Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34050

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS34040 and BPHYT_RS34045 are separated by 10 nucleotidesBPHYT_RS34045 and BPHYT_RS34050 are separated by 3 nucleotidesBPHYT_RS34050 and BPHYT_RS34055 overlap by 4 nucleotidesBPHYT_RS34055 and BPHYT_RS34060 overlap by 4 nucleotides BPHYT_RS34040: BPHYT_RS34040 - hypothetical protein, at 3,236,902 to 3,238,806 _RS34040 BPHYT_RS34045: BPHYT_RS34045 - secretion system protein F, at 3,238,817 to 3,239,665 _RS34045 BPHYT_RS34050: BPHYT_RS34050 - secretion system protein F, at 3,239,669 to 3,240,550 _RS34050 BPHYT_RS34055: BPHYT_RS34055 - hypothetical protein, at 3,240,547 to 3,240,897 _RS34055 BPHYT_RS34060: BPHYT_RS34060 - pilus biosynthesis protein TadE, at 3,240,894 to 3,241,730 _RS34060 Position (kb) 3239 3240 3241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3238.728 kb on + strandat 3238.728 kb on + strandat 3238.729 kb on - strandat 3238.742 kb on - strandat 3239.912 kb on - strand, within BPHYT_RS34050at 3240.056 kb on + strand, within BPHYT_RS34050at 3240.125 kb on + strand, within BPHYT_RS34050at 3240.126 kb on - strand, within BPHYT_RS34050at 3240.305 kb on - strand, within BPHYT_RS34050at 3240.566 kb on - strandat 3241.444 kb on - strand, within BPHYT_RS34060at 3241.485 kb on + strand, within BPHYT_RS34060at 3241.485 kb on + strand, within BPHYT_RS34060

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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3,238,728 + +3.0
3,238,728 + -0.9
3,238,729 - -0.1
3,238,742 - -0.3
3,239,912 - BPHYT_RS34050 0.28 -4.2
3,240,056 + BPHYT_RS34050 0.44 -0.6
3,240,125 + BPHYT_RS34050 0.52 -1.0
3,240,126 - BPHYT_RS34050 0.52 +0.9
3,240,305 - BPHYT_RS34050 0.72 -4.7
3,240,566 - +1.9
3,241,444 - BPHYT_RS34060 0.66 +0.1
3,241,485 + BPHYT_RS34060 0.71 +1.4
3,241,485 + BPHYT_RS34060 0.71 -0.1

Or see this region's nucleotide sequence