Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32830

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32825 and BPHYT_RS32830 are separated by 271 nucleotidesBPHYT_RS32830 and BPHYT_RS32835 are separated by 33 nucleotides BPHYT_RS32825: BPHYT_RS32825 - Xylose isomerase (EC 5.3.1.5) (from data), at 2,945,138 to 2,946,460 _RS32825 BPHYT_RS32830: BPHYT_RS32830 - AraC family transcriptional regulator, at 2,946,732 to 2,947,949 _RS32830 BPHYT_RS32835: BPHYT_RS32835 - aldose 1-epimerase, at 2,947,983 to 2,949,068 _RS32835 Position (kb) 2946 2947 2948Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2945.910 kb on + strand, within BPHYT_RS32825at 2945.911 kb on - strand, within BPHYT_RS32825at 2945.911 kb on - strand, within BPHYT_RS32825at 2945.911 kb on - strand, within BPHYT_RS32825at 2946.314 kb on - strand, within BPHYT_RS32825at 2946.832 kb on - strandat 2947.037 kb on - strand, within BPHYT_RS32830at 2947.620 kb on + strand, within BPHYT_RS32830at 2947.654 kb on - strand, within BPHYT_RS32830at 2948.426 kb on + strand, within BPHYT_RS32835

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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2,945,910 + BPHYT_RS32825 0.58 +0.1
2,945,911 - BPHYT_RS32825 0.58 +0.9
2,945,911 - BPHYT_RS32825 0.58 -0.0
2,945,911 - BPHYT_RS32825 0.58 -0.7
2,946,314 - BPHYT_RS32825 0.89 -2.5
2,946,832 - -1.0
2,947,037 - BPHYT_RS32830 0.25 +1.4
2,947,620 + BPHYT_RS32830 0.73 +0.0
2,947,654 - BPHYT_RS32830 0.76 +1.7
2,948,426 + BPHYT_RS32835 0.41 +3.8

Or see this region's nucleotide sequence