966.479 kb on + strand, within CCNA_00887at 966.512 kb on + strand, within CCNA_00887at 966.532 kb on + strand, within CCNA_00887at 966.539 kb on - strand, within CCNA_00887at 966.609 kb on + strand, within CCNA_00887at 966.635 kb on - strand, within CCNA_00887at 966.657 kb on + strand, within CCNA_00887at 966.690 kb on + strand, within CCNA_00887at 966.698 kb on - strand, within CCNA_00887at 966.698 kb on - strand, within CCNA_00887at 966.704 kb on - strand, within CCNA_00887at 966.726 kb on + strand, within CCNA_00887at 966.737 kb on + strand, within CCNA_00887at 966.763 kb on + strand, within CCNA_00887at 966.853 kb on + strandat 966.853 kb on + strandat 966.853 kb on + strandat 966.854 kb on + strandat 966.861 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.862 kb on - strandat 966.877 kb on + strandat 966.877 kb on + strandat 966.877 kb on + strandat 966.877 kb on + strandat 966.885 kb on - strandat 966.885 kb on - strandat 966.885 kb on - strandat 966.910 kb on + strandat 966.944 kb on - strandat 966.946 kb on + strandat 966.954 kb on - strandat 966.959 kb on + strandat 967.021 kb on - strand, within CCNA_00888at 967.022 kb on + strand, within CCNA_00888at 967.022 kb on + strand, within CCNA_00888at 967.024 kb on + strand, within CCNA_00888at 967.030 kb on - strand, within CCNA_00888at 967.032 kb on - strand, within CCNA_00888at 967.053 kb on + strand, within CCNA_00888at 967.066 kb on - strand, within CCNA_00888at 967.101 kb on + strand, within CCNA_00888at 967.138 kb on + strand, within CCNA_00888at 967.154 kb on - strand, within CCNA_00888at 967.259 kb on - strand, within CCNA_00888at 967.285 kb on + strandat 967.293 kb on - strandat 967.303 kb on + strandat 967.334 kb on - strandat 967.338 kb on + strandat 967.381 kb on + strand, within CCNA_00889at 967.488 kb on + strand, within CCNA_00889at 967.555 kb on - strand, within CCNA_00889at 967.555 kb on - strand, within CCNA_00889at 967.566 kb on - strand, within CCNA_00889at 967.569 kb on + strand, within CCNA_00889at 967.577 kb on - strand, within CCNA_00889at 967.587 kb on + strand, within CCNA_00889at 967.605 kb on - strand, within CCNA_00889at 967.635 kb on + strand, within CCNA_00889at 967.666 kb on - strand, within CCNA_00889at 967.680 kb on + strand, within CCNA_00889at 967.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol%
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966,178 + +1.7
966,178 + +0.8
966,178 + +1.5
966,178 + +1.5
966,178 + +1.6
966,186 - +1.5
966,186 - -2.2
966,186 - -0.2
966,194 - -0.9
966,228 + +1.3
966,236 - +1.0
966,238 + +1.1
966,238 + -0.0
966,238 + -0.1
966,238 + +1.7
966,238 + +1.0
966,238 + +1.0
966,238 + +0.4
966,238 + +1.1
966,238 + +0.5
966,238 + +0.6
966,238 + +0.6
966,238 + +1.2
966,246 - +0.3
966,246 - -0.7
966,246 - -1.9
966,246 - -0.2
966,246 - +0.4
966,246 - -0.0
966,254 + +0.9
966,254 + +0.9
966,254 + -0.2
966,262 - +1.7
966,262 - +0.4
966,262 - +1.5
966,262 - +0.2
966,269 + -0.4
966,277 - -1.0
966,277 - -2.4
966,279 - -0.7
966,279 - -0.6
966,336 - +1.0
966,344 - +0.9
966,349 - +0.1
966,349 - -0.8
966,349 - -0.9
966,368 + +0.5
966,376 + -1.8
966,386 - -0.4
966,396 + +0.8
966,396 + +0.8
966,454 - CCNA_00887 0.19 -0.1
966,466 - CCNA_00887 0.21 -1.6
966,479 + CCNA_00887 0.24 -1.7
966,512 + CCNA_00887 0.31 -0.5
966,532 + CCNA_00887 0.35 -0.3
966,539 - CCNA_00887 0.37 -0.2
966,609 + CCNA_00887 0.52 -0.6
966,635 - CCNA_00887 0.58 +0.4
966,657 + CCNA_00887 0.62 -1.0
966,690 + CCNA_00887 0.69 -0.9
966,698 - CCNA_00887 0.71 -0.7
966,698 - CCNA_00887 0.71 -0.7
966,704 - CCNA_00887 0.72 -1.4
966,726 + CCNA_00887 0.77 +0.6
966,737 + CCNA_00887 0.80 +0.8
966,763 + CCNA_00887 0.85 +0.1
966,853 + -0.1
966,853 + -1.1
966,853 + -1.0
966,854 + -2.2
966,861 - +1.5
966,862 - +0.2
966,862 - -0.6
966,862 - -1.3
966,862 - +1.7
966,862 - +0.4
966,862 - +0.7
966,862 - -1.7
966,862 - -1.5
966,877 + -1.8
966,877 + +0.6
966,877 + +0.6
966,877 + -1.9
966,885 - +1.9
966,885 - +0.6
966,885 - -0.5
966,910 + +0.3
966,944 - -1.3
966,946 + -1.5
966,954 - -0.4
966,959 + -1.2
967,021 - CCNA_00888 0.18 -0.4
967,022 + CCNA_00888 0.19 +0.3
967,022 + CCNA_00888 0.19 -0.3
967,024 + CCNA_00888 0.19 +0.3
967,030 - CCNA_00888 0.21 -0.8
967,032 - CCNA_00888 0.21 -1.2
967,053 + CCNA_00888 0.27 +0.1
967,066 - CCNA_00888 0.31 +0.6
967,101 + CCNA_00888 0.41 +0.3
967,138 + CCNA_00888 0.51 +1.7
967,154 - CCNA_00888 0.56 +0.0
967,259 - CCNA_00888 0.86 +0.9
967,285 + -0.1
967,293 - +0.6
967,303 + +0.6
967,334 - +1.9
967,338 + -0.7
967,381 + CCNA_00889 0.15 +0.1
967,488 + CCNA_00889 0.39 -0.0
967,555 - CCNA_00889 0.55 -0.4
967,555 - CCNA_00889 0.55 +0.9
967,566 - CCNA_00889 0.57 +0.7
967,569 + CCNA_00889 0.58 +0.0
967,577 - CCNA_00889 0.59 +1.0
967,587 + CCNA_00889 0.62 -0.5
967,605 - CCNA_00889 0.66 +0.2
967,635 + CCNA_00889 0.73 +2.6
967,666 - CCNA_00889 0.80 -0.3
967,680 + CCNA_00889 0.83 +0.1
967,729 + +0.5

Or see this region's nucleotide sequence