Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33710

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33705 and BPHYT_RS33710 are separated by 56 nucleotides BPHYT_RS33705: BPHYT_RS33705 - oxidoreductase, at 3,144,440 to 3,145,234 _RS33705 BPHYT_RS33710: BPHYT_RS33710 - porin, at 3,145,291 to 3,146,328 _RS33710 Position (kb) 3145 3146 3147Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3144.697 kb on - strand, within BPHYT_RS33705at 3144.764 kb on + strand, within BPHYT_RS33705at 3144.793 kb on - strand, within BPHYT_RS33705at 3144.889 kb on + strand, within BPHYT_RS33705at 3144.899 kb on + strand, within BPHYT_RS33705at 3145.232 kb on + strandat 3145.346 kb on + strandat 3146.372 kb on - strandat 3146.782 kb on + strandat 3147.142 kb on - strandat 3147.260 kb on - strandat 3147.260 kb on - strandat 3147.262 kb on + strandat 3147.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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3,144,697 - BPHYT_RS33705 0.32 -0.5
3,144,764 + BPHYT_RS33705 0.41 -1.2
3,144,793 - BPHYT_RS33705 0.44 -0.6
3,144,889 + BPHYT_RS33705 0.56 -0.3
3,144,899 + BPHYT_RS33705 0.58 -0.3
3,145,232 + -2.4
3,145,346 + +2.1
3,146,372 - -0.3
3,146,782 + -0.5
3,147,142 - -1.7
3,147,260 - +2.9
3,147,260 - -1.4
3,147,262 + -0.7
3,147,262 + -0.1

Or see this region's nucleotide sequence