Experiment: PYE with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00382 and CCNA_00383 are separated by 138 nucleotides CCNA_00383 and CCNA_00384 are separated by 86 nucleotides
CCNA_00382: CCNA_00382 - adenine-specific methyltransferase ccrM, at 398,637 to 399,713
_00382
CCNA_00383: CCNA_00383 - ribonuclease HII, at 399,852 to 400,487
_00383
CCNA_00384: CCNA_00384 - glucan endo-1,3-beta-glucosidase, at 400,574 to 401,479
_00384
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 399.835 kb on - strand at 399.850 kb on + strand at 399.858 kb on - strand at 399.865 kb on - strand at 399.865 kb on - strand at 399.868 kb on + strand at 399.919 kb on + strand, within CCNA_00383 at 399.958 kb on + strand, within CCNA_00383 at 399.966 kb on - strand, within CCNA_00383 at 399.966 kb on - strand, within CCNA_00383 at 400.006 kb on + strand, within CCNA_00383 at 400.013 kb on - strand, within CCNA_00383 at 400.035 kb on - strand, within CCNA_00383 at 400.048 kb on + strand, within CCNA_00383 at 400.048 kb on + strand, within CCNA_00383 at 400.067 kb on - strand, within CCNA_00383 at 400.067 kb on - strand, within CCNA_00383 at 400.096 kb on + strand, within CCNA_00383 at 400.104 kb on - strand, within CCNA_00383 at 400.117 kb on + strand, within CCNA_00383 at 400.125 kb on - strand, within CCNA_00383 at 400.125 kb on - strand, within CCNA_00383 at 400.127 kb on + strand, within CCNA_00383 at 400.135 kb on - strand, within CCNA_00383 at 400.135 kb on - strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.179 kb on + strand, within CCNA_00383 at 400.187 kb on - strand, within CCNA_00383 at 400.187 kb on - strand, within CCNA_00383 at 400.189 kb on - strand, within CCNA_00383 at 400.202 kb on - strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.222 kb on + strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.230 kb on - strand, within CCNA_00383 at 400.249 kb on - strand, within CCNA_00383 at 400.254 kb on - strand, within CCNA_00383 at 400.259 kb on - strand, within CCNA_00383 at 400.259 kb on - strand, within CCNA_00383 at 400.259 kb on - strand, within CCNA_00383 at 400.259 kb on - strand, within CCNA_00383 at 400.282 kb on + strand, within CCNA_00383 at 400.282 kb on + strand, within CCNA_00383 at 400.282 kb on + strand, within CCNA_00383 at 400.290 kb on - strand, within CCNA_00383 at 400.290 kb on - strand, within CCNA_00383 at 400.296 kb on + strand, within CCNA_00383 at 400.296 kb on + strand, within CCNA_00383 at 400.296 kb on + strand, within CCNA_00383 at 400.311 kb on + strand, within CCNA_00383 at 400.311 kb on + strand, within CCNA_00383 at 400.313 kb on - strand, within CCNA_00383 at 400.336 kb on - strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.338 kb on + strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.346 kb on - strand, within CCNA_00383 at 400.384 kb on + strand, within CCNA_00383 at 400.389 kb on + strand, within CCNA_00383 at 400.428 kb on + strand at 400.429 kb on - strand at 400.442 kb on - strand at 400.443 kb on - strand at 400.455 kb on - strand at 400.455 kb on - strand at 400.457 kb on + strand at 400.457 kb on + strand at 400.465 kb on - strand at 400.503 kb on - strand at 400.503 kb on - strand at 400.508 kb on - strand at 400.510 kb on + strand at 400.524 kb on + strand at 400.524 kb on + strand at 400.567 kb on - strand at 400.576 kb on + strand at 400.584 kb on - strand at 400.594 kb on - strand at 400.608 kb on + strand at 400.639 kb on - strand at 400.642 kb on + strand at 400.657 kb on + strand at 400.657 kb on + strand at 400.665 kb on - strand, within CCNA_00384 at 400.665 kb on - strand, within CCNA_00384 at 400.671 kb on + strand, within CCNA_00384 at 400.680 kb on - strand, within CCNA_00384 at 400.683 kb on - strand, within CCNA_00384 at 400.690 kb on + strand, within CCNA_00384 at 400.747 kb on + strand, within CCNA_00384 at 400.758 kb on - strand, within CCNA_00384 at 400.766 kb on + strand, within CCNA_00384 at 400.766 kb on + strand, within CCNA_00384 at 400.774 kb on - strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.781 kb on + strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.789 kb on - strand, within CCNA_00384 at 400.798 kb on + strand, within CCNA_00384 at 400.834 kb on + strand, within CCNA_00384 at 400.848 kb on - strand, within CCNA_00384 at 400.864 kb on + strand, within CCNA_00384 at 400.888 kb on + strand, within CCNA_00384 at 400.904 kb on - strand, within CCNA_00384 at 400.934 kb on + strand, within CCNA_00384 at 400.942 kb on - strand, within CCNA_00384 at 400.992 kb on + strand, within CCNA_00384 at 401.007 kb on - strand, within CCNA_00384 at 401.019 kb on + strand, within CCNA_00384 at 401.025 kb on + strand, within CCNA_00384 at 401.066 kb on - strand, within CCNA_00384 at 401.105 kb on + strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.113 kb on - strand, within CCNA_00384 at 401.119 kb on + strand, within CCNA_00384 at 401.167 kb on + strand, within CCNA_00384 at 401.175 kb on - strand, within CCNA_00384 at 401.196 kb on + strand at 401.230 kb on - strand, within CCNA_00384 at 401.327 kb on - strand, within CCNA_00384 at 401.443 kb on - strand at 401.445 kb on + strand at 401.445 kb on - strand at 401.452 kb on + strand at 401.453 kb on - strand at 401.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 5 vol% remove 399,835 - +0.9 399,850 + +0.3 399,858 - +1.3 399,865 - -1.2 399,865 - -0.9 399,868 + -1.8 399,919 + CCNA_00383 0.11 +0.1 399,958 + CCNA_00383 0.17 -2.0 399,966 - CCNA_00383 0.18 -0.9 399,966 - CCNA_00383 0.18 +0.2 400,006 + CCNA_00383 0.24 -1.2 400,013 - CCNA_00383 0.25 -1.5 400,035 - CCNA_00383 0.29 +1.0 400,048 + CCNA_00383 0.31 -1.6 400,048 + CCNA_00383 0.31 +1.0 400,067 - CCNA_00383 0.34 +1.0 400,067 - CCNA_00383 0.34 -0.9 400,096 + CCNA_00383 0.38 -0.9 400,104 - CCNA_00383 0.40 -0.0 400,117 + CCNA_00383 0.42 -1.6 400,125 - CCNA_00383 0.43 +0.3 400,125 - CCNA_00383 0.43 +0.4 400,127 + CCNA_00383 0.43 -0.3 400,135 - CCNA_00383 0.44 -0.2 400,135 - CCNA_00383 0.44 -0.2 400,179 + CCNA_00383 0.51 +1.2 400,179 + CCNA_00383 0.51 -1.5 400,187 - CCNA_00383 0.53 -0.7 400,187 - CCNA_00383 0.53 +0.5 400,189 - CCNA_00383 0.53 +1.2 400,202 - CCNA_00383 0.55 +0.6 400,222 + CCNA_00383 0.58 +1.8 400,222 + CCNA_00383 0.58 -0.6 400,222 + CCNA_00383 0.58 +0.4 400,230 - CCNA_00383 0.59 +0.4 400,230 - CCNA_00383 0.59 +0.3 400,230 - CCNA_00383 0.59 +0.7 400,230 - CCNA_00383 0.59 -1.1 400,230 - CCNA_00383 0.59 +0.6 400,249 - CCNA_00383 0.62 +1.0 400,254 - CCNA_00383 0.63 +0.5 400,259 - CCNA_00383 0.64 +0.9 400,259 - CCNA_00383 0.64 +0.7 400,259 - CCNA_00383 0.64 +0.7 400,259 - CCNA_00383 0.64 +1.0 400,282 + CCNA_00383 0.68 +0.2 400,282 + CCNA_00383 0.68 -0.6 400,282 + CCNA_00383 0.68 -0.2 400,290 - CCNA_00383 0.69 +0.5 400,290 - CCNA_00383 0.69 +0.6 400,296 + CCNA_00383 0.70 -0.3 400,296 + CCNA_00383 0.70 -0.3 400,296 + CCNA_00383 0.70 -1.2 400,311 + CCNA_00383 0.72 +2.2 400,311 + CCNA_00383 0.72 +0.3 400,313 - CCNA_00383 0.72 +0.9 400,336 - CCNA_00383 0.76 +0.8 400,338 + CCNA_00383 0.76 -0.2 400,338 + CCNA_00383 0.76 -1.1 400,338 + CCNA_00383 0.76 -0.8 400,338 + CCNA_00383 0.76 -1.4 400,338 + CCNA_00383 0.76 -1.4 400,346 - CCNA_00383 0.78 +1.4 400,346 - CCNA_00383 0.78 +0.3 400,346 - CCNA_00383 0.78 +0.0 400,384 + CCNA_00383 0.84 -0.9 400,389 + CCNA_00383 0.84 -2.3 400,428 + -1.9 400,429 - -0.7 400,442 - +0.9 400,443 - +0.0 400,455 - -0.2 400,455 - -0.2 400,457 + -1.7 400,457 + -1.3 400,465 - +0.4 400,503 - +0.4 400,503 - +0.5 400,508 - -1.0 400,510 + -1.8 400,524 + -1.9 400,524 + +0.0 400,567 - -0.3 400,576 + -0.6 400,584 - -0.7 400,594 - +0.0 400,608 + -1.5 400,639 - +0.7 400,642 + -1.9 400,657 + -0.9 400,657 + -1.1 400,665 - CCNA_00384 0.10 -1.3 400,665 - CCNA_00384 0.10 +0.0 400,671 + CCNA_00384 0.11 -1.2 400,680 - CCNA_00384 0.12 +1.2 400,683 - CCNA_00384 0.12 -0.6 400,690 + CCNA_00384 0.13 -0.5 400,747 + CCNA_00384 0.19 -0.9 400,758 - CCNA_00384 0.20 +1.7 400,766 + CCNA_00384 0.21 +0.2 400,766 + CCNA_00384 0.21 +0.6 400,774 - CCNA_00384 0.22 +0.7 400,781 + CCNA_00384 0.23 -0.9 400,781 + CCNA_00384 0.23 -1.2 400,789 - CCNA_00384 0.24 +0.9 400,789 - CCNA_00384 0.24 +1.0 400,789 - CCNA_00384 0.24 +0.9 400,789 - CCNA_00384 0.24 +0.1 400,789 - CCNA_00384 0.24 +0.8 400,789 - CCNA_00384 0.24 -0.1 400,789 - CCNA_00384 0.24 +1.0 400,798 + CCNA_00384 0.25 -0.8 400,834 + CCNA_00384 0.29 -2.2 400,848 - CCNA_00384 0.30 -2.0 400,864 + CCNA_00384 0.32 +0.4 400,888 + CCNA_00384 0.35 +0.5 400,904 - CCNA_00384 0.36 -0.3 400,934 + CCNA_00384 0.40 -2.6 400,942 - CCNA_00384 0.41 -2.1 400,992 + CCNA_00384 0.46 -0.5 401,007 - CCNA_00384 0.48 +2.0 401,019 + CCNA_00384 0.49 -0.2 401,025 + CCNA_00384 0.50 -0.2 401,066 - CCNA_00384 0.54 -1.6 401,105 + CCNA_00384 0.59 -1.1 401,113 - CCNA_00384 0.59 +1.0 401,113 - CCNA_00384 0.59 -0.2 401,119 + CCNA_00384 0.60 -1.8 401,167 + CCNA_00384 0.65 -0.5 401,175 - CCNA_00384 0.66 +1.0 401,196 + +4.0 401,230 - CCNA_00384 0.72 -1.2 401,327 - CCNA_00384 0.83 -0.3 401,443 - -1.0 401,445 + +1.4 401,445 - -1.9 401,452 + -0.3 401,453 - -0.9 401,453 - -0.9
Or see this region's nucleotide sequence