Experiment: PYE with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00772 and CCNA_00773 are separated by 218 nucleotides CCNA_00773 and CCNA_03937 are separated by 168 nucleotides CCNA_03937 and CCNA_00774 are separated by 26 nucleotides
CCNA_00772: CCNA_00772 - hypothetical protein, at 827,021 to 827,239
_00772
CCNA_00773: CCNA_00773 - carboxypeptidase S, at 827,458 to 828,936
_00773
CCNA_03937: CCNA_03937 - hypothetical protein, at 829,105 to 829,290
_03937
CCNA_00774: CCNA_00774 - ring hydroxylating diooxygenase, at 829,317 to 830,426
_00774
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 826.524 kb on + strand at 826.539 kb on - strand at 826.543 kb on + strand at 826.549 kb on - strand at 826.549 kb on - strand at 826.632 kb on + strand at 826.671 kb on - strand at 826.679 kb on + strand at 826.683 kb on - strand at 826.697 kb on - strand at 826.699 kb on + strand at 826.702 kb on - strand at 826.734 kb on - strand at 826.747 kb on - strand at 826.756 kb on - strand at 826.773 kb on + strand at 826.773 kb on + strand at 826.773 kb on + strand at 826.790 kb on + strand at 826.840 kb on + strand at 826.874 kb on - strand at 826.883 kb on - strand at 826.943 kb on + strand at 826.943 kb on + strand at 826.948 kb on + strand at 827.043 kb on + strand, within CCNA_00772 at 827.051 kb on - strand, within CCNA_00772 at 827.103 kb on + strand, within CCNA_00772 at 827.104 kb on + strand, within CCNA_00772 at 827.111 kb on - strand, within CCNA_00772 at 827.129 kb on + strand, within CCNA_00772 at 827.134 kb on + strand, within CCNA_00772 at 827.198 kb on - strand, within CCNA_00772 at 827.198 kb on - strand, within CCNA_00772 at 827.242 kb on - strand at 827.345 kb on - strand at 827.434 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.441 kb on + strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.449 kb on - strand at 827.469 kb on + strand at 827.469 kb on - strand at 827.500 kb on + strand at 827.513 kb on - strand at 827.513 kb on - strand at 827.561 kb on - strand at 827.728 kb on - strand, within CCNA_00773 at 827.742 kb on + strand, within CCNA_00773 at 827.743 kb on + strand, within CCNA_00773 at 827.750 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.751 kb on - strand, within CCNA_00773 at 827.762 kb on + strand, within CCNA_00773 at 827.775 kb on - strand, within CCNA_00773 at 827.775 kb on - strand, within CCNA_00773 at 827.776 kb on - strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.778 kb on + strand, within CCNA_00773 at 827.779 kb on + strand, within CCNA_00773 at 827.779 kb on + strand, within CCNA_00773 at 827.787 kb on - strand, within CCNA_00773 at 827.787 kb on - strand, within CCNA_00773 at 827.787 kb on - strand, within CCNA_00773 at 827.795 kb on + strand, within CCNA_00773 at 827.872 kb on - strand, within CCNA_00773 at 827.887 kb on + strand, within CCNA_00773 at 827.889 kb on - strand, within CCNA_00773 at 827.895 kb on - strand, within CCNA_00773 at 827.895 kb on - strand, within CCNA_00773 at 827.899 kb on - strand, within CCNA_00773 at 827.917 kb on + strand, within CCNA_00773 at 827.925 kb on - strand, within CCNA_00773 at 827.925 kb on - strand, within CCNA_00773 at 827.925 kb on - strand, within CCNA_00773 at 827.935 kb on + strand, within CCNA_00773 at 827.948 kb on - strand, within CCNA_00773 at 827.971 kb on - strand, within CCNA_00773 at 827.979 kb on - strand, within CCNA_00773 at 827.981 kb on - strand, within CCNA_00773 at 828.022 kb on - strand, within CCNA_00773 at 828.087 kb on - strand, within CCNA_00773 at 828.096 kb on + strand, within CCNA_00773 at 828.110 kb on - strand, within CCNA_00773 at 828.163 kb on - strand, within CCNA_00773 at 828.183 kb on + strand, within CCNA_00773 at 828.237 kb on + strand, within CCNA_00773 at 828.269 kb on + strand, within CCNA_00773 at 828.269 kb on + strand, within CCNA_00773 at 828.274 kb on + strand, within CCNA_00773 at 828.277 kb on - strand, within CCNA_00773 at 828.277 kb on - strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.279 kb on + strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.287 kb on - strand, within CCNA_00773 at 828.289 kb on + strand, within CCNA_00773 at 828.323 kb on + strand, within CCNA_00773 at 828.332 kb on - strand, within CCNA_00773 at 828.354 kb on + strand, within CCNA_00773 at 828.372 kb on - strand, within CCNA_00773 at 828.382 kb on + strand, within CCNA_00773 at 828.405 kb on - strand, within CCNA_00773 at 828.409 kb on - strand, within CCNA_00773 at 828.411 kb on + strand, within CCNA_00773 at 828.419 kb on - strand, within CCNA_00773 at 828.432 kb on + strand, within CCNA_00773 at 828.434 kb on - strand, within CCNA_00773 at 828.440 kb on - strand, within CCNA_00773 at 828.463 kb on + strand, within CCNA_00773 at 828.466 kb on - strand, within CCNA_00773 at 828.468 kb on + strand, within CCNA_00773 at 828.471 kb on - strand, within CCNA_00773 at 828.474 kb on - strand, within CCNA_00773 at 828.490 kb on + strand, within CCNA_00773 at 828.500 kb on - strand, within CCNA_00773 at 828.516 kb on + strand, within CCNA_00773 at 828.580 kb on - strand, within CCNA_00773 at 828.588 kb on + strand, within CCNA_00773 at 828.590 kb on - strand, within CCNA_00773 at 828.594 kb on + strand, within CCNA_00773 at 828.602 kb on - strand, within CCNA_00773 at 828.602 kb on - strand, within CCNA_00773 at 828.602 kb on - strand, within CCNA_00773 at 828.668 kb on + strand, within CCNA_00773 at 828.689 kb on + strand, within CCNA_00773 at 828.694 kb on + strand, within CCNA_00773 at 828.702 kb on - strand, within CCNA_00773 at 828.737 kb on + strand, within CCNA_00773 at 828.744 kb on + strand, within CCNA_00773 at 828.785 kb on - strand, within CCNA_00773 at 828.833 kb on + strand at 828.833 kb on + strand at 828.851 kb on + strand at 828.851 kb on + strand at 828.864 kb on + strand at 828.896 kb on + strand at 828.904 kb on - strand at 828.904 kb on - strand at 828.920 kb on - strand at 828.931 kb on + strand at 828.939 kb on - strand at 829.001 kb on + strand at 829.001 kb on + strand at 829.001 kb on + strand at 829.009 kb on + strand at 829.009 kb on - strand at 829.009 kb on - strand at 829.009 kb on - strand at 829.017 kb on - strand at 829.022 kb on - strand at 829.061 kb on - strand at 829.126 kb on - strand, within CCNA_03937 at 829.161 kb on + strand, within CCNA_03937 at 829.162 kb on + strand, within CCNA_03937 at 829.162 kb on + strand, within CCNA_03937 at 829.170 kb on - strand, within CCNA_03937 at 829.209 kb on + strand, within CCNA_03937 at 829.217 kb on - strand, within CCNA_03937 at 829.217 kb on - strand, within CCNA_03937 at 829.217 kb on - strand, within CCNA_03937 at 829.219 kb on - strand, within CCNA_03937 at 829.229 kb on + strand, within CCNA_03937 at 829.257 kb on + strand, within CCNA_03937 at 829.344 kb on - strand at 829.344 kb on - strand at 829.354 kb on - strand at 829.463 kb on - strand, within CCNA_00774 at 829.473 kb on + strand, within CCNA_00774 at 829.473 kb on + strand, within CCNA_00774 at 829.481 kb on - strand, within CCNA_00774 at 829.481 kb on - strand, within CCNA_00774 at 829.481 kb on - strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.494 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.499 kb on + strand, within CCNA_00774 at 829.502 kb on - strand, within CCNA_00774 at 829.507 kb on - strand, within CCNA_00774 at 829.507 kb on - strand, within CCNA_00774 at 829.525 kb on - strand, within CCNA_00774 at 829.547 kb on - strand, within CCNA_00774 at 829.569 kb on + strand, within CCNA_00774 at 829.593 kb on - strand, within CCNA_00774 at 829.623 kb on + strand, within CCNA_00774 at 829.631 kb on - strand, within CCNA_00774 at 829.675 kb on + strand, within CCNA_00774 at 829.683 kb on + strand, within CCNA_00774 at 829.683 kb on - strand, within CCNA_00774 at 829.707 kb on + strand, within CCNA_00774 at 829.707 kb on + strand, within CCNA_00774 at 829.725 kb on + strand, within CCNA_00774 at 829.725 kb on + strand, within CCNA_00774 at 829.741 kb on + strand, within CCNA_00774 at 829.795 kb on - strand, within CCNA_00774 at 829.811 kb on + strand, within CCNA_00774 at 829.811 kb on + strand, within CCNA_00774 at 829.819 kb on - strand, within CCNA_00774 at 829.819 kb on - strand, within CCNA_00774 at 829.835 kb on - strand, within CCNA_00774 at 829.840 kb on - strand, within CCNA_00774 at 829.860 kb on + strand, within CCNA_00774 at 829.860 kb on + strand, within CCNA_00774 at 829.869 kb on - strand, within CCNA_00774 at 829.888 kb on + strand, within CCNA_00774 at 829.888 kb on + strand, within CCNA_00774 at 829.896 kb on - strand, within CCNA_00774 at 829.899 kb on + strand, within CCNA_00774 at 829.907 kb on - strand, within CCNA_00774
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol% remove 826,524 + -2.0 826,539 - -1.0 826,543 + -0.7 826,549 - -0.5 826,549 - +0.5 826,632 + +0.4 826,671 - -0.8 826,679 + +0.8 826,683 - -0.8 826,697 - -0.4 826,699 + +0.8 826,702 - -0.1 826,734 - -0.4 826,747 - -0.3 826,756 - +0.6 826,773 + +0.9 826,773 + -0.7 826,773 + -2.0 826,790 + -0.9 826,840 + +1.7 826,874 - +0.4 826,883 - +0.2 826,943 + +0.4 826,943 + +0.1 826,948 + +0.2 827,043 + CCNA_00772 0.10 +0.1 827,051 - CCNA_00772 0.14 -0.8 827,103 + CCNA_00772 0.37 +0.6 827,104 + CCNA_00772 0.38 -0.8 827,111 - CCNA_00772 0.41 -1.3 827,129 + CCNA_00772 0.49 +1.9 827,134 + CCNA_00772 0.52 +1.7 827,198 - CCNA_00772 0.81 +0.6 827,198 - CCNA_00772 0.81 -0.4 827,242 - -0.4 827,345 - -0.3 827,434 + -1.6 827,441 + -2.0 827,441 + +1.5 827,441 + -2.0 827,441 + -0.3 827,441 + -1.1 827,442 - -1.2 827,442 - -0.6 827,442 - -0.2 827,442 - +1.0 827,449 - -0.7 827,449 - -0.5 827,449 - -0.7 827,449 - +0.3 827,449 - +0.4 827,449 - +0.9 827,449 - -0.5 827,469 + -0.1 827,469 - -1.9 827,500 + +1.7 827,513 - -0.5 827,513 - +0.6 827,561 - -0.2 827,728 - CCNA_00773 0.18 -1.4 827,742 + CCNA_00773 0.19 +0.0 827,743 + CCNA_00773 0.19 -0.1 827,750 - CCNA_00773 0.20 -0.9 827,751 - CCNA_00773 0.20 -0.5 827,751 - CCNA_00773 0.20 -0.6 827,751 - CCNA_00773 0.20 +0.4 827,751 - CCNA_00773 0.20 -1.4 827,762 + CCNA_00773 0.21 +1.2 827,775 - CCNA_00773 0.21 +0.2 827,775 - CCNA_00773 0.21 +0.3 827,776 - CCNA_00773 0.22 +1.4 827,778 + CCNA_00773 0.22 -1.3 827,778 + CCNA_00773 0.22 +1.8 827,778 + CCNA_00773 0.22 +0.3 827,778 + CCNA_00773 0.22 +0.5 827,779 + CCNA_00773 0.22 -0.2 827,779 + CCNA_00773 0.22 +2.0 827,787 - CCNA_00773 0.22 +0.2 827,787 - CCNA_00773 0.22 +0.1 827,787 - CCNA_00773 0.22 -0.8 827,795 + CCNA_00773 0.23 +2.5 827,872 - CCNA_00773 0.28 +1.3 827,887 + CCNA_00773 0.29 -1.4 827,889 - CCNA_00773 0.29 +0.7 827,895 - CCNA_00773 0.30 +0.9 827,895 - CCNA_00773 0.30 -1.1 827,899 - CCNA_00773 0.30 +0.7 827,917 + CCNA_00773 0.31 +0.1 827,925 - CCNA_00773 0.32 +0.9 827,925 - CCNA_00773 0.32 -0.5 827,925 - CCNA_00773 0.32 +0.4 827,935 + CCNA_00773 0.32 -0.3 827,948 - CCNA_00773 0.33 -0.6 827,971 - CCNA_00773 0.35 -0.3 827,979 - CCNA_00773 0.35 +0.8 827,981 - CCNA_00773 0.35 +0.3 828,022 - CCNA_00773 0.38 +0.9 828,087 - CCNA_00773 0.43 -0.0 828,096 + CCNA_00773 0.43 -0.2 828,110 - CCNA_00773 0.44 +1.8 828,163 - CCNA_00773 0.48 +0.4 828,183 + CCNA_00773 0.49 +1.1 828,237 + CCNA_00773 0.53 +0.0 828,269 + CCNA_00773 0.55 +0.8 828,269 + CCNA_00773 0.55 -0.5 828,274 + CCNA_00773 0.55 +0.4 828,277 - CCNA_00773 0.55 +0.7 828,277 - CCNA_00773 0.55 +0.7 828,279 + CCNA_00773 0.56 +0.2 828,279 + CCNA_00773 0.56 -0.8 828,279 + CCNA_00773 0.56 +1.1 828,279 + CCNA_00773 0.56 -0.5 828,279 + CCNA_00773 0.56 -0.2 828,279 + CCNA_00773 0.56 -0.3 828,279 + CCNA_00773 0.56 +0.0 828,279 + CCNA_00773 0.56 -2.1 828,279 + CCNA_00773 0.56 -0.5 828,279 + CCNA_00773 0.56 +0.8 828,279 + CCNA_00773 0.56 +1.9 828,279 + CCNA_00773 0.56 -1.2 828,279 + CCNA_00773 0.56 -0.7 828,279 + CCNA_00773 0.56 +0.3 828,287 - CCNA_00773 0.56 +2.6 828,287 - CCNA_00773 0.56 -0.2 828,287 - CCNA_00773 0.56 +0.1 828,287 - CCNA_00773 0.56 +1.1 828,287 - CCNA_00773 0.56 +0.9 828,287 - CCNA_00773 0.56 +0.6 828,287 - +1.5 828,287 - CCNA_00773 0.56 +1.3 828,287 - CCNA_00773 0.56 +0.2 828,287 - CCNA_00773 0.56 +1.2 828,287 - CCNA_00773 0.56 +0.9 828,289 + CCNA_00773 0.56 -0.7 828,323 + CCNA_00773 0.58 +0.8 828,332 - CCNA_00773 0.59 +0.5 828,354 + CCNA_00773 0.61 -0.7 828,372 - CCNA_00773 0.62 -0.6 828,382 + CCNA_00773 0.62 +0.2 828,405 - CCNA_00773 0.64 -2.2 828,409 - CCNA_00773 0.64 -0.6 828,411 + CCNA_00773 0.64 -0.2 828,419 - CCNA_00773 0.65 -0.6 828,432 + CCNA_00773 0.66 +0.8 828,434 - CCNA_00773 0.66 -1.2 828,440 - CCNA_00773 0.66 -0.0 828,463 + CCNA_00773 0.68 -0.6 828,466 - CCNA_00773 0.68 -1.7 828,468 + CCNA_00773 0.68 +0.1 828,471 - CCNA_00773 0.68 +0.2 828,474 - CCNA_00773 0.69 +0.8 828,490 + CCNA_00773 0.70 -0.9 828,500 - CCNA_00773 0.70 -1.2 828,516 + CCNA_00773 0.72 +1.7 828,580 - CCNA_00773 0.76 -1.4 828,588 + CCNA_00773 0.76 +0.3 828,590 - CCNA_00773 0.77 -0.2 828,594 + CCNA_00773 0.77 +0.6 828,602 - CCNA_00773 0.77 -1.1 828,602 - CCNA_00773 0.77 +1.1 828,602 - CCNA_00773 0.77 -1.1 828,668 + CCNA_00773 0.82 +0.2 828,689 + CCNA_00773 0.83 +1.3 828,694 + CCNA_00773 0.84 +0.4 828,702 - CCNA_00773 0.84 -1.1 828,737 + CCNA_00773 0.86 -1.4 828,744 + CCNA_00773 0.87 +1.0 828,785 - CCNA_00773 0.90 -1.3 828,833 + +1.5 828,833 + +1.8 828,851 + +0.7 828,851 + -0.6 828,864 + +1.5 828,896 + +4.5 828,904 - +0.4 828,904 - -0.4 828,920 - -1.1 828,931 + -0.1 828,939 - +0.2 829,001 + +3.9 829,001 + -0.5 829,001 + +1.5 829,009 + +0.6 829,009 - +0.4 829,009 - +0.6 829,009 - -0.7 829,017 - +0.9 829,022 - +0.3 829,061 - -0.7 829,126 - CCNA_03937 0.11 -0.6 829,161 + CCNA_03937 0.30 -0.1 829,162 + CCNA_03937 0.31 +0.3 829,162 + CCNA_03937 0.31 +0.5 829,170 - CCNA_03937 0.35 +0.4 829,209 + CCNA_03937 0.56 -1.7 829,217 - CCNA_03937 0.60 -0.7 829,217 - CCNA_03937 0.60 +0.5 829,217 - CCNA_03937 0.60 -0.2 829,219 - CCNA_03937 0.61 -0.1 829,229 + CCNA_03937 0.67 -0.3 829,257 + CCNA_03937 0.82 -1.4 829,344 - -0.8 829,344 - -0.1 829,354 - +0.4 829,463 - CCNA_00774 0.13 +0.3 829,473 + CCNA_00774 0.14 +1.5 829,473 + CCNA_00774 0.14 +1.6 829,481 - CCNA_00774 0.15 +1.2 829,481 - CCNA_00774 0.15 -0.4 829,481 - CCNA_00774 0.15 -0.7 829,494 + CCNA_00774 0.16 +0.6 829,494 + CCNA_00774 0.16 +0.4 829,494 + CCNA_00774 0.16 +0.8 829,494 + CCNA_00774 0.16 +1.5 829,494 + CCNA_00774 0.16 -0.4 829,499 + CCNA_00774 0.16 +0.3 829,499 + CCNA_00774 0.16 -1.7 829,499 + CCNA_00774 0.16 -0.6 829,499 + CCNA_00774 0.16 +1.7 829,499 + CCNA_00774 0.16 -0.8 829,499 + CCNA_00774 0.16 +0.1 829,499 + CCNA_00774 0.16 +0.0 829,499 + CCNA_00774 0.16 -0.1 829,502 - CCNA_00774 0.17 +0.2 829,507 - CCNA_00774 0.17 +0.8 829,507 - CCNA_00774 0.17 -0.4 829,525 - CCNA_00774 0.19 -2.1 829,547 - CCNA_00774 0.21 +1.8 829,569 + CCNA_00774 0.23 -2.3 829,593 - CCNA_00774 0.25 -1.0 829,623 + CCNA_00774 0.28 -0.3 829,631 - CCNA_00774 0.28 +0.3 829,675 + CCNA_00774 0.32 -0.3 829,683 + CCNA_00774 0.33 -1.4 829,683 - CCNA_00774 0.33 -1.8 829,707 + CCNA_00774 0.35 -0.4 829,707 + CCNA_00774 0.35 -0.3 829,725 + CCNA_00774 0.37 +0.9 829,725 + CCNA_00774 0.37 +0.2 829,741 + CCNA_00774 0.38 -0.4 829,795 - CCNA_00774 0.43 -0.2 829,811 + CCNA_00774 0.45 +1.5 829,811 + CCNA_00774 0.45 +0.7 829,819 - CCNA_00774 0.45 +1.0 829,819 - CCNA_00774 0.45 +0.1 829,835 - CCNA_00774 0.47 -1.3 829,840 - CCNA_00774 0.47 +0.5 829,860 + CCNA_00774 0.49 -1.9 829,860 + CCNA_00774 0.49 -0.0 829,869 - CCNA_00774 0.50 +0.4 829,888 + CCNA_00774 0.51 -0.1 829,888 + CCNA_00774 0.51 -0.7 829,896 - CCNA_00774 0.52 -0.2 829,899 + CCNA_00774 0.52 -1.4 829,907 - CCNA_00774 0.53 -0.8
Or see this region's nucleotide sequence