Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00646

Experiment: PYE with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00645 and CCNA_00646 are separated by 11 nucleotidesCCNA_00646 and CCNA_00647 are separated by 12 nucleotidesCCNA_00647 and CCNA_00648 are separated by 4 nucleotides CCNA_00645: CCNA_00645 - nitrate binding protein nrtA, at 695,435 to 696,727 _00645 CCNA_00646: CCNA_00646 - nitrate transport permease protein nrtB, at 696,739 to 697,629 _00646 CCNA_00647: CCNA_00647 - nitrate transport ATP-binding protein nrtD, at 697,642 to 698,427 _00647 CCNA_00648: CCNA_00648 - nitrate response regulator NasT, at 698,432 to 699,154 _00648 Position (kb) 696 697 698Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 695.765 kb on - strand, within CCNA_00645at 695.776 kb on + strand, within CCNA_00645at 695.785 kb on - strand, within CCNA_00645at 695.821 kb on + strand, within CCNA_00645at 695.826 kb on - strand, within CCNA_00645at 695.844 kb on - strand, within CCNA_00645at 695.857 kb on - strand, within CCNA_00645at 695.873 kb on + strand, within CCNA_00645at 695.890 kb on + strand, within CCNA_00645at 695.892 kb on - strand, within CCNA_00645at 695.899 kb on + strand, within CCNA_00645at 695.917 kb on + strand, within CCNA_00645at 695.917 kb on + strand, within CCNA_00645at 695.940 kb on - strand, within CCNA_00645at 695.985 kb on + strand, within CCNA_00645at 696.044 kb on + strand, within CCNA_00645at 696.044 kb on + strand, within CCNA_00645at 696.044 kb on + strand, within CCNA_00645at 696.052 kb on - strand, within CCNA_00645at 696.093 kb on - strand, within CCNA_00645at 696.093 kb on - strand, within CCNA_00645at 696.099 kb on - strand, within CCNA_00645at 696.116 kb on - strand, within CCNA_00645at 696.165 kb on - strand, within CCNA_00645at 696.177 kb on + strand, within CCNA_00645at 696.185 kb on - strand, within CCNA_00645at 696.192 kb on - strand, within CCNA_00645at 696.196 kb on - strand, within CCNA_00645at 696.208 kb on + strand, within CCNA_00645at 696.217 kb on - strand, within CCNA_00645at 696.235 kb on - strand, within CCNA_00645at 696.245 kb on - strand, within CCNA_00645at 696.262 kb on - strand, within CCNA_00645at 696.269 kb on + strand, within CCNA_00645at 696.280 kb on - strand, within CCNA_00645at 696.284 kb on + strand, within CCNA_00645at 696.292 kb on - strand, within CCNA_00645at 696.292 kb on - strand, within CCNA_00645at 696.294 kb on + strand, within CCNA_00645at 696.297 kb on - strand, within CCNA_00645at 696.325 kb on - strand, within CCNA_00645at 696.325 kb on - strand, within CCNA_00645at 696.333 kb on - strand, within CCNA_00645at 696.400 kb on + strand, within CCNA_00645at 696.407 kb on + strand, within CCNA_00645at 696.422 kb on + strand, within CCNA_00645at 696.424 kb on + strand, within CCNA_00645at 696.430 kb on - strand, within CCNA_00645at 696.453 kb on + strand, within CCNA_00645at 696.483 kb on + strand, within CCNA_00645at 696.491 kb on - strand, within CCNA_00645at 696.517 kb on - strand, within CCNA_00645at 696.522 kb on - strand, within CCNA_00645at 696.544 kb on + strand, within CCNA_00645at 696.546 kb on + strand, within CCNA_00645at 696.546 kb on - strand, within CCNA_00645at 696.616 kb on - strandat 696.616 kb on - strandat 696.665 kb on + strandat 696.673 kb on - strandat 696.721 kb on + strandat 696.721 kb on + strandat 696.721 kb on + strandat 696.721 kb on + strandat 696.729 kb on - strandat 696.729 kb on - strandat 696.729 kb on - strandat 696.729 kb on - strandat 696.747 kb on + strandat 696.747 kb on + strandat 696.754 kb on + strandat 696.754 kb on + strandat 696.755 kb on - strandat 696.755 kb on - strandat 696.761 kb on - strandat 696.762 kb on - strandat 696.762 kb on - strandat 696.767 kb on - strandat 696.767 kb on - strandat 696.802 kb on + strandat 696.814 kb on + strandat 696.829 kb on - strand, within CCNA_00646at 696.843 kb on - strand, within CCNA_00646at 696.874 kb on + strand, within CCNA_00646at 696.879 kb on - strand, within CCNA_00646at 696.908 kb on + strand, within CCNA_00646at 696.908 kb on + strand, within CCNA_00646at 696.916 kb on - strand, within CCNA_00646at 696.933 kb on + strand, within CCNA_00646at 696.933 kb on + strand, within CCNA_00646at 696.933 kb on + strand, within CCNA_00646at 696.933 kb on + strand, within CCNA_00646at 696.933 kb on + strand, within CCNA_00646at 696.933 kb on + strand, within CCNA_00646at 696.938 kb on + strand, within CCNA_00646at 696.941 kb on - strand, within CCNA_00646at 696.941 kb on - strand, within CCNA_00646at 696.941 kb on - strand, within CCNA_00646at 696.941 kb on - strand, within CCNA_00646at 696.941 kb on - strand, within CCNA_00646at 696.946 kb on - strand, within CCNA_00646at 696.948 kb on + strand, within CCNA_00646at 696.975 kb on + strand, within CCNA_00646at 696.982 kb on - strand, within CCNA_00646at 697.032 kb on + strand, within CCNA_00646at 697.032 kb on + strand, within CCNA_00646at 697.032 kb on + strand, within CCNA_00646at 697.032 kb on + strand, within CCNA_00646at 697.035 kb on - strand, within CCNA_00646at 697.040 kb on - strand, within CCNA_00646at 697.040 kb on - strand, within CCNA_00646at 697.108 kb on + strand, within CCNA_00646at 697.121 kb on + strand, within CCNA_00646at 697.153 kb on - strand, within CCNA_00646at 697.213 kb on + strand, within CCNA_00646at 697.222 kb on - strand, within CCNA_00646at 697.225 kb on + strand, within CCNA_00646at 697.225 kb on + strand, within CCNA_00646at 697.232 kb on - strand, within CCNA_00646at 697.238 kb on - strand, within CCNA_00646at 697.295 kb on + strand, within CCNA_00646at 697.295 kb on + strand, within CCNA_00646at 697.297 kb on + strand, within CCNA_00646at 697.326 kb on - strand, within CCNA_00646at 697.354 kb on + strand, within CCNA_00646at 697.373 kb on - strand, within CCNA_00646at 697.393 kb on + strand, within CCNA_00646at 697.401 kb on - strand, within CCNA_00646at 697.401 kb on - strand, within CCNA_00646at 697.411 kb on - strand, within CCNA_00646at 697.434 kb on - strand, within CCNA_00646at 697.434 kb on - strand, within CCNA_00646at 697.434 kb on - strand, within CCNA_00646at 697.498 kb on + strand, within CCNA_00646at 697.501 kb on + strand, within CCNA_00646at 697.501 kb on - strand, within CCNA_00646at 697.503 kb on + strand, within CCNA_00646at 697.503 kb on + strand, within CCNA_00646at 697.503 kb on + strand, within CCNA_00646at 697.506 kb on - strand, within CCNA_00646at 697.511 kb on - strand, within CCNA_00646at 697.511 kb on - strand, within CCNA_00646at 697.542 kb on + strandat 697.542 kb on + strandat 697.542 kb on + strandat 697.542 kb on + strandat 697.542 kb on + strandat 697.542 kb on + strandat 697.542 kb on + strandat 697.550 kb on - strandat 697.557 kb on + strandat 697.566 kb on + strandat 697.590 kb on + strandat 697.631 kb on + strandat 697.633 kb on - strandat 697.634 kb on - strandat 697.644 kb on + strandat 697.645 kb on + strandat 697.652 kb on - strandat 697.658 kb on - strandat 697.711 kb on + strandat 697.711 kb on - strandat 697.716 kb on + strandat 697.719 kb on - strandat 697.719 kb on - strandat 697.719 kb on - strandat 697.726 kb on + strand, within CCNA_00647at 697.751 kb on - strand, within CCNA_00647at 697.792 kb on - strand, within CCNA_00647at 697.794 kb on + strand, within CCNA_00647at 697.802 kb on - strand, within CCNA_00647at 697.857 kb on + strand, within CCNA_00647at 697.906 kb on + strand, within CCNA_00647at 697.914 kb on - strand, within CCNA_00647at 697.925 kb on - strand, within CCNA_00647at 697.957 kb on + strand, within CCNA_00647at 697.957 kb on + strand, within CCNA_00647at 697.957 kb on + strand, within CCNA_00647at 698.004 kb on + strand, within CCNA_00647at 698.004 kb on + strand, within CCNA_00647at 698.004 kb on + strand, within CCNA_00647at 698.069 kb on + strand, within CCNA_00647at 698.077 kb on - strand, within CCNA_00647at 698.077 kb on - strand, within CCNA_00647at 698.111 kb on - strand, within CCNA_00647at 698.155 kb on + strand, within CCNA_00647at 698.163 kb on - strand, within CCNA_00647at 698.168 kb on - strand, within CCNA_00647at 698.168 kb on - strand, within CCNA_00647at 698.172 kb on + strand, within CCNA_00647at 698.173 kb on + strand, within CCNA_00647at 698.173 kb on + strand, within CCNA_00647at 698.173 kb on + strand, within CCNA_00647at 698.183 kb on + strand, within CCNA_00647at 698.186 kb on - strand, within CCNA_00647at 698.186 kb on - strand, within CCNA_00647at 698.191 kb on - strand, within CCNA_00647at 698.191 kb on - strand, within CCNA_00647at 698.193 kb on + strand, within CCNA_00647at 698.218 kb on + strand, within CCNA_00647at 698.226 kb on - strand, within CCNA_00647at 698.280 kb on + strand, within CCNA_00647at 698.299 kb on + strand, within CCNA_00647at 698.300 kb on + strand, within CCNA_00647at 698.305 kb on - strand, within CCNA_00647at 698.311 kb on + strand, within CCNA_00647at 698.319 kb on - strand, within CCNA_00647at 698.319 kb on - strand, within CCNA_00647at 698.362 kb on + strandat 698.362 kb on + strandat 698.374 kb on + strandat 698.380 kb on - strandat 698.565 kb on + strand, within CCNA_00648at 698.565 kb on + strand, within CCNA_00648at 698.565 kb on + strand, within CCNA_00648at 698.565 kb on + strand, within CCNA_00648at 698.566 kb on + strand, within CCNA_00648at 698.573 kb on - strand, within CCNA_00648

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol%
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695,765 - CCNA_00645 0.26 -0.9
695,776 + CCNA_00645 0.26 -0.9
695,785 - CCNA_00645 0.27 +1.0
695,821 + CCNA_00645 0.30 +0.9
695,826 - CCNA_00645 0.30 -1.4
695,844 - CCNA_00645 0.32 -1.8
695,857 - CCNA_00645 0.33 -0.1
695,873 + CCNA_00645 0.34 +0.1
695,890 + CCNA_00645 0.35 -1.2
695,892 - CCNA_00645 0.35 +0.9
695,899 + CCNA_00645 0.36 -0.7
695,917 + CCNA_00645 0.37 -1.8
695,917 + CCNA_00645 0.37 -0.3
695,940 - CCNA_00645 0.39 -0.8
695,985 + CCNA_00645 0.43 +1.5
696,044 + CCNA_00645 0.47 +0.7
696,044 + CCNA_00645 0.47 -2.1
696,044 + CCNA_00645 0.47 -0.2
696,052 - CCNA_00645 0.48 +1.1
696,093 - CCNA_00645 0.51 +0.4
696,093 - CCNA_00645 0.51 +0.1
696,099 - CCNA_00645 0.51 -0.1
696,116 - CCNA_00645 0.53 -0.5
696,165 - CCNA_00645 0.56 -1.5
696,177 + CCNA_00645 0.57 -0.7
696,185 - CCNA_00645 0.58 -0.3
696,192 - CCNA_00645 0.59 +0.5
696,196 - CCNA_00645 0.59 -0.3
696,208 + CCNA_00645 0.60 -2.1
696,217 - CCNA_00645 0.60 -1.3
696,235 - CCNA_00645 0.62 +1.0
696,245 - CCNA_00645 0.63 -0.6
696,262 - CCNA_00645 0.64 -1.0
696,269 + CCNA_00645 0.65 -0.9
696,280 - CCNA_00645 0.65 -0.9
696,284 + CCNA_00645 0.66 -1.9
696,292 - CCNA_00645 0.66 -3.0
696,292 - CCNA_00645 0.66 -1.9
696,294 + CCNA_00645 0.66 -2.0
696,297 - CCNA_00645 0.67 -0.1
696,325 - CCNA_00645 0.69 +0.5
696,325 - CCNA_00645 0.69 -0.9
696,333 - CCNA_00645 0.69 +0.7
696,400 + CCNA_00645 0.75 +0.0
696,407 + CCNA_00645 0.75 -0.4
696,422 + CCNA_00645 0.76 +1.5
696,424 + CCNA_00645 0.76 -1.1
696,430 - CCNA_00645 0.77 -1.1
696,453 + CCNA_00645 0.79 -0.2
696,483 + CCNA_00645 0.81 -1.9
696,491 - CCNA_00645 0.82 +0.9
696,517 - CCNA_00645 0.84 -0.9
696,522 - CCNA_00645 0.84 +0.9
696,544 + CCNA_00645 0.86 -0.8
696,546 + CCNA_00645 0.86 -0.3
696,546 - CCNA_00645 0.86 +0.0
696,616 - +1.1
696,616 - -1.7
696,665 + -0.2
696,673 - +0.4
696,721 + -2.2
696,721 + -1.4
696,721 + +0.6
696,721 + -0.2
696,729 - +0.5
696,729 - -0.5
696,729 - -1.7
696,729 - +0.5
696,747 + -0.0
696,747 + +0.3
696,754 + -0.6
696,754 + -1.6
696,755 - +0.9
696,755 - +0.6
696,761 - -2.0
696,762 - -1.4
696,762 - -0.6
696,767 - -1.7
696,767 - -0.9
696,802 + +0.4
696,814 + -1.3
696,829 - CCNA_00646 0.10 +0.1
696,843 - CCNA_00646 0.12 +0.3
696,874 + CCNA_00646 0.15 -0.4
696,879 - CCNA_00646 0.16 -1.9
696,908 + CCNA_00646 0.19 -1.2
696,908 + CCNA_00646 0.19 +0.1
696,916 - CCNA_00646 0.20 +0.5
696,933 + CCNA_00646 0.22 +1.7
696,933 + CCNA_00646 0.22 +0.0
696,933 + CCNA_00646 0.22 +0.4
696,933 + CCNA_00646 0.22 -1.9
696,933 + CCNA_00646 0.22 -2.2
696,933 + CCNA_00646 0.22 -2.3
696,938 + CCNA_00646 0.22 +0.8
696,941 - CCNA_00646 0.23 -1.0
696,941 - CCNA_00646 0.23 -0.4
696,941 - CCNA_00646 0.23 -0.8
696,941 - CCNA_00646 0.23 -0.3
696,941 - CCNA_00646 0.23 -1.5
696,946 - CCNA_00646 0.23 +0.0
696,948 + CCNA_00646 0.23 -0.2
696,975 + CCNA_00646 0.26 -0.5
696,982 - CCNA_00646 0.27 +0.6
697,032 + CCNA_00646 0.33 -0.3
697,032 + CCNA_00646 0.33 +0.8
697,032 + CCNA_00646 0.33 -1.1
697,032 + CCNA_00646 0.33 -1.3
697,035 - CCNA_00646 0.33 -2.0
697,040 - CCNA_00646 0.34 +0.1
697,040 - CCNA_00646 0.34 -0.8
697,108 + CCNA_00646 0.41 -1.9
697,121 + CCNA_00646 0.43 -0.4
697,153 - CCNA_00646 0.46 +0.7
697,213 + CCNA_00646 0.53 -2.2
697,222 - CCNA_00646 0.54 -0.5
697,225 + CCNA_00646 0.55 -1.6
697,225 + CCNA_00646 0.55 +0.1
697,232 - CCNA_00646 0.55 +1.1
697,238 - CCNA_00646 0.56 -0.9
697,295 + CCNA_00646 0.62 -0.4
697,295 + CCNA_00646 0.62 +0.0
697,297 + CCNA_00646 0.63 -1.7
697,326 - CCNA_00646 0.66 +1.2
697,354 + CCNA_00646 0.69 -1.5
697,373 - CCNA_00646 0.71 -0.8
697,393 + CCNA_00646 0.73 -0.9
697,401 - CCNA_00646 0.74 +0.0
697,401 - CCNA_00646 0.74 -1.5
697,411 - CCNA_00646 0.75 -0.2
697,434 - CCNA_00646 0.78 -2.5
697,434 - CCNA_00646 0.78 -0.2
697,434 - CCNA_00646 0.78 -0.5
697,498 + CCNA_00646 0.85 -0.5
697,501 + CCNA_00646 0.86 -0.5
697,501 - CCNA_00646 0.86 -2.6
697,503 + CCNA_00646 0.86 -0.9
697,503 + CCNA_00646 0.86 -0.7
697,503 + CCNA_00646 0.86 -1.7
697,506 - CCNA_00646 0.86 -0.3
697,511 - CCNA_00646 0.87 -0.4
697,511 - CCNA_00646 0.87 +0.5
697,542 + -0.1
697,542 + -0.2
697,542 + +0.1
697,542 + -2.3
697,542 + +0.3
697,542 + +0.0
697,542 + -1.1
697,550 - -0.1
697,557 + -0.7
697,566 + -0.8
697,590 + -1.1
697,631 + -0.4
697,633 - -0.3
697,634 - -0.8
697,644 + +0.1
697,645 + -1.0
697,652 - -1.3
697,658 - +0.1
697,711 + -0.0
697,711 - -0.6
697,716 + -1.0
697,719 - -1.9
697,719 - +1.5
697,719 - +0.1
697,726 + CCNA_00647 0.11 -0.7
697,751 - CCNA_00647 0.14 +0.5
697,792 - CCNA_00647 0.19 -1.3
697,794 + CCNA_00647 0.19 +0.4
697,802 - CCNA_00647 0.20 +2.9
697,857 + CCNA_00647 0.27 -1.0
697,906 + CCNA_00647 0.34 -1.4
697,914 - CCNA_00647 0.35 +0.4
697,925 - CCNA_00647 0.36 -1.0
697,957 + CCNA_00647 0.40 -1.8
697,957 + CCNA_00647 0.40 +1.9
697,957 + CCNA_00647 0.40 +0.9
698,004 + CCNA_00647 0.46 +0.3
698,004 + CCNA_00647 0.46 +0.0
698,004 + CCNA_00647 0.46 -1.2
698,069 + CCNA_00647 0.54 +0.1
698,077 - CCNA_00647 0.55 -1.6
698,077 - CCNA_00647 0.55 +0.3
698,111 - CCNA_00647 0.60 -1.3
698,155 + CCNA_00647 0.65 +0.1
698,163 - CCNA_00647 0.66 -0.6
698,168 - CCNA_00647 0.67 -1.3
698,168 - CCNA_00647 0.67 -1.6
698,172 + CCNA_00647 0.67 -0.5
698,173 + CCNA_00647 0.68 +1.2
698,173 + CCNA_00647 0.68 +0.5
698,173 + CCNA_00647 0.68 -1.1
698,183 + CCNA_00647 0.69 -0.7
698,186 - CCNA_00647 0.69 -0.7
698,186 - CCNA_00647 0.69 -2.9
698,191 - CCNA_00647 0.70 -0.9
698,191 - CCNA_00647 0.70 +0.5
698,193 + CCNA_00647 0.70 -0.2
698,218 + CCNA_00647 0.73 +0.7
698,226 - CCNA_00647 0.74 -1.5
698,280 + CCNA_00647 0.81 -0.3
698,299 + CCNA_00647 0.84 -0.7
698,300 + CCNA_00647 0.84 -0.2
698,305 - CCNA_00647 0.84 -0.5
698,311 + CCNA_00647 0.85 -2.9
698,319 - CCNA_00647 0.86 -1.3
698,319 - CCNA_00647 0.86 -0.9
698,362 + -1.4
698,362 + +0.1
698,374 + +0.1
698,380 - +0.3
698,565 + CCNA_00648 0.18 +0.0
698,565 + CCNA_00648 0.18 -1.6
698,565 + CCNA_00648 0.18 -2.0
698,565 + CCNA_00648 0.18 -2.6
698,566 + CCNA_00648 0.19 -1.7
698,573 - CCNA_00648 0.20 +0.0

Or see this region's nucleotide sequence